Works matching DE "GENE regulatory networks"

Results: 5000

ANALYSIS OF ARCHAEAL DIVERSITY AND ITS INFLUENCING FACTORS IN THE SOIL OF NY-ÅLESUND MELTWATER AREAS IN ARCTIC NORWAY.

Published in:

Applied Ecology & Environmental Research, 2025, v. 23, n. 3, p. 4167, doi. 10.15666/aeer/2303_41674181

By:

XU, X.;
XING, L.;
QIN, Y.;
ZHANG, H.;
WANG, J.;
ZHANG, X.;
KONG, L.;
LI, X.;
WANG, N.

Publication type:

Article

Efficient expression of recombinant proteins in Bacillus subtilis using a rewired gene circuit of quorum sensing.

Published in:

Biotechnology Progress, 2025, v. 41, n. 3, p. 1, doi. 10.1002/btpr.70007

By:

Hao, Wenliang;
Yang, Shihao;
Sheng, Yuou;
Ye, Chengfeng;
Han, Laichuang;
Zhou, Zhemin;
Cui, Wenjing

Publication type:

Article

The PavMYB.C2-UFGT module contributes to fruit coloration via modulating anthocyanin biosynthesis in sweet cherry.

Published in:

PLoS Genetics, 2025, v. 21, n. 6, p. 1, doi. 10.1371/journal.pgen.1011761

By:

Pei, Yangang;
Tang, Wanjia;
Huang, Yidi;
Li, Hongfen;
Liu, Xiaowei;
Chen, Hongxu;
He, Runmei;
Niu, Wenyi;
Du, Quanyan;
Chu, Yizhe;
Deng, Heng;
Liu, Mingchun;
Gong, Ronggao

Publication type:

Article

A comprehensive bioinformatics analysis of fatty acid metabolism-associated genes in the diagnosis and prognosis of head and neck squamous cell carcinoma.

Published in:

Research in Pharmaceutical Sciences, 2025, v. 20, n. 3, p. 356, doi. 10.4103/RPS.RPS_209_23

By:

Fesharaki, Shirin Alsadat Hashemi;
Abari, Sara Kiani;
Yazdani, Behnaz;
Farajollahi, Hadi;
Kalashami, Fatemeh Padidari;
Zadsar, Anahita;
Sirous, Hajar

Publication type:

Article

Identification of Therapeutic Targets in Autism Spectrum Disorder through CHD8-Notch Pathway Interaction Analysis.

Published in:

PLoS ONE, 2025, v. 20, n. 6, p. 1, doi. 10.1371/journal.pone.0325893

By:

Zhang, Hewei;
Hua, Shenghao;
Jiao, Daiyan;
Chen, Dong;
Gu, Qin;
Bao, Chao

Publication type:

Article

Identification and validation of differentially expressed genes in intramuscular fat metabolism in Guizhou yellow chickens using RNA-Seq analysis.

Published in:

PLoS ONE, 2025, v. 20, n. 6, p. 1, doi. 10.1371/journal.pone.0326128

By:

Tian, Yingping;
Wang, Xiaoya;
Rao, Yongchao;
Zhou, Xiaohong;
Jiang, Yaozhou;
Liu, Qinsong;
Wu, Sheng;
Zhang, Fuping

Publication type:

Article

Passivity analysis of discrete-time genetic regulatory networks with reaction-diffusion coupling and delay-dependent stability criteria.

Published in:

Electronic Research Archive, 2025, v. 33, n. 5, p. 1, doi. 10.3934/era.2025136

By:

Yang, Yongwei;
Yu, Yang;
Xu, Chunyun;
Zou, Chengye

Publication type:

Article

Shared Genetic Characteristics of Coronary Artery Disease and Peripheral artery Disease: Insights From Integrated Bioinformatics Analysis of RNA-Sequencing Data.

Published in:

Bioinformatics & Biology Insights, 2025, p. 1, doi. 10.1177/11779322251344123

By:

Nawabi, Abdul Qadir;
Chen, Lijuan

Publication type:

Article

Prognostic analysis of bladder cancer with neddylation-related genes.

Published in:

Hereditas, 2025, v. 162, n. 1, p. 1, doi. 10.1186/s41065-025-00463-y

By:

Xiaolong, Huang;
Min, Deng;
Sizhou, Zhang;
Daorong, Hu;
Juncheng, Pan;
Yanjian, Wang;
Hong, Li Jie Gu;
Ji, Zheng;
Qingjian, Wu

Publication type:

Article

Genome-wide transcriptome analysis reveal the molecular mechanism for triggering the formation of purple leaves in rice mutants nip-lpl and nip-dpl.

