Works matching DE "NUCLEOTIDE analysis"

Results: 966

Molecular prejudice: RNA discrimination against purines allows response to a cellular alarm.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 10, p. 754, doi. 10.1038/nsmb.3095

By:

Ruehle, Marisa D;
Kieft, Jeffrey S

Publication type:

Article

The large conformational changes of Hsp90 are only weakly coupled to ATP hydrolysis.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 3, p. 281, doi. 10.1038/nsmb.1557

By:

Mickler, Moritz;
Hessling, Martin;
Ratzke, Christoph;
Buchner, Johannes;
Hugel, Thorsten

Publication type:

Article

Simplifying a complex code.

Published in:

Nature Structural & Molecular Biology, 2008, v. 15, n. 6, p. 542, doi. 10.1038/nsmb0608-542

By:

Turner, Bryan M.

Publication type:

Article

HIV-2 genomic RNA contains a novel type of IRES located downstream of its initiation codon.

Published in:

Nature Structural & Molecular Biology, 2005, v. 12, n. 11, p. 1001, doi. 10.1038/nsmb1011

By:

Herbreteau, Cécile H.;
Weill, Laure;
Décimo, Didier;
Prévôt, Déborah;
Darlix, Jean-Luc;
Sargueil, Bruno;
Ohlmann, Théophile

Publication type:

Article

Sequencers and SNP Detectors Take On Rare Diseases.

Published in:

Bio-IT World, 2004, v. 3, n. 6, p. S9

By:

Lin-Zuo Pham

Publication type:

Article

Autosomal Similarity Revealed by Eukaryotic Genomic Comparison.

Published in:

Journal of Biological Physics, 2004, v. 30, n. 4, p. 305, doi. 10.1007/s10867-004-0996-0

By:

Zhen Qi;
Yan Cui;
Weiwu Fang;
Lunjiang Ling;
Runsheng Chen

Publication type:

Article

Occurrence of Honeysuckle Yellow Vein Virus (HYVV) containing a monopartite DNA-A genome in Korea.

Published in:

European Journal of Plant Pathology, 2011, v. 129, n. 3, p. 361, doi. 10.1007/s10658-010-9716-8

By:

Yuan Wang;
Jing Ji;
Tae-Kyun Oh;
Sung Oh;
Sue Kim;
Hyun Lee;
Myoung Shim;
Chang Choi;
Seong Kim;
Il-Seop Kim;
Young Kim

Publication type:

Article

Annotation and characterization of Cd-responsive metal transporter genes in rapeseed ( Brassica napus).

Published in:

BioMetals, 2018, v. 31, n. 1, p. 107, doi. 10.1007/s10534-017-0072-4

By:

Zhang, Xian Duo;
Meng, Jin Guo;
Zhao, Kai Xuan;
Chen, Xi;
Yang, Zhi Min

Publication type:

Article

An SNP panel for the analysis of paternally inherited alleles in maternal plasma using ion Torrent PGM.

Published in:

International Journal of Legal Medicine, 2018, v. 132, n. 2, p. 343, doi. 10.1007/s00414-017-1594-6

By:

Yang, Donggui;
Liang, Hao;
Sun, Hongyu;
Ou, Xueling;
Lin, Shaobin;
Wu, Jianzhu;
Li, Qing;
Ma, Xiaoyan;
Chen, Qingqing;
Gao, Jun

Publication type:

Article

Tri-allelic patterns at the D7S820 locus detected in two generations of a Chinese family.

Published in:

International Journal of Legal Medicine, 2016, v. 130, n. 1, p. 23, doi. 10.1007/s00414-015-1166-6

By:

Jiang, Erlie;
Pan, Jie;
Han, Mingzhe;
Chen, Liang;
Ma, Qiaoling;
Wei, Jialin;
Huang, Yong;
Feng, Sizhou;
Sun, Qin;
Xiao, Peili;
Zheng, Zhongzheng

Publication type:

Article

Reduced-volume and low-volume typing of Y-chromosomal SNPs to obtain Finnish Y-chromosomal compound haplotypes.

Published in:

International Journal of Legal Medicine, 2009, v. 123, n. 5, p. 413, doi. 10.1007/s00414-009-0358-3

By:

Heinrich, Marielle;
Braun, Tina;
Sänger, Timo;
Saukko, Pekka;
Lutz-Bonengel, Sabine;
Schmidt, Ulrike

Publication type:

Article

Population data on the seven short tandem repeat loci D4S2366, D6S474, D14S608, D19S246, D20S480, D21S226 and D22S689 in a German population.

