Works matching DE "DINUCLEOTIDES"

Results: 453

Capturing snapshots of APE1 processing DNA damage.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 11, p. 924, doi. 10.1038/nsmb.3105

By:

Freudenthal, Bret D;
Beard, William A;
Cuneo, Matthew J;
Dyrkheeva, Nadezhda S;
Wilson, Samuel H

Publication type:

Article

The structural basis for the sensing and binding of cyclic di-GMP by STING.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 7, p. 728, doi. 10.1038/nsmb.2333

By:

Huang, Yi-He;
Liu, Xiang-Yu;
Du, Xiao-Xia;
Jiang, Zheng-Fan;
Su, Xiao-Dong

Publication type:

Article

Structure of STING bound to cyclic di-GMP reveals the mechanism of cyclic dinucleotide recognition by the immune system.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 7, p. 722, doi. 10.1038/nsmb.2331

By:

Shu, Chang;
Yi, Guanghui;
Watts, Tylan;
Kao, C Cheng;
Li, Pingwei

Publication type:

Article

Enzymatic Syntheses and Applications of Fluorescent Cyclic Dinucleotides.

Published in:

Chemistry - A European Journal, 2020, v. 26, n. 27, p. 6076, doi. 10.1002/chem.202001194

By:

Li, Yao;
Ludford, Paul T.;
Fin, Andrea;
Rovira, Alexander R.;
Tor, Yitzhak

Publication type:

Article

Differential DNA methylation landscape of miRNAs genes in mice liver fibrosis.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-09416-6

By:

Li, Deming;
Yang, Wentong;
Pang, Jiaojiao;
Yu, Guoying

Publication type:

Article

Evolutionary mechanism and biological functions of 8-mers containing CG dinucleotide in yeast.

Published in:

Chromosome Research, 2017, v. 25, n. 2, p. 173, doi. 10.1007/s10577-017-9554-z

By:

Zheng, Yan;
Li, Hong;
Wang, Yue;
Meng, Hu;
Zhang, Qiang;
Zhao, Xiaoqing

Publication type:

Article

Agonists and inhibitors of the STING pathway: Potential agents for immunotherapy.

Published in:

Medicinal Research Reviews, 2020, v. 40, n. 3, p. 1117, doi. 10.1002/med.21649

By:

Wu, Jun‐Jun;
Zhao, Lang;
Hu, Hong‐Guo;
Li, Wen‐Hao;
Li, Yan‐Mei

Publication type:

Article

Fast motif matching revisited: high-order PWMs, SNPs and indels.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 514, doi. 10.1093/bioinformatics/btw683

By:

Korhonen, Janne H.;
Palin, Kimmo;
Taipale, Jussi;
Ukkonen, Esko

Publication type:

Article

iRSpot-EL: identify recombination spots with an ensemble learning approach.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 35, doi. 10.1093/bioinformatics/btw539

By:

Bin Liu;
Shanyi Wang;
Ren Long;
Kuo-Chen Chou

Publication type:

Article

NCS: incorporating positioning data to quantify nucleosome stability in yeast.

Published in:

Bioinformatics, 2014, v. 30, n. 6, p. 761, doi. 10.1093/bioinformatics/btt621

By:

Chiang, Jung-Hsien;
Lin, Chan-Hsien

Publication type:

Article

NucleoFinder: a statistical approach for the detection of nucleosome positions.

Published in:

Bioinformatics, 2013, v. 29, n. 6, p. 711, doi. 10.1093/bioinformatics/bts719

By:

Becker, Jeremie;
Yau, Christopher;
Hancock, John M.;
Holmes, Christopher C.

Publication type:

Article

RIsearch: fast RNA–RNA interaction search using a simplified nearest-neighbor energy model.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2738, doi. 10.1093/bioinformatics/bts519

By:

Wenzel, Anne;
Akbaşli, Erdinç;
Gorodkin, Jan

Publication type:

Article

Exchange interaction in short-lived flavine adenine dinucleotide biradical in aqueous solution revisited by CIDNP (chemically induced dynamic nuclear polarization) and nuclear magnetic relaxation dispersion.

