Works matching AU Ruriko, Yoshida

Results: 30

Counting Tables Using the Double-Saddlepoint Approximation.

Published in:

Journal of Computational & Graphical Statistics, 2009, v. 18, n. 4, p. 915, doi. 10.1198/jcgs.2009.07154

By:

Zipunnikov, Vadim;
Booth, James G.;
Yoshida, Ruriko

Publication type:

Article

A support vector machine based test for incongruence between sets of trees in tree space.

Published in:

BMC Bioinformatics, 2012, v. 13, n. 1, p. 210, doi. 10.1186/1471-2105-13-210

By:

Haws, David C.;
Huggins, Peter;
O'Neill, Eric M.;
Weisrock, David W.;
Yoshida, Ruriko

Publication type:

Article

Tropical principal component analysis on the space of phylogenetic trees.

Published in:

Bioinformatics, 2020, v. 36, n. 17, p. 4590, doi. 10.1093/bioinformatics/btaa564

By:

Page, Robert;
Yoshida, Ruriko;
Zhang, Leon

Publication type:

Article

kdetrees: non-parametric estimation of phylogenetic tree distributions.

Published in:

Bioinformatics, 2014, v. 30, n. 16, p. 2280, doi. 10.1093/bioinformatics/btu258

By:

Weyenberg, Grady;
Huggins, Peter M.;
Schardl, Christopher L.;
Howe, Daniel K.;
Yoshida, Ruriko

Publication type:

Article

"Old Wine in New Bottles," and Some More New Wine - Stephen Fienberg's Influence on Algebraic Statistics.

Published in:

Journal of Algebraic Statistics, 2019, v. 10, n. 1, p. i, doi. 10.18409/jas.v10i1.100

By:

Petrović, Sonja;
Slavkovic, Aleksandra;
Ruriko Yoshida

Publication type:

Article

Open Problems on Connectivity of Fibers with Positive Margins in Multi-dimensional Contingency Tables.

Published in:

Journal of Algebraic Statistics, 2010, v. 1, n. 1, p. 13, doi. 10.18409/jas.v1i1.5

By:

Yoshida, Ruriko

Publication type:

Article

Letter from the Editors.

Published in:

Journal of Algebraic Statistics, 2010, v. 1, n. 1, p. 1

By:

Tekir, Ünsal;
Çetin, Eyüp;
Ruriko Yoshida;
Petrovic, Sonja;
Howe, J. Andrew;
Kiremitci, Bariş

Publication type:

Article

Clustering Methods over the Tropical Projective Torus.

Published in:

Mathematics (2227-7390), 2023, v. 11, n. 15, p. 3433, doi. 10.3390/math11153433

By:

Barnhill, David;
Yoshida, Ruriko

Publication type:

Article

Imputing Phylogenetic Trees Using Tropical Polytopes over the Space of Phylogenetic Trees.

Published in:

Mathematics (2227-7390), 2023, v. 11, n. 15, p. 3419, doi. 10.3390/math11153419

By:

Yoshida, Ruriko

Publication type:

Article

Tropical Balls and Its Applications to K Nearest Neighbor over the Space of Phylogenetic Trees.

Published in:

Mathematics (2227-7390), 2021, v. 9, n. 7, p. 779, doi. 10.3390/math9070779

By:

Yoshida, Ruriko;
Kim, Junseok

Publication type:

Article

Stochastic Safety Radius on UPGMA.

Published in:

Algorithms, 2022, v. 15, n. 12, p. 483, doi. 10.3390/a15120483

By:

Yoshida, Ruriko;
Paul, Lillian;
Nesbitt, Peter

Publication type:

Article

Efficiencies of the NJp, Maximum Likelihood, and Bayesian Methods of Phylogenetic Construction for Compositional and Noncompositional Genes.

Published in:

Molecular Biology & Evolution, 2016, v. 33, n. 6, p. 1618, doi. 10.1093/molbev/msw042

By:

Ruriko Yoshida;
Masatoshi Nei

Publication type:

Article

Beyond Pairwise Distances: Neighbor-Joining with Phylogenetic Diversity Estimates.

Published in:

Molecular Biology & Evolution, 2006, v. 23, n. 3, p. 491, doi. 10.1093/molbev/msj059

By:

Levy, Dan;
Yoshida, Ruriko;
Pachter, Lior

Publication type:

Article

Tropical Geometric Variation of Tree Shapes.

Published in:

Discrete & Computational Geometry, 2022, v. 68, n. 3, p. 817, doi. 10.1007/s00454-022-00410-y

By:

Lin, Bo;
Monod, Anthea;
Yoshida, Ruriko

Publication type:

Article

On the optimality of the neighbor-joining algorithm.

Published in:

Algorithms for Molecular Biology, 2008, v. 3, p. 1, doi. 10.1186/1748-7188-3-5

By:

Eickmeyer, Kord;
Huggins, Peter;
Pachter, Lior;
Yoshida, Ruriko

Publication type:

Article

Late Removal of Titanium Hardware from the Elbow Is Problematic.