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1584423

By:

Wang, Chengyu;
Zhao, Hongyu;
Zhou, Yujie;
Zhang, Haipeng;
Chen, Xinyu;
Liang, Weifang;
Zheng, Han;
Hou, Fan;
Zhang, Junjie;
Xie, Liujie;
Zhao, Mingwei;
Zheng, Bingsong;
Li, Jianzhong

Publication type:

Article

Translational studies on pancreatic cancer and gastric cancer: a methodology in PhD thesis.

Published in:

Frontiers in Pharmacology, 2025, p. 1, doi. 10.3389/fphar.2025.1604017

By:

Resell, Mathilde;
Qvigstad, Gunnar;
Wang, Timothy C.;
Quante, Anne S.;
González-Fernández, África;
Waldum, Helge;
Chen, Duan;
Zhao, Chun-Mei

Publication type:

Article

Transcriptional regulatory logic orchestrating lymphoid and myeloid cell fate decisions.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1544483

By:

Godini, Rasoul;
Yan, Jingjing;
Chopin, Michaël

Publication type:

Article

Integrative transcriptomics and single-cell transcriptomics analyses reveal potential biomarkers and mechanisms of action in papillary thyroid carcinoma.

Published in:

Frontiers in Genetics, 2025, p. 1, doi. 10.3389/fgene.2025.1536198

By:

Cao, Wanchen;
Gao, Kai;
Zhao, Yi

Publication type:

Article

基于微阵列数据的circRNA-miRNA-mRNA竞争性内源RNA网络构建及其与自身免疫性肝炎小鼠模型肝损伤的相关性分析

Published in:

Journal of Clinical Hepatology / Linchuang Gandanbing Zazhi, 2025, v. 41, n. 5, p. 878, doi. 10.12449/JCH250513

By:

郭, 地;
刘, 莹;
刘, 杨

Publication type:

Article

Epigenetic changes and serotype-specific responses of alveolar type II epithelial cells to Streptococcus pneumoniae in resolving influenza A virus infection.

Published in:

Cell Communication & Signaling, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12964-025-02284-y

By:

Boehme, Julia D;
Jeron, Andreas;
Schultz, Kristin;
Melcher, Lars;
Schott, Katharina;
Gelmez, Elif;
Kröger, Andrea;
Stegemann-Koniszewski, Sabine;
Bruder, Dunja

Publication type:

Article

Repurposing the memory-promoting meclofenoxate hydrochloride as a treatment for Parkinson's disease through integrative multi-omics analysis.

Published in:

NPJ Parkinson's Disease, 2025, v. 11, n. 1, p. 1, doi. 10.1038/s41531-025-01027-7

By:

Zhang, Huasong;
Fan, Cong;
Li, Ling;
Liu, Feiyi;
Li, Shaoying;
Ma, Linyun;
Yang, Yuanhao;
Cooper, David N.;
Yang, Yuedong;
Hu, Ronggui;
Zhao, Huiying

Publication type:

Article

MAFB: a key regulator of myeloid commitment involved in hematological diseases.

Published in:

Cell Death Discovery, 2025, v. 11, n. 1, p. 1, doi. 10.1038/s41420-025-02551-4

By:

Ventura, Antonio Benedetto;
Loconte, Tiziana;
Negri, Antonio;
Viggiano, Luigi;
Fiermonte, Giuseppe;
Ciavarella, Sabino;
Guarini, Attilio;
Volpe, Giacomo

Publication type:

Article

Genome mining based on transcriptional regulatory networks uncovers a novel locus involved in desferrioxamine biosynthesis.

Published in:

PLoS Biology, 2025, v. 23, n. 6, p. 1, doi. 10.1371/journal.pbio.3003183

By:

Augustijn, Hannah E.;
Reitz, Zachary L.;
Zhang, Le;
Boot, Jeanine A.;
Elsayed, Somayah S.;
Challis, Gregory L.;
Medema, Marnix H.;
van Wezel, Gilles P.

Publication type:

Article

Identification of mitophagy-related biomarkers in severe acute pancreatitis: integration of WGCNA, machine learning algorithms and scRNA-seq.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1594085

By:

Xie, Xiaozhou;
Wang, Zheng;
Zhang, Haoyu;
Lu, Jiongdi;
Cao, Feng;
Li, Fei

Publication type:

Article

Integrated Analysis of Differential Expression Profiles of miRNA and mRNA in Gonads of Scatophagus argus Provides New Insights into Sexually Biased Gene Expression.