Published in:

Magnetic Resonance, 2021, v. 2, n. 1, p. 139, doi. 10.5194/mr-2-139-2021

By:

Zhukov, Ivan V.;
Kiryutin, Alexey S.;
Panov, Mikhail S.;
Fishman, Natalya N.;
Morozova, Olga B.;
Lukzen, Nikita N.;
Ivanov, Konstantin L.;
Vieth, Hans-Martin;
Sagdeev, Renad Z.;
Yurkovskaya, Alexandra V.

Publication type:

Article

Multi-species and multi-tissue methylation clocks for age estimation in toothed whales and dolphins.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02179-x

By:

Robeck, Todd R.;
Fei, Zhe;
Lu, Ake T.;
Haghani, Amin;
Jourdain, Eve;
Zoller, Joseph A.;
Li, Caesar Z.;
Steinman, Karen J.;
DiRocco, Stacy;
Schmitt, Todd;
Osborn, Steve;
Van Bonn, Bill;
Katsumata, Etsuko;
Mergl, June;
Almunia, Javier;
Rodriguez, Magdalena;
Haulena, Martin;
Dold, Christopher;
Horvath, Steve

Publication type:

Article

DNA Elements: Dinucleotide repeats form an enhancer signature.

Published in:

Nature Reviews Genetics, 2014, v. 15, n. 6, p. 363, doi. 10.1038/nrg3750

By:

Lokody, Isabel

Publication type:

Article

Age at onset of different pubertal signs in boys and girls and differential DNA methylation at age 10 and 18 years: an epigenome-wide follow-up study.

Published in:

Human Reproduction Open, 2020, v. 2020, n. 2, p. 1, doi. 10.1093/hropen/hoaa006

By:

Chen, Su;
Refaey, Hala;
Mukherjee, Nandini;
Solatikia, Farnaz;
Jiang, Yu;
Arshad, S Hasan;
Ewart, Susan;
Holloway, John W;
Zhang, Hongmei;
Karmaus, Wilfried

Publication type:

Article

Cobalt(II) Chloride Modifies the Phenotype of Macrophage Activation.

Published in:

Basic & Clinical Pharmacology & Toxicology, 2017, v. 121, n. 2, p. 98, doi. 10.1111/bcpt.12773

By:

Kumanto, Mona;
Paukkeri, Erja‐Leena;
Nieminen, Riina;
Moilanen, Eeva

Publication type:

Article

Identification and characterization of microsatellites in isolates of Peronospora tabacina collected in tobaccoproducing states of Mexico.

Published in:

Revista Mexicana de Fitopatología, 2023, v. 41, n. 2, p. 229, doi. 10.18781/R.MEX.FIT.2206-5

By:

Margarita Ramos-Barraza, Yadira;
Cruz-Lachica, Isabel;
Manuel Tovar-Pedraza, Juan;
Benigno Valdez-Torres, José;
Márquez-Zequera, Isidro;
Alfredo Osuna-García, Luis;
Gómez-González, Guillermo;
Saúl García-Estrada, Raymundo

Publication type:

Article

Microsatellite Content in 397 Nuclear Exons and Their Flanking Regions in the Fern Family Ophioglossaceae.

Published in:

Plants (2223-7747), 2024, v. 13, n. 5, p. 713, doi. 10.3390/plants13050713

By:

Koubínová, Darina;
Grant, Jason R.

Publication type:

Article

Basic Characteristics of Flower Transcriptome Data and Derived Novel EST-SSR Markers of Luculia yunnanensis , an Endangered Species Endemic to Yunnan, Southwestern China.

Published in:

Plants (2223-7747), 2022, v. 11, n. 9, p. 1204, doi. 10.3390/plants11091204

By:

Zhang, Yao;
Liu, Xi;
Li, Yuying;
Liu, Xiongfang;
Ma, Hong;
Qu, Suping;
Li, Zhenghong

Publication type:

Article

pH sensitive nanoliposomes co-encapsulated with cyclic di-nucleotides and CpG ODN enhances Th1-biased immunity.

