Works matching DE "MICROBIAL genes"
Results: 579
The bacterial composition signatures of perianal abscess and origin of infecting microbes.
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- PeerJ, 2025, p. 1, doi. 10.7717/peerj.18855
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Pepper power: short-term impact of pepper consumption on the gut bacteriome composition in healthy volunteers.
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- PeerJ, 2024, p. 1, doi. 10.7717/peerj.18707
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How do various strategies for returning residues change microbiota modulation: potential implications for soil health.
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- Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2024.1495682
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Reference-free structural variant detection in microbiomes via long-read co-assembly graphs.
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- Bioinformatics, 2024, v. 40, p. i58, doi. 10.1093/bioinformatics/btae224
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MiPRIME: an integrated and intelligent platform for mining primer and probe sequences of microbial species.
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- Bioinformatics, 2024, v. 40, n. 7, p. 1, doi. 10.1093/bioinformatics/btae429
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GENTANGLE: integrated computational design of gene entanglements.
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- Bioinformatics, 2024, v. 40, n. 7, p. 1, doi. 10.1093/bioinformatics/btae380
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GeNLP: a web tool for NLP-based exploration and prediction of microbial gene function.
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- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae034
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AdenPredictor: accurate prediction of the adenylation domain specificity of nonribosomal peptide biosynthetic gene clusters in microbial genomes.
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- Bioinformatics, 2023, v. 39, p. i40, doi. 10.1093/bioinformatics/btad235
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MIMOSA2: a metabolic network-based tool for inferring mechanism-supported relationships in microbiome‐metabolome data.
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- Bioinformatics, 2022, v. 38, n. 6, p. 1615, doi. 10.1093/bioinformatics/btac003
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GAMMA: a tool for the rapid identification, classification and annotation of translated gene matches from sequencing data.
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- Bioinformatics, 2022, v. 38, n. 2, p. 546, doi. 10.1093/bioinformatics/btab607
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A critical assessment of gene catalogs for metagenomic analysis.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2848, doi. 10.1093/bioinformatics/btab216
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PhyloMagnet: fast and accurate screening of short-read meta-omics data using gene-centric phylogenetics.
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- Bioinformatics, 2020, v. 36, n. 6, p. 1718, doi. 10.1093/bioinformatics/btz799
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phylogenize: correcting for phylogeny reveals genes associated with microbial distributions.
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- Bioinformatics, 2020, v. 36, n. 4, p. 1289, doi. 10.1093/bioinformatics/btz722
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RANGER-DTL 2.0: rigorous reconstruction of gene-family evolution by duplication, transfer and loss.
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- Bioinformatics, 2018, v. 34, n. 18, p. 3214, doi. 10.1093/bioinformatics/bty314
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A Full-Ocean-Depth Sampler for Hadal Microbes Based on Multistage Membrane Filters With In-Situ Preservation.
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- Marine Technology Society Journal, 2021, v. 55, n. 2, p. 25, doi. 10.4031/mtsj.55.2.10
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Recovery of the gut microbiome following enteric infection and persistence of antimicrobial resistance genes in specific microbial hosts.
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- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-42822-7
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Recovery of the gut microbiome following enteric infection and persistence of antimicrobial resistance genes in specific microbial hosts.
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- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-42822-7
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Human milk oligosaccharides modulate the intestinal microbiome of healthy adults.
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- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-41040-5
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Human milk oligosaccharides modulate the intestinal microbiome of healthy adults.
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- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-41040-5
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Contribution of endophytes towards improving plant bioactive metabolites: a rescue option against red-taping of medicinal plants.
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- Frontiers in Plant Science, 2023, p. 1, doi. 10.3389/fpls.2023.1248319
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Transcriptome-based analysis of the effects of compound microbial agents on gene expression in wheat roots and leaves under salt stress.
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- Frontiers in Plant Science, 2023, p. 1, doi. 10.3389/fpls.2023.1109077
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Soil metagenomic analysis on changes of functional genes and microorganisms involved in nitrogen-cycle processes of acidified tea soils.
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- Frontiers in Plant Science, 2022, v. 13, p. 01, doi. 10.3389/fpls.2022.998178
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Regulatory Effects of Combined Dietary Supplementation With Essential Oils and Organic Acids on Microbial Communities of Cobb Broilers.