Published in:

Animals (2076-2615), 2025, v. 15, n. 11, p. 1564, doi. 10.3390/ani15111564

By:

Lei, Yaling;
Jiao, Kaizhi;
Huang, Yuanqing;
Wu, Yuwei;
Shi, Gang;
Shi, Hongjuan;
Chen, Huapu;
Deng, Siping;
Li, Guangli;
Tao, Wenjing;
Jiang, Dongneng

Publication type:

Article

Construction of Coexpression Networks Affecting Litter Size in Goats Based on Transcriptome Analysis.

Published in:

Animals (2076-2615), 2025, v. 15, n. 11, p. 1505, doi. 10.3390/ani15111505

By:

Ren, Yifan;
He, Junmin;
Liu, Guifen;
Wei, Chen;
Li, Xue;
Mao, Jingyi;
Zhang, Guoping;
Zhang, Wenhao;
Long, Li;
Wang, Ming;
Tian, Kechuan;
Huang, Xixia

Publication type:

Article

GePIF4 Increases the Multi-Flower/Capsule-Bearing Traits and Gastrodin Biosynthesis in Gastrodia elata.

Published in:

Plants (2223-7747), 2025, v. 14, n. 11, p. 1684, doi. 10.3390/plants14111684

By:

Xu, Yue;
Wu, Zhiqing;
Gao, Yugang;
Zang, Pu;
Yang, Xinyu;
Zhao, Yan;
Liu, Qun

Publication type:

Article

Unraveling the Multilayered Regulatory Networks of miRNAs and PhasiRNAs in Ginkgo biloba.

Published in:

Plants (2223-7747), 2025, v. 14, n. 11, p. 1650, doi. 10.3390/plants14111650

By:

Wei, Qixuan;
Xu, Ang;
Zhao, Anqi;
Shi, Lisha;
Wang, Qi;
Yang, Xiaoming;
Ming, Meiling;
Xue, Liangjiao;
Cao, Fuliang;
Fu, Fangfang

Publication type:

Article

Elucidating the Molecular Mechanisms of Physiological Fruit Abscission in Actinidia arguta Through Comparative Transcriptomics and Transient Genetic Transformation.

Published in:

Plants (2223-7747), 2025, v. 14, n. 11, p. 1645, doi. 10.3390/plants14111645

By:

Yuan, Pengqiang;
Wang, Yanli;
Sun, Yining;
Liu, Guoliang;
Qin, Hongyan;
Fan, Shutian;
Yan, Yiping;
Sun, Bowei;
Lu, Wenpeng

Publication type:

Article

Synergistic Response Mechanisms in Rice Seedlings Exposed to Brown Planthopper Infestation and High-Temperature Stress.

Published in:

Plants (2223-7747), 2025, v. 14, n. 11, p. 1644, doi. 10.3390/plants14111644

By:

Cao, Danyun;
Ping, Yuchen;
Lin, Yiru;
Hu, Jinyan;
Wang, Zimeng;
Yuan, Wei;
Li, Tongtong;
Liu, Linxin;
Zhang, Bo;
Xiong, Shijiao;
Dang, Cong;
Xue, Dawei

Publication type:

Article

Transcriptome and Co-Expression Network Analyses of Resistant and Susceptible Rice Cultivars in Response to Meloidogyne graminicola.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 11, p. 5315, doi. 10.3390/ijms26115315

By:

Zhang, Shirui;
Xiao, Zitong;
Shen, Kexiang;
Lai, Wentao;
Du, Shunbiao;
Zhou, Linyan;
Chen, Jiansong

Publication type:

Article

The Light-Regulated SsMYB106 Transcription Factor Promotes Flavonoids in Spatholobus suberectus.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 11, p. 5292, doi. 10.3390/ijms26115292

By:

Qin, Shuangshuang;
Liang, Ying;
Wei, Fan;
Wei, Guili;
Lin, Quan;
Chen, Xiaoying

Publication type:

Article

Transcriptome Analysis Reveals Co-Expression Regulation of Sugar Transport and Signaling Networks in Initiating Stolon-to-Tuber Transition in Potato.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 11, p. 5278, doi. 10.3390/ijms26115278

By:

Hu, Jun;
Hu, Jinxue;
Duan, Shaoguang;
Xiang, Congchao;
Duan, Yanfeng;
Zhang, Shuqing;
Li, Guangcun

Publication type:

Article

Machine Learning-Based Analysis of Differentially Expressed Genes in the Muscle Transcriptome Between Beef Cattle and Dairy Cattle.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 11, p. 5046, doi. 10.3390/ijms26115046

By:

Li, Shuai;
Guo, Yaqiang;
Huo, Chenxi;
Zhu, Lin;
Shi, Caixia;
Na, Risu;
Gu, Mingjuan;
Zhang, Wenguang

Publication type:

Article

Identification and Analysis of Key miRNA for Sex Differentiation in Hermaphroditic Juglans mandshurica Maxim.