Published in:

Turkish Journal of Immunology, 2016, v. 4, p. 67

By:

Bayyurt, Banu;
Gursel, Ihsan

Publication type:

Article

Inhibition of NADPH oxidase 2 induces apoptosis in osteosarcoma: The role of reactive oxygen species in cell proliferation.

Published in:

Oncology Letters, 2018, v. 15, n. 5, p. 7955, doi. 10.3892/ol.2018.8291

By:

Kitamoto, Kazumasa;
Miura, Yuji;
Karnan, Sivasundaram;
Ota, Akinobu;
Konishi, Hiroyuki;
Hosokawa, Yoshitaka;
Sato, Keiji

Publication type:

Article

IL-10 in the microenvironment of HNSCC inhibits the CpG ODN-induced IFN-α secretion of pDCs.

Published in:

Oncology Letters, 2018, v. 15, n. 3, p. 3985, doi. 10.3892/ol.2018.7772

By:

Bruchhage, Karl-Ludwig;
Heinrichs, Sabrina;
WollENberg, Barbara;
Pries, Ralph

Publication type:

Article

Biophysical Interactions Underpin the Emergence of Information in the Genetic Code.

Published in:

Life (2075-1729), 2023, v. 13, n. 5, p. 1129, doi. 10.3390/life13051129

By:

Halpern, Aaron;
Bartsch, Lilly R.;
Ibrahim, Kaan;
Harrison, Stuart A.;
Ahn, Minkoo;
Christodoulou, John;
Lane, Nick

Publication type:

Article

Selective Loss of Responsiveness to Exogenous but Not Endogenous Cyclic-Dinucleotides in Mice Expressing STING-R231H.

Published in:

Frontiers in Immunology, 2020, p. 1, doi. 10.3389/fimmu.2020.00238

By:

Walker, Melissa M.;
Kim, Soojin;
Crisler, William J.;
Nguyen, Kimberlie;
Lenz, Laurel L.;
Cambier, John C.;
Getahun, Andrew

Publication type:

Article

Retraction: Stimulator of Interferon Genes in Classical Dendritic Cells Controls Mucosal Th17 Responses to Cyclic Dinucleotides for Host Defenses Against Microbial Infections in Gut.

Published in:: Frontiers in Immunology, 2019, p. N.PAG, doi. 10.3389/fimmu.2019.01468
Publication type:: Article

Erratum to: A thymine-adenine dinucleotide repeat polymorphism near IL28B is associated with spontaneous clearance of hepatitis C virus.

Published in:

2016

By:

Hiramine, Satoshi;
Sugiyama, Masaya;
Furusyo, Norihiro;
Uto, Hirofumi;
Ido, Akio;
Tsubouchi, Hirohito;
Watanabe, Hisayoshi;
Ueno, Yoshiyuki;
Korenaga, Masaaki;
Murata, Kazumoto;
Masaki, Naohiko;
Hayashi, Jun;
Thomas, David;
Mizokami, Masashi;
Thomas, David L

Publication type:

corrected article

Sleeping Beauty transposon integrates into non-TA dinucleotides.

Published in:

Mobile DNA, 2018, v. 9, p. 1, doi. 10.1186/s13100-018-0113-8

By:

Yabin Guo;
Yin Zhang;
Kaishun Hu

Publication type:

Article

TGTT and AACA: two transcriptionally active LTR retrotransposon subfamilies with a specific LTR structure and horizontal transfer in four Rosaceae species.

Published in:

Mobile DNA, 2017, v. 8, p. 1, doi. 10.1186/s13100-017-0098-8

By:

Hao Yin;
Xiao Wu;
Dongqing Shi;
Yangyang Chen;
Kaijie Qi;
Zhengqiang Ma;
Shaoling Zhang

Publication type:

Article

Moderation of Structural DNA Properties by Coupled Dinucleotide Contents in Eukaryotes.

