Works matching DE "RIBOSWITCHES"

Results: 227

Ancient, giant riboswitches at atomic resolution.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 12, p. 1208, doi. 10.1038/nsmb.2453

By:

Breaker, Ronald R

Publication type:

Article

Structural insights into ligand binding and gene expression control by an adenosylcobalamin riboswitch.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 11, p. 1182, doi. 10.1038/nsmb.2405

By:

Peselis, Alla;
Serganov, Alexander

Publication type:

Article

The export factor Yra1 modulates mRNA 3? end processing.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 10, p. 1164, doi. 10.1038/nsmb.2126

By:

Johnson, Sara A;
Kim, Hyunmin;
Erickson, Benjamin;
Bentley, David L

Publication type:

Article

The glmS riboswitch integrates signals from activating and inhibitory metabolites in vivo.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 3, p. 359, doi. 10.1038/nsmb.1989

By:

Watson, Peter Y.;
Fedor, Martha J.

Publication type:

Article

Carba‐Sugar Analogs of Glucosamine‐6‐Phosphate: New Activators for the glmS Riboswitch.

Published in:

Chemistry - A European Journal, 2023, v. 29, n. 3, p. 1, doi. 10.1002/chem.202202378

By:

Stängle, David;
Silkenath, Bjarne;
Gehle, Paul;
Esser, Anna;
Mayer, Günter;
Wittmann, Valentin

Publication type:

Article

Riboswitch Mechanisms: New Tricks for an Old Dog.

Published in:

Biochemistry (00062979), 2021, v. 86, n. 8, p. 962, doi. 10.1134/S0006297921080071

By:

Ariza-Mateos, Ascensión;
Nuthanakanti, Ashok;
Serganov, Alexander

Publication type:

Article

Evaluation of inducible promoter–riboswitch constructs for heterologous protein expression in the cyanobacterial species Anabaena sp. PCC 7120.

Published in:

Synthetic Biology (23977000), 2021, v. 6, n. 1, p. 1, doi. 10.1093/synbio/ysab019

By:

Svoboda, Jessee;
Cisneros, Brenda;
Philmus, Benjamin

Publication type:

Article

Riboswitch identification using Ligase-Assisted Selection for the Enrichment of Responsive Ribozymes (LigASERR).

Published in:

Synthetic Biology (23977000), 2019, v. 4, n. 1, p. N.PAG, doi. 10.1093/synbio/ysz019

By:

Haines, Matthew C;
Storch, Marko;
Oyarzún, Diego A;
Stan, Guy-Bart;
Baldwin, Geoff S

Publication type:

Article

Expanding the toolbox of synthetic riboswitches with guanine-dependent aptazymes.

Published in:

Synthetic Biology (23977000), 2019, v. 4, n. 1, p. N.PAG, doi. 10.1093/synbio/ysy022

By:

Stifel, Julia;
Spöring, Maike;
Hartig, Jörg Steffen

Publication type:

Article

Nuclear accessibility of β-actin mRNA is measured by 3D single-molecule real-time tracking.

Published in:

Journal of Cell Biology, 2015, v. 209, n. 4, p. 609, doi. 10.1083/jcb.201411032

By:

Smith, Carlas S.;
Preibisch, Stephan;
Joseph, Aviva;
Abrahamsson, Sara;
Rieger, Bernd;
Myers, Eugene;
Singer, Robert H.;
Grunwald, David

Publication type:

Article

Targeting FMN, TPP, SAM-I, and glmS Riboswitches with Chimeric Antisense Oligonucleotides for Completely Rational Antibacterial Drug Development.

Published in:

Antibiotics (2079-6382), 2023, v. 12, n. 11, p. 1607, doi. 10.3390/antibiotics12111607

By:

Pavlova, Nikolet;
Traykovska, Martina;
Penchovsky, Robert

Publication type:

Article

A Riboswitch-Driven Era of New Antibacterials.

Published in:

Antibiotics (2079-6382), 2022, v. 11, n. 9, p. 1243, doi. 10.3390/antibiotics11091243

By:

Giarimoglou, Nikoleta;
Kouvela, Adamantia;
Maniatis, Alexandros;
Papakyriakou, Athanasios;
Zhang, Jinwei;
Stamatopoulou, Vassiliki;
Stathopoulos, Constantinos

Publication type:

Article

Bioinformatics and Genomic Analyses of the Suitability of Eight Riboswitches for Antibacterial Drug Targets.