Published in:

Plant Molecular Biology Reporter, 2025, v. 43, n. 2, p. 777, doi. 10.1007/s11105-024-01510-0

By:

Li, Jingze;
Zhang, Mengmeng;
Wu, Jingwen;
Qin, Baiting;
Liu, ChunPing;
Zhang, Lijie

Publication type:

Article

Computational modeling and dynamical analysis for B. subtilis competence genic regulation circuit with multiple time delays and external noisy regulation.

Published in:

Journal of Bioinformatics & Computational Biology, 2025, v. 23, n. 2, p. 1, doi. 10.1142/S0219720025500052

By:

Zhao, Na;
Liu, Haihong;
Yan, Fang

Publication type:

Article

Watkins wheat landraces decode nitrogen-driven biomass trade-offs: GWAS exposes root-shoot dialectics and elite landraces for resilient agriculture.

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1603577

By:

Waheed, Abdul;
Iqbal, Muhammad Shahid;
Sarfraz, Zareen;
Hou, Junliang;
Wei, Yanping;
Song, Bo;
Cheng, Shifeng

Publication type:

Article

Comprehensive transcriptome analysis provides molecular insights into the heterosis-associated drought tolerance and reveals ZmbHLH137 that promotes drought tolerance in maize seedlings.

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1565650

By:

Cao, Liru;
Zhang, Dongling;
Fahim, Abbas Muhammad;
Liu, Huafeng;
Zhang, Zhe;
Hu, Desheng;
Ye, Feiyu;
Ma, Chenchen;
Abou-Elwaf, Salah Fatouh;
Aboud, Nora M. Al;
Song, Yinghui;
Guo, Shulei;
Zhang, Qianjin;
Zhang, Xin;
Lu, Xiaomin

Publication type:

Article

Subregion-based radiomics analysis for predicting the histological grade of clear cell renal cell carcinoma.

Published in:

Frontiers in Oncology, 2025, p. 1, doi. 10.3389/fonc.2025.1554830

By:

Lv, Xue;
Dai, Xiao-Mao;
Zhou, Dai-Quan;
Yu, Na;
Hong, Yu-Qin;
Liu, Qiao

Publication type:

Article

Malignant epithelial cell marker–driven risk signature enables precise stratification in esophageal cancer.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1610991

By:

Zhang, Hao;
Cheng, Shizhao;
Xu, Yijun

Publication type:

Article

Single‐cell transcriptional profiling reveals cellular senescence and inflammatory persistence as key features of type 1 diabetes partial remission.

Published in:

Diabetes, Obesity & Metabolism, 2025, v. 27, n. 7, p. 3653, doi. 10.1111/dom.16384

By:

Xie, Ruiqiang;
Li, Tianhao;
Gao, Hong;
Xie, Chunguang;
Yuan, Haipo;
Feng, Zhijun

Publication type:

Article

Modular and signal-responsive transcriptional regulation using CRISPRi-aided genetic switches in Escherichia coli.

Published in:

Journal of Biological Engineering, 2025, v. 19, n. 1, p. 1, doi. 10.1186/s13036-025-00526-8

By:

Kim, Seong Keun;
Woo, Seung-Gyun;
Park, Jun-Hong;
Lee, Seung-Goo;
Lee, Dae-Hee

Publication type:

Article

Identification and Functional Investigation of Hub Genes Associated with Follicular Lymphoma.

Published in:

Biochemical Genetics, 2025, v. 63, n. 3, p. 2470, doi. 10.1007/s10528-024-10831-4

By:

Zhu, Yidong;
Jin, Xiaoyi;
Liu, Jun;
Yang, Wenzhong

Publication type:

Article

Landscape control for cell fate transitions.

Published in:

Communications Physics, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42005-025-02160-8

By:

Lv, Jinchao;
Zhang, Song;
Zhou, Wenjia;
Li, Chunhe

Publication type:

Article

Distinct type I and II interferon responses direct cortical and medullary thymic epithelial cell development.