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- Frontiers in Microbiology, 2022, v. 12, p. 1, doi. 10.3389/fmicb.2021.814626
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Advances in Metagenomics and Its Application in Environmental Microorganisms.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.766364
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Taxonomy and Functional Diversity in the Fecal Microbiome of Beef Cattle Reared in Brazilian Traditional and Semi-Intensive Production Systems.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.768480
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Metagenomic Analysis Reveals New Microbiota Related to Fiber Digestion in Pigs.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.746717
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Niche Differentiation of Arsenic-Transforming Microbial Groups in the Rice Rhizosphere Compartments as Impacted by Water Management and Soil-Arsenic Concentrations.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.736751
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Drought Stress Triggers Shifts in the Root Microbial Community and Alters Functional Categories in the Microbial Gene Pool.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.744897
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Comparison of 16S rRNA Gene Based Microbial Profiling Using Five Next-Generation Sequencers and Various Primers.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.715500
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Compositional Data Analysis of Microbiome and Any-Omics Datasets: A Validation of the Additive Logratio Transformation.
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- Frontiers in Microbiology, 2021, p. 1, doi. 10.3389/fmicb.2021.727398
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Enhanced Recovery of Microbial Genes and Genomes From a Marine Water Column Using Long-Read Metagenomics.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.708782
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Mining for Perchlorate Resistance Genes in Microorganisms From Sediments of a Hypersaline Pond in Atacama Desert, Chile.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.723874
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Whole-Genome Metagenomic Analysis of the Gut Microbiome in HIV-1-Infected Individuals on Antiretroviral Therapy.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.667718
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The Macleaya cordata Symbiont: Revealing the Effects of Plant Niches and Alkaloids on the Bacterial Community.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.681210
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Molecular Mechanisms Influencing Bacterial Conjugation in the Intestinal Microbiota.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.673260
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Variation of Metagenome From Feedstock to Digestate in Full-Scale Biogas Plants.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.660225
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Metagenomic Data Assembly – The Way of Decoding Unknown Microorganisms.
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- Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2021.613791
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Microbial Metabolic Genes Crucial for S. aureus Biofilms: An Insight From Re-analysis of Publicly Available Microarray Datasets.
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- Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.607002
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Enhanced Metabolic Potentials and Functional Gene Interactions of Microbial Stress Responses to a 4,100-m Elevational Increase in Freshwater Lakes.
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- Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.595967
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Comparing the taxonomic and functional profiles of gut microbiota from three pig breeds by metagenomic sequencing.
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- Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.999535
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Gut Microbiota Dysbiosis and Increased Plasma LPS and TMAO Levels in Patients With Preeclampsia.
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- Frontiers in Cellular & Infection Microbiology, 2019, v. 9, p. 1, doi. 10.3389/fcimb.2019.00409
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Insights into the Donkey Hindgut Microbiome Using Metagenome-Assembled Genomes.
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- Animals (2076-2615), 2024, v. 14, n. 24, p. 3625, doi. 10.3390/ani14243625
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The Canine Gut Health: The Impact of a New Feed Supplement on Microbiota Composition.
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- Animals (2076-2615), 2024, v. 14, n. 8, p. 1189, doi. 10.3390/ani14081189
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Analysis of Gut Microbial Communities and Resistance Genes in Pigs and Chickens in Central China.
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- Animals (2076-2615), 2022, v. 12, n. 23, p. 3404, doi. 10.3390/ani12233404
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Insight into the Fecal Microbiota Signature Associated with Growth Specificity in Korean Jindo Dogs Using 16S rRNA Sequencing.
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- Animals (2076-2615), 2022, v. 12, n. 19, p. 2499, doi. 10.3390/ani12192499
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Habitat Elevation Shapes Microbial Community Composition and Alter the Metabolic Functions in Wild Sable (Martes zibellina) Guts.
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- Animals (2076-2615), 2021, v. 11, n. 3, p. 865, doi. 10.3390/ani11030865
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Comparative Efficacy of Selected Phytobiotics with Halquinol and Tetracycline on Gut Morphology, Ileal Digestibility, Cecal Microbiota Composition and Growth Performance in Broiler Chickens.
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- Animals (2076-2615), 2020, v. 10, n. 11, p. 2150, doi. 10.3390/ani10112150
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A Comparative Metagenomics Study on Gastrointestinal Microbiota in Amphibious Mudskippers and Other Vertebrate Animals.
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- Animals (2076-2615), 2019, v. 9, n. 9, p. 660, doi. 10.3390/ani9090660
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Functional annotation of enzyme-encoding genes using deep learning with transformer layers.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-43216-z
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Delayed gut microbiota maturation in the first year of life is a hallmark of pediatric allergic disease.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40336-4
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