Published in:

Antibiotics (2079-6382), 2022, v. 11, n. 9, p. 1177, doi. 10.3390/antibiotics11091177

By:

Pavlova, Nikolet;
Penchovsky, Robert

Publication type:

Article

Riboswitches as Drug Targets for Antibiotics.

Published in:

Antibiotics (2079-6382), 2021, v. 10, n. 1, p. 45, doi. 10.3390/antibiotics10010045

By:

Panchal, Vipul;
Brenk, Ruth

Publication type:

Article

versatile strategy for convenient circular bivalent functional nucleic acids construction.

Published in:

National Science Review, 2023, v. 10, n. 2, p. 1, doi. 10.1093/nsr/nwac107

By:

Zhang, Xiao-Jing;
Zhao, Zhuo;
Wang, Xia;
Su, Min-Hui;
Ai, Lili;
Li, Yingying;
Yuan, Quan;
Wang, Xue-Qiang;
Tan, Weihong

Publication type:

Article

Real-Time Assessment of Intracellular Metabolites in Single Cells through RNA-Based Sensors.

Published in:

Biomolecules (2218-273X), 2023, v. 13, n. 5, p. 765, doi. 10.3390/biom13050765

By:

Ortega, Alvaro Darío

Publication type:

Article

Automated design of protein-binding riboswitches for sensing human biomarkers in a cell-free expression system.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38098-0

By:

Vezeau, Grace E.;
Gadila, Lipika R.;
Salis, Howard M.

Publication type:

Article

Observation of structural switch in nascent SAM-VI riboswitch during transcription at single-nucleotide and single-molecule resolution.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38042-2

By:

Xue, Yanyan;
Li, Jun;
Chen, Dian;
Zhao, Xizhu;
Hong, Liang;
Liu, Yu

Publication type:

Article

Possible involvement of three-stemmed pseudoknots in regulating translational initiation in human mRNAs.

Published in:

PLoS ONE, 2024, v. 19, n. 7, p. 1, doi. 10.1371/journal.pone.0307541

By:

Huang, Xiaolan;
Du, Zhihua

Publication type:

Article

Linker-Mediated Inactivation of the SAM-II Domain in the Tandem SAM-II/SAM-V Riboswitch.

Published in:

International Journal of Molecular Sciences, 2024, v. 25, n. 20, p. 11288, doi. 10.3390/ijms252011288

By:

Feng, Shanshan;
Xiao, Wenwen;
Yu, Yingying;
Liu, Guangfeng;
Zhang, Yunlong;
Chen, Ting;
Lu, Changrui

Publication type:

Article

Riboswitch Mechanisms for Regulation of P1 Helix Stability.

Published in:

International Journal of Molecular Sciences, 2024, v. 25, n. 19, p. 10682, doi. 10.3390/ijms251910682

By:

Stagno, Jason R.;
Wang, Yun-Xing

Publication type:

Article

Opportunities for Riboswitch Inhibition by Targeting Co-Transcriptional RNA Folding Events.

Published in:

International Journal of Molecular Sciences, 2024, v. 25, n. 19, p. 10495, doi. 10.3390/ijms251910495

By:

Stephen, Christine;
Palmer, Danea;
Mishanina, Tatiana V.

Publication type:

Article

Bacterial 2′-Deoxyguanosine Riboswitch Classes as Potential Targets for Antibiotics: A Structure and Dynamics Study.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 4, p. 1925, doi. 10.3390/ijms23041925

By:

Antunes, Deborah;
Santos, Lucianna H. S.;
Caffarena, Ernesto Raul;
Guimarães, Ana Carolina Ramos

Publication type:

Article

Developments of Riboswitches and Toehold Switches for Molecular Detection—Biosensing and Molecular Diagnostics.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 9, p. 3192, doi. 10.3390/ijms21093192

By:

Hoang Trung Chau, Tin;
Hoang Anh Mai, Dung;
Ngoc Pham, Diep;
Thi Quynh Le, Hoa;
Yeol Lee, Eun

Publication type:

Article

Tissue Expression Difference between mRNAs and lncRNAs.

Published in:

International Journal of Molecular Sciences, 2018, v. 19, n. 11, p. 3416, doi. 10.3390/ijms19113416

By:

Chen, Lei;
Zhang, Yu-Hang;
Pan, Xiaoyong;
Liu, Min;
Wang, Shaopeng;
Huang, Tao;
Cai, Yu-Dong

Publication type:

Article

Selection and Characterization of a DNA Aptamer Specifically Targeting Human HECT Ubiquitin Ligase WWP1.