Published in:

Science Immunology, 2025, v. 10, n. 107, p. 1, doi. 10.1126/sciimmunol.ado4720

By:

Mohammed, Abdulvasey;
Wang, Wenqing;
Arreola, Martin;
Solomon, Benjamin D.;
Slepicka, Priscila F.;
Hubka, Kelsea M.;
Nguyen, Hanh Dan;
Zheng, Zihao;
Chavez, Michael G.;
Yeh, Christine Y.;
Kim, Doo Kyung;
Ma, Michael R.;
Martin, Elisabeth;
Li, Li;
Pasca, Anca M.;
Winn, Virginia D.;
Gifford, Casey A.;
Kedlian, Veronika R.;
Park, Jong-Eun;
Khatri, Purvesh

Publication type:

Article

The potential role of biomarkers CD28 and PF4 in the pathogenesis of idiopathic pulmonary fibrosis and their impact on the prognosis: an immune microenvironment analysis.

Published in:

Hereditas, 2025, v. 162, n. 1, p. 1, doi. 10.1186/s41065-025-00464-x

By:

Yan, Li;
Li, Jiang-Han;
Zhang, Ai-Li;
Li, He;
Pang, Bo;
Meng, De-Yang;
Fu, Qian;
Du, Li-Juan;
Su, Yan

Publication type:

Article

Identification and validation of prognostic genes associated with T-cell exhaustion and macrophage polarization in breast cancer.

Published in:

Frontiers in Endocrinology, 2025, p. 1, doi. 10.3389/fendo.2025.1556496

By:

Cui, Fengqiang;
Yan, Changjiao;
Wu, Jiang;
Yang, Yuqing;
Yang, Jixin;
Luo, Jialing;
Li, Nanlin

Publication type:

Article

Dynamical mechanisms of growth-feedback effects on adaptive gene circuits.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.89170

By:

Ling-Wei Kong;
Wenjia Shi;
Xiao-Jun Tian;
Ying-Cheng Lai

Publication type:

Article

Single-cell transcriptome sequencing reveals new epithelial-stromal associated mesenchymal-like subsets in recurrent gliomas.

Published in:

Acta Neuropathologica Communications, 2025, v. 13, n. 1, p. 1, doi. 10.1186/s40478-025-02036-6

By:

Li, Jinwei;
Long, Shengrong;
Zhang, Yang;
Yu, Shuangqi;
Xu, Hongyu;
Liang, Rui;
Liu, Quan;
Zhang, Jinnan;
Li, Xiang;
Fu, Yixin;
Xin, Tao;
Wang, Yinyan

Publication type:

Article

Using Fisher's Method to Identify Enriched Gene Sets.

Published in:

Statistics in Biopharmaceutical Research, 2014, v. 6, n. 2, p. 154, doi. 10.1080/19466315.2014.888013

By:

Tryputsen, Volha;
Cabrera, Javier;
De Bondt, An;
Amaratunga, Dhammika

Publication type:

Article

Bioinformatics‑Based Analysis Reveals Diagnostic Biomarkers and Immune Landscape in Atopic Dermatitis.

Published in:

Clinical, Cosmetic & Investigational Dermatology, 2025, v. 18, p. 1071, doi. 10.2147/CCID.S510044

By:

Yang, Mingmei;
Zhang, Xiaolei;
Zhou, Chao;
Du, Yuanyun;
Zhou, Mengyuan;
Zhang, Wenting

Publication type:

Article

Does Bilirubin Have a Causal Relationship With Vitiligo? A Mendelian Randomization Study and Bioinformatics Analysis.

Published in:

Clinical, Cosmetic & Investigational Dermatology, 2025, v. 18, p. 1107, doi. 10.2147/CCID.S522604

By:

Xu, Danfeng;
Yin, Yinmeng;
Teng, Yan;
Huang, Youming;
Yu, Yong;
Tao, Xiaohua;
Fan, Yibin;
Ding, Xiaoxia

Publication type:

Article

Optimal Network Pairwise Comparison.

Published in:

Journal of the American Statistical Association, 2025, v. 120, n. 550, p. 1048, doi. 10.1080/01621459.2024.2393471

By:

Jin, Jiashun;
Ke, Zheng Tracy;
Luo, Shengming;
Ma, Yucong

Publication type:

Article

Shared hub genes in membranous nephropathy and kidney renal clear cell carcinoma: investigating molecular overlap and tumor progression.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-02701-1

By:

Hui, Peng;
Shuwen, Zhang

Publication type:

Article

Investigation of high fecundity genes by nanopore sequencing in sheep (Ovis aries) pituitary.

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11732-5

By:

Xiao, Xue;
Ji, Zhibin;
Wang, Tong;
Zhu, Dejie;
Li, Zhonghui;
Xu, Xinming;
Li, Fen

Publication type:

Article