Works matching IS 26740702 AND DT 2023 AND VI 3

Results: 40

The development of an ingestible biosensor for the characterization of gut metabolites related to major depressive disorder: hypothesis and theory.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1274184

By:

Densil, Amanda;
George, Mya Elisabeth;
Mahdi, Hala;
Chami, Andrew;
Mark, Alyssa;
Luo, Chantal;
Yifan Wang;
Ali, Aribah;
Pengpeng Tang;
Yihui Dong, Audrey;
Sin Yu Pao;
Suri, Rubani Singh;
Valentini, Isabella;
Al-Arabi, Lila;
Fanxiao Liu;
Singh, Alesha;
Linda Wu;
Helen Peng;
Sudharshan, Anjana;
Naqvi, Zoha

Publication type:

Article

Fine tuning a logical model of cancer cells to predict drug synergies: combining manual curation and automated parameterization.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1252961

By:

Flobak, Åsmund;
Zobolas, John;
Vazquez, Miguel;
Steigedal, Tonje S.;
Thommesen, Liv;
Grislingås, Asle;
Niederdorfer, Barbara;
Folkesson, Evelina;
Kuiper, Martin

Publication type:

Article

Editorial: Systems biology, women in science 2021/22: translational systems biology and in silico trials.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1293298

By:

Leopold, Jane A.;
Ganapathiraju, Madhavi K.;
Yanamala, Naveena

Publication type:

Article

Editorial: Virtual patients and digital twins in the systems analysis of drug discovery and development.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1293076

By:

Chen Zhao;
Hua He;
Huilin Ma

Publication type:

Article

Editorial: Use of quantitative systems pharmacology pipelines to bridge in vitro and in vivo results in drug discovery.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1291610

By:

Reali, Federico;
Csikász-Nagy, Attila;
Selvaggio, Gianluca

Publication type:

Article

Multilayered safety framework for living diagnostics in the colon.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1240040

By:

Mecacci, Sonia;
Torregrosa-Barragán, Lucía;
Asin-Garcia, Enrique;
Smith, Robert W.

Publication type:

Article

What's next for computational systems biology?

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1250228

By:

Voit, Eberhard O.;
Shah, Ashti M.;
Olivença, Daniel;
Vodovotz, Yoram

Publication type:

Article

Alzheimer's disease protein relevance analysis using human and mouse model proteomics data.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1085577

By:

Shi, Cathy;
Gottschalk, W. Kirby;
Colton, Carol A.;
Mukherjee, Sayan;
Lutz, Michael W.

Publication type:

Article

In-silico modelling of the mitogen-activated protein kinase (MAPK) pathway in colorectal cancer: mutations and targeted therapy.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1207898

By:

Sommariva, Sara;
Berra, Silvia;
Biddau, Giorgia;
Caviglia, Giacomo;
Benvenuto, Federico;
Piana, Michele

Publication type:

Article

Generating synthetic multidimensional molecular time series data for machine learning: considerations.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1188009

By:

An, Gary;
Cockrell, Chase

Publication type:

Article

Distinct mechanisms underlie electrical coupling resonance and its interaction with membrane potential resonance.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1122433

By:

Xinping Li;
Itani, Omar;
Bucher, Dirk M.;
Rotstein, Horacio G.;
Nadim, Farzan

Publication type:

Article

Generating synthetic multidimensional molecular time series data for machine learning: considerations.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1188009

By:

An, Gary;
Cockrell, Chase

Publication type:

Article

Systems biology platform for efficient development and translation of multitargeted therapeutics.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1229532

By:

Azer, Karim;
Leaf, Irina

Publication type:

Article

Understanding multimorbidity requires sign-disease networks and higher-order interactions, a perspective.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1155599

By:

Hourican, Cillian;
Peeters, Geeske;
Melis, René J. F.;
Wezeman, Sandra L.;
Gill, Thomas M.;
Rikkert, Marcel G. M. Olde;
Quax, Rick

Publication type:

Article

A practical guide for the generation of model-based virtual clinical trials.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1174647

By:

Craig, Morgan;
Gevertz, Jana L.;
Kareva, Irina;
Wilkie, Kathleen P.

Publication type:

Article

A computational framework for identifying chemical compounds to bind Apolipoprotein E4 for Alzheimer's disease intervention.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1188430

By:

Tianhua Zhai;
Krass, Emily;
Fangyuan Zhang;
Zuyi Huang

Publication type:

Article

Mapping out the gut microbiota-dependent trimethylamine N-oxide super pathway for systems biology applications.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1074749

By:

Valenbreder, Isabel M. E.;
Balăn, Sonia;
Breuer, Marian;
Adriaens, Michiel E.

Publication type:

Article

Contribution of farms to the microbiota in the swine value chain.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1183868

By:

Laforge, Pascal;
Vincent, Antony T.;
Duchaine, Caroline;
Feutry, Perrine;
Dion-Fortier, Annick;
Plante, Pier-Luc;
Pouliot, Éric;
Fournaise, Sylvain;
Saucier, Linda

Publication type:

Article

Single-cell technologies for multimodal omics measurements.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1155990

By:

Dongsheng Bai;
Chenxu Zhu

Publication type:

Article

Network motifs and hypermotifs in TGFβ-induced epithelial to mesenchymal transition and metastasis.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1099951

By:

Bhavani, Gottumukkala Sai;
Palanisamy, Anbumathi

Publication type:

Article

Editorial: Education in systems biology 2022.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1176588

By:

Saccenti, Edoardo

Publication type:

Article

MEMMAL: A tool for expanding large-scale mechanistic models with machine learned associations and big datasets.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1099413

By:

Erdem, Cemal;
Birtwistle, Marc R.