Published in:

International Journal of Molecular Sciences, 2018, v. 19, n. 3, p. 763, doi. 10.3390/ijms19030763

By:

Tucker, Wesley O.;
Kinghorn, Andrew B.;
Fraser, Lewis A.;
Cheung, Yee-Wai;
Tanner, Julian A.

Publication type:

Article

Computational Methods for Modeling Aptamers and Designing Riboswitches.

Published in:

International Journal of Molecular Sciences, 2017, v. 18, n. 11, p. 2442, doi. 10.3390/ijms18112442

By:

Sha Gong;
Yanli Wang;
Zhen Wang;
Wenbing Zhang

Publication type:

Article

Interfacing medicinal chemistry with structural bioinformatics: implications for T box riboswitch RNA drug discovery.

Published in:

BMC Bioinformatics, 2012, v. 13, n. Suppl 2, p. 1, doi. 10.1186/1471-2105-13-S2-S5

By:

Jentzsch, Franziska;
Hines, Jennifer V.

Publication type:

Article

Riboswitch Detection Using Profile Hidden Markov Models.

Published in:: BMC Bioinformatics, 2009, v. 10, p. 325, doi. 10.1186/1471-2105-10-325
Publication type:: Article

Rich RNA Structure Landscapes Revealed by Mutate-and-Map Analysis.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004473

By:

Cordero, Pablo;
Das, Rhiju

Publication type:

Article

Evolutionary Evidence for Alternative Structure in RNA Sequence Co-variation.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003152

By:

Ritz, Justin;
Martin, Joshua S.;
Laederach, Alain

Publication type:

Article

The Impact of a Ligand Binding on Strand Migration in the SAM-I Riboswitch

Published in:

PLoS Computational Biology, 2013, v. 9, n. 5, p. 1, doi. 10.1371/journal.pcbi.1003069

By:

Huang, Wei;
Kim, Joohyun;
Jha, Shantenu;
Aboul-ela, Fareed

Publication type:

Article

Dynamic Energy Landscapes of Riboswitches Help Interpret Conformational Rearrangements and Function.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 2, p. 1, doi. 10.1371/journal.pcbi.1002368

By:

Quarta, Giulio;
Sin, Ken;
Schlick, Tamar

Publication type:

Article

Top-Beiträge aus unseren Schwesterzeitschriften: Angew. Chem. 30/2014.

Published in:: Angewandte Chemie, 2014, v. 126, n. 30, p. 7832, doi. 10.1002/ange.201483013
Publication type:: Article

Top-Beiträge aus unseren Schwesterzeitschriften: Angew. Chem. 28/2014.

Published in:: Angewandte Chemie, 2014, v. 126, n. 28, p. 7238, doi. 10.1002/ange.201482813
Publication type:: Article

A Synthetic Riboswitch that Operates using a Rationally Designed Ligand-RNA Pair.

Published in:

Angewandte Chemie, 2013, v. 125, n. 38, p. 10160, doi. 10.1002/ange.201303370

By:

Dohno, Chikara;
Kohyama, Izumi;
Kimura, Maki;
Hagihara, Masaki;
Nakatani, Kazuhiko

Publication type:

Article

Selective small-molecule inhibition of an RNA structural element.

Published in:

Nature, 2015, v. 526, n. 7575, p. 672, doi. 10.1038/nature15542

By:

Howe, John A.;
Wang, Hao;
Fischmann, Thierry O.;
Balibar, Carl J.;
Xiao, Li;
Galgoci, Andrew M.;
Malinverni, Juliana C.;
Mayhood, Todd;
Villafania, Artjohn;
Nahvi, Ali;
Murgolo, Nicholas;
Barbieri, Christopher M.;
Mann, Paul A.;
Carr, Donna;
Xia, Ellen;
Zuck, Paul;
Riley, Dan;
Painter, Ronald E.;
Walker, Scott S.;
Sherborne, Brad

Publication type:

Article

Bacillus subtilis ypaA gene regulation mechanism by FMN riboswitch.

Published in:

Russian Journal of Genetics, 2014, v. 50, n. 3, p. 319, doi. 10.1134/S1022795414030089

By:

Sklyarova, S.;
Mironov, A.

Publication type:

Article

Allosteric mechanism of the V. vulnificus adenine riboswitch resolved by four-dimensional chemical mapping.