Published in:

Genes, 2023, v. 14, n. 3, p. 755, doi. 10.3390/genes14030755

By:

Sievers, Aaron;
Sauer, Liane;
Bisch, Marc;
Sprengel, Jan;
Hausmann, Michael;
Hildenbrand, Georg

Publication type:

Article

Nucleotide Composition of Ultra-Conserved Elements Shows Excess of GpC and Depletion of GG and CC Dinucleotides.

Published in:

Genes, 2022, v. 13, n. 11, p. 2053, doi. 10.3390/genes13112053

By:

Fedorova, Larisa;
Mulyar, Oleh A.;
Lim, Jan;
Fedorov, Alexei

Publication type:

Article

Alternative Promoters of GRIK2 (GluR6) Gene in Human Carcinoma Cell Lines Are Regulated by Differential Methylation of CpG Dinucleotides.

Published in:

Genes, 2022, v. 13, n. 3, p. 490, doi. 10.3390/genes13030490

By:

Zhawar, Vikramjit K.;
Kandpal, Raj P.;
Athwal, Raghbir S.

Publication type:

Article

Epigenetic Contribution and Genomic Imprinting Dlk1-Dio3 miRNAs in Systemic Lupus Erythematosus.

Published in:

Genes, 2021, v. 12, n. 5, p. 680, doi. 10.3390/genes12050680

By:

Dai, Rujuan;
Wang, Zhuang;
Ahmed, S. Ansar;
Cavalieri, Vincenzo

Publication type:

Article

Development and Transferability of EST-SSR Markers for Pinus koraiensis from Cold-Stressed Transcriptome through Illumina Sequencing.

Published in:

Genes, 2020, v. 11, n. 5, p. 500, doi. 10.3390/genes11050500

By:

Li, Xiang;
Liu, Xiaoting;
Wei, Jiatong;
Li, Yan;
Tigabu, Mulualem;
Zhao, Xiyang

Publication type:

Article

A DNA Structural Alphabet Distinguishes Structural Features of DNA Bound to Regulatory Proteins and in the Nucleosome Core Particle.

Published in:

Genes, 2017, v. 8, n. 10, p. 278, doi. 10.3390/genes8100278

By:

Schneider, Bohdan;
Božíková, Paulína;
Čech, Petr;
Svozil, Daniel;
Černý, Jĭří

Publication type:

Article

Predicting Variation of DNA Shape Preferences in Protein-DNA Interaction in Cancer Cells with a New Biophysical Model.

Published in:

Genes, 2017, v. 8, n. 9, p. 233, doi. 10.3390/genes8090233

By:

Batmanov, Kirill;
Wang, Junbai

Publication type:

Article

Insights into the genetic and host adaptability of emerging porcine circovirus 3.

Published in:

Virulence, 2018, v. 9, n. 1, p. 1301, doi. 10.1080/21505594.2018.1492863

By:

Li, Gairu;
Wang, Huijuan;
Wang, Shilei;
Xing, Gang;
Zhang, Cheng;
Zhang, Wenyan;
Liu, Jie;
Zhang, Junyan;
Su, Shuo;
Zhou, Jiyong

Publication type:

Article

Hypervirulent Clostridium difficile ribotypes are CpG depleted.

Published in:

Virulence, 2018, v. 9, n. 1, p. 1422, doi. 10.1080/21505594.2018.1509669

By:

Kamuju, Vinay;
Kumar, Santosh;
Khan, Wajihul Hasan;
Vivekanandan, Perumal

Publication type:

Article

Prognostic significance of CDH13 hypermethylation and mRNA in NSCLC.

Published in:

OncoTargets & Therapy, 2014, v. 7, p. 1987, doi. 10.2147/OTT.S67355

By:

Ruilin Xue;
Cuili Yang;
Fang Zhao;
Dejia Li

Publication type:

Article

A quantum physics layer of epigenetics: a hypothesis deduced from charge transfer and chirality-induced spin selectivity of DNA.