Published in:

International Journal of Legal Medicine, 2007, v. 121, n. 1, p. 78

By:

Dorit Becker;
Dorit Vogelsang;
Werner Brabetz

Publication type:

Article

Prevalence of UGT1A9 and UGT2B7 nonsynonymous single nucleotide polymorphisms in West African, Papua New Guinean, and North American populations.

Published in:

European Journal of Clinical Pharmacology, 2007, v. 63, n. 1, p. 1, doi. 10.1007/s00228-006-0206-z

By:

Mehlotra, Rajeev K.;
Bockarie, Moses J.;
Zimmerman, Peter A.

Publication type:

Article

Sensor combination and chemometric variable selection for online monitoring of Streptomyces coelicolor fed-batch cultivations.

Published in:

Applied Microbiology & Biotechnology, 2010, v. 86, n. 6, p. 1745, doi. 10.1007/s00253-009-2412-y

By:

Ödman, Peter;
Johansen, Claus;
Olsson, Lisbeth;
Gernaey, Krist V.;
Lantz, Anna

Publication type:

Article

The gene encoding γ-actin from the cephalosporin producer Acremonium chrysogenum.

Published in:

Applied Microbiology & Biotechnology, 2000, v. 54, n. 6, p. 786

By:

Díez, B.;
Velasco, J.;
Marcos, A. T.;
Rodríguez, M.;
De la Fuente, J. L.;
Barredo, J. L.

Publication type:

Article

Identification of Amycolatopsis sp. strain HR167 genes, involved in the bioconversion of ferulic acid to vanillin.

Published in:

Applied Microbiology & Biotechnology, 2000, v. 54, n. 6, p. 799, doi. 10.1007/s002530000431

By:

Achterholt, S.;
Priefert, H.;
Steinbüchel, A.

Publication type:

Article

A phylogenetic analysis of the genusPsathyrostachys(Poaceae) based on one nuclear gene, three plastid genes, and morphology.

Published in:

Plant Systematics & Evolution, 2004, v. 249, n. 1/2, p. 99, doi. 10.1007/s00606-004-0196-1

By:

Petersen, G.;
Seberg, O.;
Baden, C.

Publication type:

Article

Phylogeny of the Juncaceae based on rbcL sequences, with special emphasis on Luzula DC. and Juncus L.

Published in:

Plant Systematics & Evolution, 2003, v. 240, n. 1-4, p. 133, doi. 10.1007/s00606-003-0001-6

By:

Drábková, L.;
Kirschner, J.;
Seberg, O.;
Petersen, G.;
Vlček, Č.

Publication type:

Article

Ancient DNA studies: new perspectives on old samples.

Published in:

Genetics Selection Evolution, 2012, v. 44, n. 6, p. 1, doi. 10.1186/1297-9686-44-21

By:

Rizzi, Ermanno;
Lari, Martina;
Gigli, Elena;
De Bellis, Gianluca;
Caramelli, David

Publication type:

Article

Selection of a reference sequence for the determination of nucleotide sequences in DNA molecules.

Published in:

Measurement Techniques, 2012, v. 54, n. 12, p. 1408, doi. 10.1007/s11018-012-9903-4

By:

Golubev, S.;
Kononogov, S.;
Ravin, N.;
Skryabin, K.

Publication type:

Article

A pilot study on the molecular phylogeny of Drepanoidea (Insecta: Lepidoptera) inferred from the nuclear gene EF-1α and the mitochondrial gene COI.

Published in:

Bulletin of Entomological Research, 2010, v. 100, n. 2, p. 207, doi. 10.1017/S0007485309990162

By:

Wu, C. G.;
Han, H. X.;
Xue, D. Y.

Publication type:

Article

Cryptic species within Anopheles longipalpisfrom southern Africa and phylogenetic comparison with members of the An. funestusgroup.

