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Hidden genomic evolution in a morphospecies—The landscape of rapidly evolving genes in Tetrahymena.
Published in:
PLoS Biology, 2019, v. 17, n. 6, p. 1, doi. 10.1371/journal.pbio.3000294
By:
- Xiong, Jie;
- Yang, Wentao;
- Chen, Kai;
- Jiang, Chuanqi;
- Ma, Yang;
- Chai, Xiaocui;
- Yan, Guanxiong;
- Wang, Guangying;
- Yuan, Dongxia;
- Liu, Yifan;
- Bidwell, Shelby L.;
- Zafar, Nikhat;
- Hadjithomas, Michalis;
- Krishnakumar, Vivek;
- Coyne, Robert S.;
- Orias, Eduardo;
- Miao, Wei
Publication type:
Article
Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome.
Published in:
eLife, 2016, p. 1, doi. 10.7554/eLife.19090
By:
- Hamilton, Eileen P.;
- Kapusta, Aurélie;
- Huvos, Piroska E.;
- Bidwell, Shelby L.;
- Zafar, Nikhat;
- Tang, Haibao;
- Hadjithomas, Michalis;
- Krishnakumar, Vivek;
- Badger, Jonathan H.;
- Caler, Elisabet V.;
- Russ, Carsten;
- Qiandong Zeng;
- Lin Fan;
- Levin, Joshua Z.;
- Shea, Terrance;
- Young, Sarah K.;
- Hegarty, Ryan;
- Daza, Riza;
- Gujja, Sharvari;
- Wortman, Jennifer R.
Publication type:
Article
Corrigendum: Protein interaction data curation: the International Molecular Exchange (IMEx) consortium.
Published in:
Nature Methods, 2012, v. 9, n. 6, p. 626, doi. 10.1038/nmeth0612-626a
By:
- Orchard, Sandra;
- Kerrien, Samuel;
- Abbani, Sara;
- Aranda, Bruno;
- Bhate, Jignesh;
- Bidwell, Shelby;
- Bridge, Alan;
- Briganti, Leonardo;
- Brinkman, Fiona;
- Cesareni, Gianni;
- Chatr-aryamontri, Andrew;
- Chautard, Emilie;
- Chen, Carol;
- Dumousseau, Marine;
- Goll, Johannes;
- Hancock, Robert;
- Hannick, Linda I;
- Jurisica, Igor;
- Khadake, Jyoti;
- Lynn, David J
Publication type:
Article
Protein interaction data curation: the International Molecular Exchange (IMEx) consortium.
Published in:
Nature Methods, 2012, v. 9, n. 4, p. 345, doi. 10.1038/nmeth.1931
By:
- Orchard, Sandra;
- Kerrien, Samuel;
- Abbani, Sara;
- Aranda, Bruno;
- Bhate, Jignesh;
- Bidwell, Shelby;
- Bridge, Alan;
- Briganti, Leonardo;
- Brinkman, Fiona;
- Cesareni, Gianni;
- Chatr-aryamontri, Andrew;
- Chautard, Emilie;
- Chen, Carol;
- Dumousseau, Marine;
- Goll, Johannes;
- Hancock, Robert;
- Hannick, Linda I;
- Jurisica, Igor;
- Khadake, Jyoti;
- Lynn, David J
Publication type:
Article
Comparative genomics of the neglected human malaria parasite Plasmodium vivax.
Published in:
Nature, 2008, v. 455, n. 7214, p. 757, doi. 10.1038/nature07327
By:
- Carlton, Jane M.;
- Adams, John H.;
- Silva, Joana C.;
- Bidwell, Shelby L.;
- Lorenzi, Hernan;
- Caler, Elisabet;
- Crabtree, Jonathan;
- Angiuoli, Samuel V.;
- Merino, Emilio F.;
- Amedeo, Paolo;
- Qin Cheng;
- Coulson, Richard M. R.;
- Crabb, Brendan S.;
- del Portillo, Hernando A.;
- Essien, Kobby;
- Feldblyum, Tamara V.;
- Fernandez-Becerra, Carmen;
- Gilson, Paul R.;
- Gueye, Amy H.;
- Xiang Guo
Publication type:
Article
Genome Sequence of Babesia bovis and Comparative Analysis of Apicomplexan Hemoprotozoa.
Published in:
PLoS Pathogens, 2007, v. 3, n. 10, p. e148, doi. 10.1371/journal.ppat.0030148
By:
- Brayton, Kelly A.;
- Lau, Audrey O. T.;
- Herndon, David R.;
- Hannick, Linda;
- Kappmeyer, Lowell S.;
- Berens, Shawn J.;
- Bidwell, Shelby L.;
- Brown, Wendy C.;
- Crabtree, Jonathan;
- Fadrosh, Doug;
- Feldblum, Tamara;
- Forberger, Heather A.;
- Haas, Brian J;
- Howell, Jeanne M.;
- Khouri, Hoda;
- Hean Koo;
- Mann, David J.;
- Norimine, Junzo;
- Paulsen, Ian T.;
- Radune, Diana
Publication type:
Article
A Plasmodium Whole-Genome Synteny Map: Indels and Synteny Breakpoints as Foci for Species-Specific Genes.
Published in:
PLoS Pathogens, 2005, v. 1, n. 4, p. e44, doi. 10.1371/journal.ppat.0010044
By:
- Kooij, Taco W. A.;
- Carlton, Jane M.;
- Bidwell, Shelby L.;
- Hall, Neil;
- Ramesar, Jai;
- Janse, Chris J.;
- Waters, Andrew P.