Published in:

2012

By:

Bachoura, Abdo;
Yoshida, Ruriko;
Lattermann, Christian;
Kamineni, Srinath

Publication type:

Journal Article

Late Removal of Titanium Hardware from the Elbow Is Problematic.

Published in:

ISRN Orthopedics, 2012, p. 1, doi. 10.5402/2012/256239

By:

Bachoura, Abdo;
Yoshida, Ruriko;
Lattermann, Christian;
Kamineni, Srinath

Publication type:

Article

Approximate Techniques in Solving Optimal Camera Placement Problems.

Published in:

International Journal of Distributed Sensor Networks, 2013, p. 1, doi. 10.1155/2013/241913

By:

Jian Zhao;
Yoshida, Ruriko;
Sen-ching Samson Cheung;
David Haws

Publication type:

Article

Hybrid schemes for exact conditional inference in discrete exponential families.

Published in:

Annals of the Institute of Statistical Mathematics, 2018, v. 70, n. 5, p. 983, doi. 10.1007/s10463-017-0615-z

By:

Kahle, David;
Yoshida, Ruriko;
Garcia-Puente, Luis

Publication type:

Article

Distributions of topological tree metrics between a species tree and a gene tree.

Published in:

Annals of the Institute of Statistical Mathematics, 2017, v. 69, n. 3, p. 647, doi. 10.1007/s10463-016-0557-x

By:

Xi, Jing;
Xie, Jin;
Yoshida, Ruriko

Publication type:

Article

Estimating the number of zero-one multi-way tables via sequential importance sampling.

Published in:

Annals of the Institute of Statistical Mathematics, 2013, v. 65, n. 4, p. 763, doi. 10.1007/s10463-012-0392-7

By:

Xi, Jing;
Yoshida, Ruriko;
Haws, David

Publication type:

Article

Markov bases and subbases for bounded contingency tables.

Published in:

Annals of the Institute of Statistical Mathematics, 2010, v. 62, n. 4, p. 785, doi. 10.1007/s10463-010-0289-2

By:

Rapallo, Fabio;
Yoshida, Ruriko

Publication type:

Article

Livestock Evacuation Planning for Natural and Man-made Emergencies.

Published in:

International Journal of Mass Emergencies & Disasters, 2013, v. 31, n. 1, p. 25, doi. 10.1177/028072701303100103

By:

Vogiatzis, Chrysafis;
Yoshida, Ruriko;
Aviles-Spadoni, Ines;
Imamoto, Shigeki;
Pardalos, Panos M.

Publication type:

Article

Principal component analysis and the locus of the Fréchet mean in the space of phylogenetic trees.

Published in:

Biometrika, 2017, v. 104, n. 4, p. 901, doi. 10.1093/biomet/asx047

By:

NYE, TOM M. W.;
XIAOXIAN TANG;
WEYENBERG, GRADY;
RURIKO YOSHIDA

Publication type:

Article

Multilocus phylogenetic analysis with gene tree clustering.

Published in:

Annals of Operations Research, 2019, v. 276, n. 1/2, p. 293, doi. 10.1007/s10479-017-2456-9

By:

Yoshida, Ruriko;
Fukumizu, Kenji;
Vogiatzis, Chrysafis

Publication type:

Article

Tropical Logistic Regression Model on Space of Phylogenetic Trees.

Published in:

Bulletin of Mathematical Biology, 2024, v. 86, n. 8, p. 1, doi. 10.1007/s11538-024-01327-8

By:

Aliatimis, Georgios;
Yoshida, Ruriko;
Boyacı, Burak;
Grant, James A.

Publication type:

Article

Tropical Principal Component Analysis and Its Application to Phylogenetics.

Published in:

Bulletin of Mathematical Biology, 2019, v. 81, n. 2, p. 568, doi. 10.1007/s11538-018-0493-4

By:

Yoshida, Ruriko;
Zhang, Leon;
Zhang, Xu

Publication type:

Article

Optimality of the Neighbor Joining Algorithm and Faces of the Balanced Minimum Evolution Polytope.

Published in:

Bulletin of Mathematical Biology, 2011, v. 73, n. 11, p. 2627, doi. 10.1007/s11538-011-9640-x

By:

Haws, David;
Hodge, Terrell;
Yoshida, Ruriko

Publication type:

Article

Experiments with the Site Frequency Spectrum.

Published in:

Bulletin of Mathematical Biology, 2011, v. 73, n. 4, p. 829, doi. 10.1007/s11538-010-9605-5

By:

Sainudiin, Raazesh;
Thornton, Kevin;
Harlow, Jennifer;
Booth, James;
Stillman, Michael;
Yoshida, Ruriko;
Griffiths, Robert;
McVean, Gil;
Donnelly, Peter

Publication type:

Article

CHONDROCYTE RESPONSE TO TENSILE AND COMPRESSIVE CYCLIC LOADING MODALITIES.

Published in:

Journal of Musculoskeletal Research, 2012, v. 15, n. 1, p. 1250006-1, doi. 10.1142/S0218957712500066

By:

Kamineni, Srinath;
Wani, Zubair;
Luo, Zong-Ping;
Ruriko, Yoshida;
An, Kai-Nan

Publication type:

Article