Publication type:

Article

Batch correction and harmonization of -Omics datasets with a tunable median polish of ratio.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1092341

By:

Dammer, Eric B.;
Seyfried, Nicholas T.;
Johnson, Erik C. B.

Publication type:

Article

Understanding multimorbidity requires sign-disease networks and higher-order interactions, a perspective.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1155599

By:

Hourican, Cillian;
Peeters, Geeske;
Melis, René J. F.;
Wezeman, Sandra L.;
Gill, Thomas M.;
Rikkert, Marcel G. M. Olde;
Quax, Rick

Publication type:

Article

An approach to learn regulation to maximize growth and entropy production rates in metabolism.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.981866

By:

King, Ethan;
Holzer, Jesse;
North, Justin A.;
Cannon, William R.

Publication type:

Article

Application of perturbation gene expression profiles in drug discovery--From mechanism of action to quantitative modelling.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1126044

By:

Szalai, Bence;
Veres, Dániel V.

Publication type:

Article

Changes in multimorbidity burden over a 3-5 year period among people with HIV.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1136999

By:

Sukumaran, Luxsena;
De Francesco, Davide;
Winston, Alan;
Mallon, Patrick W. G.;
Doyle, Nicki;
Anderson, Jane;
Boffito, Marta;
Williams, Ian;
Post, Frank A.;
Vera, Jaime;
Sachikonye, Memory;
Johnson, Margaret A.;
Sabin, Caroline A.

Publication type:

Article

Investigating the comorbidity of COPD and tuberculosis, a computational study.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.940097

By:

Sershen, Cheryl L.;
Salim, Taha;
May, Elebeoba E.

Publication type:

Article

Illuminating HBV with multi-scale modeling.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 01, doi. 10.3389/fsysb.2023.1045754

By:

Means, Shawn A.;
Ali, Md A.;
Ho, Harvey

Publication type:

Article

Computational design of custom therapeutic cells to correct failing human cardiomyocytes.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1102467

By:

Tieu, Andrew;
Phillips, Katherine G.;
Costa, Kevin D.;
Mayourian, Joshua

Publication type:

Article

Synergistic effects of complex drug combinations in colorectal cancer cells predicted by logical modelling.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1112831

By:

Folkesson, Evelina;
Sakshaug, B. Cristoffer;
Hoel, Andrea D.;
Klinkenberg, Geir;
Flobak, Åsmund

Publication type:

Article

Editorial: Systems biology, women in science 2021/22: Data and model integration.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1134055

By:

Martínez, María Rodríguez;
Lao, Angelyn;
Torres, Leda

Publication type:

Article

Acute respiratory distress syndrome and acute lung injury in a trauma population with and without long bone fractures.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2022.1058603

By:

Larson, Julia L.;
Robertson, Henry T.;
Grey, Scott F.;
Schobel, Seth A.;
Potter, Benjamin K.;
Elster, Eric A.

Publication type:

Article

Clonal abundance patterns in hematopoiesis: Mathematical modeling and parameter estimation.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.893366

By:

Yunbei Pan;
D'Orsogna, Maria R.;
Min Tang;
Stiehl, Thomas;
Chou, Tom

Publication type:

Article

Systems biology of asphalt pollutants and their human molecular targets.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2022.928962

By:

Rozewski, Eran;
Taqi, Omran;
Fini, Elham H.;
Lewinski, Nastassja A.;
Klein-Seetharaman, Judith

Publication type:

Article

What can go wrong when observations are not independently and identically distributed: A cautionary note on calculating correlations on combined data sets from different experiments or conditions.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1042156

By:

Saccenti, Edoardo

Publication type:

Article

Maintenance of PKMζ-modulated synaptic efficacies despite protein turnover.

Published in:

2023

By:

Aslam, Naveed

Publication type:

Question & Answer

Quantitative systems modeling approaches towards model-informed drug development: Perspective through case studies.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2022.1063308

By:

Verma, Meghna;
Gall, Louis;
Biasetti, Jacopo;
Di Veroli, Giovanni Y.;
Pichardo-Almarza, Cesar;
Gibbs, Megan A.;
Kimko, Holly

Publication type:

Article

scMODD: A model-driven algorithm for doublet identification in single-cell RNA-sequencing data.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 01, doi. 10.3389/fsysb.2022.1082309

By:

Xinye Zhao;
Du, Alexander;
Peng Qiu

Publication type:

Article

An adaptive, negative feedback circuit in a biohybrid device reprograms dynamic networks of systemic inflammation in vivo.

Published in:

Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2022.926618

By:

Namas, Rami A.;
Mikheev, Maxim;
Yin, Jinling;
Barclay, Derek;
Jefferson, Bahiyyah;
Qi Mi;
Billiar, Timothy R.;
Zamora, Ruben;
Gerlach, Jorg;
Vodovotz, Yoram

Publication type:

Article