Published in:: Bulletin of Entomological Research, 2009, v. 99, n. 1, p. 41, doi. 10.1017/S0007485308006123
Publication type:: Article

Genotyping inversions and tandem duplications.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 4015, doi. 10.1093/bioinformatics/btx020

By:

Ebler, Jana;
Schönhuth, Alexander;
Marschall, Tobias

Publication type:

Article

EUPAN enables pan-genome studies of a large number of eukaryotic genomes.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2408, doi. 10.1093/bioinformatics/btx170

By:

Zhiqiang Hu;
Chen Sun;
Kuang-Chen Lu;
Xixia Chu;
Yue Zhao;
Jinyuan Lu;
Jianxin Shi;
Chaochun Wei

Publication type:

Article

Kart: a divide-and-conquer algorithm for NGS read alignment.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2281, doi. 10.1093/bioinformatics/btx189

By:

Hsin-Nan Lin;
Wen-Lian Hsu

Publication type:

Article

VCNet: vector-based gene co-expression network construction and its application to RNA-seq data.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2173, doi. 10.1093/bioinformatics/btx131

By:

Zengmiao Wang;
Huaying Fang;
Leung-Sang Tang, Nelson;
Minghua Deng

Publication type:

Article

LAMSA: fast split read alignment with long approximate matches.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 192, doi. 10.1093/bioinformatics/btw594

By:

Bo Liu;
Yan Gao;
Yadong Wang

Publication type:

Article

PSSV: a novel pattern-based probabilistic approach for somatic structural variation identification.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 177, doi. 10.1093/bioinformatics/btw605

By:

Xi Chen;
Xu Shi;
Hilakivi-Clarke, Leena;
Shajahan-Haq, Ayesha N.;
Clarke, Robert;
Jianhua Xuan

Publication type:

Article

ReliableGenome: annotation of genomic regions with high/low variant calling concordance.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 155, doi. 10.1093/bioinformatics/btw587

By:

Popitsch, Niko;
Schuh, Anna;
Taylor, Jenny C.

Publication type:

Article

Beta-Poisson model for single-cell RNA-seq data analyses.

Published in:

Bioinformatics, 2016, v. 32, n. 14, p. 2128, doi. 10.1093/bioinformatics/btw202

By:

Vu, Trung Nghia;
Wills, Quin F.;
Kalari, Krishna R.;
Nifang Niu;
Liewei Wang;
Rantalainen, Mattias;
Pawitan, Yudi

Publication type:

Article

Genome assembly from synthetic long read clouds.

Published in:

Bioinformatics, 2016, v. 32, n. 12, p. i216, doi. 10.1093/bioinformatics/btw267

By:

Kuleshov, Volodymyr;
Snyder, Michael P.;
Batzoglou, Serafim

Publication type:

Article

Utilizing the Jaccard index to reveal population stratification in sequencing data: a simulation study and an application to the 1000 Genomes Project.

Published in:

Bioinformatics, 2016, v. 32, n. 9, p. 1366, doi. 10.1093/bioinformatics/btv752

By:

Prokopenko, Dmitry;
Hecker, Julian;
Silverman, Edwin K.;
Pagano, Marcello;
Nöthen, Markus M.;
Dina, Christian;
Lange, Christoph;
Fier, Heide Loehlein

Publication type:

Article

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS.

Published in:

Bioinformatics, 2016, v. 32, n. 5, p. 767, doi. 10.1093/bioinformatics/btv661

By:

Hoff, Katharina J.;
Lange, Simone;
Lomsadze, Alexandre;
Borodovsky, Mark;
Stanke, Mario

Publication type:

Article

iEnhancer-2L: a two-layer predictor for identifying enhancers and their strength by pseudo k-tuple nucleotide composition.

Published in:

Bioinformatics, 2016, v. 32, n. 3, p. 362, doi. 10.1093/bioinformatics/btv604

By:

Bin Liu;
Longyun Fang;
Ren Long;
Xun Lan;
Kuo-Chen Chou

Publication type:

Article

antaRNA: ant colony-based RNA sequence design.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3114, doi. 10.1093/bioinformatics/btv319

By:

Kleinkauf, Robert;
Mann, Martin;
Backofen, Rolf

Publication type:

Article

Improved rat genome gene prediction by integration of ESTs with RNA-Seq information.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 25, doi. 10.1093/bioinformatics/btu608

By:

Li, Liping;
Chen, Enguo;
Yang, Chun;
Zhu, Jun;
Jayaraman, Pushkala;
De Pons, Jeffrey;
Kaczorowski, Catherine C.;
Jacob, Howard J.;
Greene, Andrew S.;
Hodges, Matthew R.;
Cowley, Allen W.;
Liang, Mingyu;
Xu, Haiming;
Liu, Pengyuan;
Lu, Yan

Publication type:

Article

subSeq: Determining Appropriate Sequencing Depth Through Efficient Read Subsampling.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3424, doi. 10.1093/bioinformatics/btu552

By:

Robinson, David G.;
Storey, John D.