Published in:

Clinical Epigenetics, 2023, v. 15, n. 1, p. 1, doi. 10.1186/s13148-023-01560-3

By:

Siebert, Reiner;
Ammerpohl, Ole;
Rossini, Mirko;
Herb, Dennis;
Rau, Sven;
Plenio, Martin B.;
Jelezko, Fedor;
Ankerhold, Joachim

Publication type:

Article

Prediction of donor splice sites using random forest with a new sequence encoding approach.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0086-4

By:

Kumar Meher, Prabina;
Kumar Sahu, Tanmaya;
Ramakrishna Rao, Atmakuri

Publication type:

Article

Genome survey sequencing for the characterization of genetic background of Dracaena cambodiana and its defense response during dragon’s blood formation.

Published in:

PLoS ONE, 2018, v. 13, n. 12, p. 1, doi. 10.1371/journal.pone.0209258

By:

Ding, Xupo;
Mei, Wenli;
Huang, Shengzhuo;
Wang, Hui;
Zhu, Jiahong;
Hu, Wei;
Ding, Zehong;
Tie, Weiwei;
Peng, Shiqing;
Dai, Haofu

Publication type:

Article

iMapSplice: Alleviating reference bias through personalized RNA-seq alignment.

Published in:

PLoS ONE, 2018, v. 13, n. 8, p. 1, doi. 10.1371/journal.pone.0201554

By:

Liu, Xinan;
Liu, Jinze;
MacLeod, James N.

Publication type:

Article

Thio- and Seleno-Dioxaphosphorinane-Constrained Dinucleotides (D-CNA): Synthesis and Conformational Study.

Published in:

European Journal of Organic Chemistry, 2017, v. 2017, n. 11, p. 1450, doi. 10.1002/ejoc.201601568

By:

Gerland, Béatrice;
Addamiano, Claudia;
Renard, Brice‐Loïc;
Payrastre, Corinne;
Gopaul, Deshmukh;
Escudier, Jean‐Marc

Publication type:

Article

mRNA Cap Modification through Carbamate Chemistry: Synthesis of Amino- and Carboxy-Functionalised Cap Analogues Suitable for Labelling and Bioconjugation.

Published in:

European Journal of Organic Chemistry, 2015, v. 2015, n. 28, p. 6153, doi. 10.1002/ejoc.201500672

By:

Warminski, Marcin;
Warminska, Zofia;
Kowalska, Joanna;
Jemielity, Jacek

Publication type:

Article

Synthesis and Stability of a 2′- O-[ N-(Aminoethyl)carbamoyl]methyladenosine-Containing Dinucleotide.

Published in:

European Journal of Organic Chemistry, 2013, v. 2013, n. 31, p. 7184, doi. 10.1002/ejoc.201300699

By:

Milton, Stefan;
Ander, Charlotte;
Honcharenko, Dmytro;
Honcharenko, Małgorzata;
Yeheskiely, Esther;
Strömberg, Roger

Publication type:

Article

The structure of monoamine oxidases: past, present, and future.

Published in:

Journal of Neural Transmission, 2018, v. 125, n. 11, p. 1567, doi. 10.1007/s00702-018-1915-z

By:

Iacovino, Luca Giacinto;
Magnani, Francesca;
Binda, Claudia

Publication type:

Article

A bacterial cyclic dinucleotide activates the cytosolic surveillance pathway and mediates innate resistance to tuberculosis.

Published in:

Nature Medicine, 2015, v. 21, n. 4, p. 401, doi. 10.1038/nm.3813

By:

Dey, Bappaditya;
Dey, Ruchi Jain;
Cheung, Laurene S;
Pokkali, Supriya;
Guo, Haidan;
Lee, Jong-Hee;
Bishai, William R

Publication type:

Article

Great Efficiency of Nucleosides as Organizing Tools.

Published in:

Croatica Chemica Acta, 2017, v. 90, n. 4, p. 595, doi. 10.5562/cca3247

By:

Merkaš, Sonja;
Bouatra, Souhaila;
Rein, Régis;
Piantanida, Ivo;
Žinić, Mladen;
Solladié, Nathalie

Publication type:

Article

A 20q13.2 cancer amplicon: novel sequence analysis tools.

Published in:

2001

By:

Volik, Stanislav;
Gray, Joe;
Kowbel, David;
Collins, Colin

Publication type:

Abstract