Published in:

eLife, 2018, p. 1, doi. 10.7554/eLife.29602

By:

Tian, Siqi;
Kladwang, Wipapat;
Das, Rhiju

Publication type:

Article

Pausing guides RNA folding to populate transiently stable RNA structures for riboswitch-based transcription regulation.

Published in:

eLife, 2017, p. 1, doi. 10.7554/eLife.21297

By:

Steinert, Hannah;
Sochor, Florian;
Wacker, Anna;
Buck, Janina;
Helmling, Christina;
Hiller, Fabian;
Keyhani, Sara;
Noeske, Jonas;
Grimm, Steffen;
Rudolph, Martin M.;
Keller, Heiko;
Mooney, Rachel Anne;
Landick, Robert;
Suess, Beatrix;
Fürtig, Boris;
Wöhnert, Jens;
Schwalbe, Harald

Publication type:

Article

Rational design of aptazyme riboswitches for efficient control of gene expression in mammalian cells.

Published in:

eLife, 2016, p. 1, doi. 10.7554/eLife.18858

By:

Guocai Zhong;
Haimin Wang;
Bailey, Charles C.;
Guangping Gao;
Farzan, Michael

Publication type:

Article

The light side of the force.

Published in:

eLife, 2016, p. 1, doi. 10.7554/eLife.14274

By:

BASU, AAKASH;
TAEKJIP HA

Publication type:

Article

Observation of long-range tertiary interactions during ligand binding by the TPP riboswitch aptamer.

Published in:

eLife, 2015, p. 1, doi. 10.7554/eLife.12362

By:

Duesterberg, Van K.;
Fischer-Hwang, Irena T.;
Perez, Christian F.;
Hogan, Daniel W.;
Block, Steven M.

Publication type:

Article

Pseudomonas aeruginosa post‐translational responses to elevated c‐di‐GMP levels.

Published in:

Molecular Microbiology, 2022, v. 117, n. 5, p. 1213, doi. 10.1111/mmi.14902

By:

Bense, Sarina;
Witte, Julius;
Preuße, Matthias;
Koska, Michal;
Pezoldt, Lorena;
Dröge, Astrid;
Hartmann, Oliver;
Müsken, Mathias;
Schulze, Julia;
Fiebig, Timm;
Bähre, Heike;
Felgner, Sebastian;
Pich, Andreas;
Häussler, Susanne

Publication type:

Article

Riboswitch control of bacterial RNA stability.

Published in:

Molecular Microbiology, 2021, v. 116, n. 2, p. 361, doi. 10.1111/mmi.14723

By:

Richards, Jamie;
Belasco, Joel G.

Publication type:

Article

Widespread bacterial utilization of guanidine as nitrogen source.

Published in:

Molecular Microbiology, 2021, v. 116, n. 1, p. 200, doi. 10.1111/mmi.14702

By:

Sinn, Malte;
Hauth, Franziskus;
Lenkeit, Felina;
Weinberg, Zasha;
Hartig, Jörg S.

Publication type:

Article

Light-induced alteration of c-di-GMP level controls motility of Synechocystis sp. PCC 6803.

Published in:

Molecular Microbiology, 2012, v. 85, n. 2, p. 239, doi. 10.1111/j.1365-2958.2012.08106.x

By:

Savakis, Philipp;
De Causmaecker, Sven;
Angerer, Veronika;
Ruppert, Ulrike;
Anders, Katrin;
Essen, Lars-Oliver;
Wilde, Annegret

Publication type:

Article

ERCC1, RRM1 and BRCA1 mRNA expression levels and clinical outcome of advanced non-small cell lung cancer.

Published in:

2011

By:

Su, Chunxia;
Zhou, Songwen;
Zhang, Ling;
Ren, Shengxiang;
Xu, Jianfang;
Zhang, Jie;
Lv, Meijun;
Zhou, Caicun

Publication type:

journal article

A small RNA that cooperatively senses two stacked metabolites in one pocket for gene control.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-021-27790-8

By:

Schroeder, Griffin M.;
Cavender, Chapin E.;
Blau, Maya E.;
Jenkins, Jermaine L.;
Mathews, David H.;
Wedekind, Joseph E.

Publication type:

Article

Switching at the ribosome: riboswitches need rProteins as modulators to regulate translation.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25024-5

By:

de Jesus, Vanessa;
Qureshi, Nusrat S.;
Warhaut, Sven;
Bains, Jasleen K.;
Dietz, Marina S.;
Heilemann, Mike;
Schwalbe, Harald;
Fürtig, Boris

Publication type:

Article