Publication type:

Article

RVboost: RNA-seq variants prioritization using a boosting method.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3414, doi. 10.1093/bioinformatics/btu577

By:

Wang, Chen;
Davila, Jaime I.;
Baheti, Saurabh;
Bhagwate, Aditya V.;
Wang, Xue;
Kocher, Jean-Pierre A.;
Slager, Susan L.;
Feldman, Andrew L.;
Novak, Anne J.;
Cerhan, James R.;
Thompson, E. Aubrey;
Asmann, Yan W.

Publication type:

Article

Phylogenetics, likelihood, evolution and complexity.

Published in:

Bioinformatics, 2012, v. 28, n. 22, p. 2989, doi. 10.1093/bioinformatics/bts555

By:

de Koning, A.P. Jason;
Gu, Wanjun;
Castoe, Todd A.;
Pollock, David D.

Publication type:

Article

BamTools: a C++ API and toolkit for analyzing and managing BAM files.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1691, doi. 10.1093/bioinformatics/btr174

By:

Barnett, Derek W.;
Garrison, Erik K.;
Quinlan, Aaron R.;
Strömberg, Michael P.;
Marth, Gabor T.

Publication type:

Article

Parallelization of the MAFFT multiple sequence alignment program.

Published in:

Bioinformatics, 2010, v. 26, n. 15, p. 1899, doi. 10.1093/bioinformatics/btq224

By:

Katoh, Kazutaka;
Toh, Hiroyuki

Publication type:

Article

Localized motif discovery in gene regulatory sequences.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1152, doi. 10.1093/bioinformatics/btq106

By:

Narang, Vipin;
Mittal, Ankush;
Sung, Wing-Kin;
Valencia, Alfonso

Publication type:

Article

Multiple testing in genome-wide association studies via hidden Markov models.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2802, doi. 10.1093/bioinformatics/btp476

By:

Zhi Wei;
Wenguang Sun;
Kai Wang;
Hakonarson, Hakon

Publication type:

Article

DiProGB: the dinucleotide properties genome browser.

Published in:

Bioinformatics, 2009, v. 25, n. 19, p. 2603, doi. 10.1093/bioinformatics/btp436

By:

Friedel, Maik;
Nikolajewa, Swetlana;
Sühnel, Jürgen;
Wilhelm, Thomas

Publication type:

Article

SOAP2: an improved ultrafast tool for short read alignment.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1966

By:

Ruiqiang Li;
Chang Yu;
Yingrui Li;
Tak-Wah Lam;
Siu-Ming Yiu;
Karsten Kristiansen;
Jun Wang

Publication type:

Article

PatMaN: rapid alignment of short sequences to large databases.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. 1530, doi. 10.1093/bioinformatics/btn223

By:

Kay Prüfer;
Udo Stenzel;
Michael Dannemann;
Richard E. Green;
Michael Lachmann;
Janet Kelso

Publication type:

Article

A profile-based deterministic sequential Monte Carlo algorithm for motif discovery.

Published in:

Bioinformatics, 2008, v. 24, n. 1, p. 46, doi. 10.1093/bioinformatics/btm543

By:

Kuo-Ching Liang;
Xiaodong Wang;
Dimitris Anastassiou

Publication type:

Article

Recombination-filtered genomic datasets by information maximization.

Published in:

Bioinformatics, 2007, v. 23, n. 14, p. 1851, doi. 10.1093/bioinformatics/btm253

By:

August E. Woerner;
Murray P. Cox;
Michael F. Hammer

Publication type:

Article

PEAKS: identification of regulatory motifs by their position in DNA sequences.

Published in:

Bioinformatics, 2007, v. 23, n. 2, p. 243, doi. 10.1093/bioinformatics/btl568

By:

Nicolás Bellora;
Domènec Farré;
M. Mar Albà

Publication type:

Article

Repseek, a tool to retrieve approximate repeats from large DNA sequences.

Published in:

Bioinformatics, 2007, v. 23, n. 1, p. 119, doi. 10.1093/bioinformatics/btl519

By:

Guillaume Achaz;
Eduardo P. C. Rocha;
Alain Viari;
Eric Coissac

Publication type:

Article