Publication type:
Article
MTGD: The Medicago truncatula Genome Database.
Published in:
Plant & Cell Physiology, 2015, v. 56, n. 1, p. e1, doi. 10.1093/pcp/pcu179
By:
- Krishnakumar, Vivek;
- Kim, Maria;
- Rosen, Benjamin D.;
- Karamycheva, Svetlana;
- Bidwell, Shelby L.;
- Tang, Haibao;
- Town, Christopher D.
Publication type:
Article
Genomic insights into the Ixodes scapularis tick vector of Lyme disease.
Published in:
Nature Communications, 2016, v. 7, n. 2, p. 10507, doi. 10.1038/ncomms10507
By:
- Gulia-Nuss, Monika;
- Nuss, Andrew B.;
- Meyer, Jason M.;
- Sonenshine, Daniel E.;
- Roe, R. Michael;
- Waterhouse, Robert M.;
- Sattelle, David B.;
- de la Fuente, José;
- Ribeiro, Jose M.;
- Megy, Karine;
- Thimmapuram, Jyothi;
- Miller, Jason R.;
- Walenz, Brian P.;
- Koren, Sergey;
- Hostetler, Jessica B.;
- Thiagarajan, Mathangi;
- Joardar, Vinita S.;
- Hannick, Linda I.;
- Bidwell, Shelby;
- Hammond, Martin P.
Publication type:
Article
Rapid and sensitive detection of genome contamination at scale with FCS-GX.
Published in:
Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03198-7
By:
- Astashyn, Alexander;
- Tvedte, Eric S.;
- Sweeney, Deacon;
- Sapojnikov, Victor;
- Bouk, Nathan;
- Joukov, Victor;
- Mozes, Eyal;
- Strope, Pooja K.;
- Sylla, Pape M.;
- Wagner, Lukas;
- Bidwell, Shelby L.;
- Brown, Larissa C.;
- Clark, Karen;
- Davis, Emily W.;
- Smith-White, Brian;
- Hlavina, Wratko;
- Pruitt, Kim D.;
- Schneider, Valerie A.;
- Murphy, Terence D.
Publication type:
Article
Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea.
Published in:
Genome Biology, 2014, v. 15, n. 6, p. 1, doi. 10.1186/gb-2014-15-6-r77
By:
- Parkin, Isobel A. P.;
- Chushin Koh;
- Haibao Tang;
- Robinson, Stephen J.;
- Kagale, Sateesh;
- Clarke, Wayne E.;
- Town, Chris D.;
- Nixon, John;
- Krishnakumar, Vivek;
- Bidwell, Shelby L.;
- Denoeud, France;
- Belcram, Harry;
- Links, Matthew G.;
- Just, Jérémy;
- Clarke, Carling;
- Bender, Tricia;
- Huebert, Terry;
- Mason, Annaliese S.;
- Pires, Chris J.;
- Barker, Guy
Publication type:
Article
A Potentially Functional Mariner Transposable Element in the Protist Trichomonas vaginalis.
Published in:
Molecular Biology & Evolution, 2005, v. 22, n. 1, p. 126
By:
- Silva, Joana C.;
- Bastida, Felix;
- Bidwell, Shelby L.;
- Johnson, Patricia J.;
- Carlton, Jane M.
Publication type:
Article
An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
Published in:
BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-312
By:
- Haibao Tang;
- Krishnakumar, Vivek;
- Bidwell, Shelby;
- Rosen, Benjamin;
- Chan, Agnes;
- Shiguo Zhou;
- Gentzbittel, Laurent;
- Childs, Kevin L.;
- Yandell, Mark;
- Gundlach, Heidrun;
- Mayer, Klaus F. X.;
- Schwartz, David C.;
- Town, Christopher D.
Publication type:
Article
Reassociation kinetics-based approach for partial genome sequencing of the cattle tick, Rhipicephalus (Boophilus) microplus.
Published in:
BMC Genomics, 2010, v. 11, p. 374, doi. 10.1186/1471-2164-11-374
By:
- Guerrero, Felix D.;
- Moolhuijzen, Paula;
- Peterson, Daniel G.;
- Bidwell, Shelby;
- Caler, Elisabet;
- Bellgard, Matthew;
- Nene, Vishvanath M.;
- Djikeng, Appolinaire
Publication type:
Article
Immune responses to Plasmodium vivax pre-erythrocytic stage antigens in naturally exposed Duffy-negative humans: a potential model for identification of liver-stage antigens.
Published in:
European Journal of Immunology, 2005, v. 35, n. 6, p. 1859, doi. 10.1002/eji.200425807
By:
- Wang, Ruobing;
- Arevalo-Herrera, Myriam;
- Gardner, Malcolm J.;
- Bonelo, Anilza;
- Carlton, Jane M.;
- Gomez, Andres;
- Vera, Omaira;
- Soto, Liliana;
- Vergara, Juana;
- Bidwell, Shelby L.;
- Domingo, Alexander;
- Fraser, Claire M.;
- Herrera, Socrates
Publication type:
Article
Correction: Immune responses to.
Published in:
European Journal of Immunology, 2005, v. 35, n. 6, p. 2006, doi. 10.1002/eji.255590571
By:
- Wang, Ruobing;
- Arevalo-Herrera, Myriam;
- Gardner, Malcolm J.;
- Bonelo, Anilza;
- Carlton, Jane M.;
- Gomez, Andres;
- Vera, Omaira;
- Soto, Liliana;
- Vergara, Juana;
- Bidwell, Shelby L.;
- Domingo, Alexander;
- Fraser, Claire M.;
- Herrera, Socrates
Publication type:
Article

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