Works matching AU Zhongming Zhao

Results: 339

Critical Genomic Networks and Vasoreactive Variants in Idiopathic Pulmonary Arterial Hypertension.

Published in:

2016

By:

Hemnes, Anna R.;
Min Zhao;
West, James;
Newman, John H.;
Rich, Stuart;
Archer, Stephen L.;
Robbins, Ivan M.;
Blackwell, Timothy S.;
Cogan, Joy;
Loyd, James E.;
Zhongming Zhao;
Gaskill, Christa;
Jetter, Christopher;
Kropski, Jonathan A.;
Majka, Susan M.;
Austin, Eric D.;
Zhao, Min;
Zhao, Zhongming

Publication type:

journal article

An informatics research agenda to support precision medicine: seven key areas.

Published in:

2016

By:

Tenenbaum, Jessica D.;
Avillach, Paul;
Benham-Hutchins, Marge;
Breitenstein, Matthew K.;
Crowgey, Erin L.;
Hoffman, Mark A.;
Xia Jiang;
Madhavan, Subha;
Mattison, John E.;
Nagarajan, Radhakrishnan;
Ray, Bisakha;
Shin, Dmitriy;
Visweswaran, Shyam;
Zhongming Zhao;
Freimuth, Robert R.;
Jiang, Xia;
Zhao, Zhongming

Publication type:

journal article

A network-based drug repositioning infrastructure for precision cancer medicine through targeting significantly mutated genes in the human cancer genomes.

Published in:

2016

By:

Feixiong Cheng;
Junfei Zhao;
Fooksa, Michaela;
Zhongming Zhao;
Cheng, Feixiong;
Zhao, Junfei;
Zhao, Zhongming

Publication type:

journal article

Introduction: the International Conference on Intelligent Biology and Medicine (ICIBM) 2016: special focus on medical informatics and big data.

Published in:

2017

By:

Cui Tao;
Yang Gong;
Hua Xu;
Zhongming Zhao;
Tao, Cui;
Gong, Yang;
Xu, Hua;
Zhao, Zhongming

Publication type:

Editorial

MicroRNA-31 initiates lung tumorigenesis and promotes mutant KRAS-driven lung cancer.

Published in:

2016

By:

Edmonds, Mick D.;
Boyd, Kelli L.;
Moyo, Tamara;
Mitra, Ramkrishna;
Duszynski, Robert;
Arrate, Maria Pia;
Xi Chen;
Zhongming Zhao;
Blackwell, Timothy S.;
Andl, Thomas;
Eischen, Christine M.;
Chen, Xi;
Zhao, Zhongming

Publication type:

journal article

SURE-based optimum-length S-G filter to reconstruct NDVI time series iteratively with outliers removal.

Published in:

International Journal of Wavelets, Multiresolution & Information Processing, 2020, v. 18, n. 2, p. N.PAG, doi. 10.1142/S0219691320500010

By:

Tang, Liang;
Zhao, Zhongming;
Tang, Ping;
Yang, Haijun

Publication type:

Article

Progression of prostate carcinoma is promoted by adipose stromal cell-secreted CXCL12 signaling in prostate epithelium.

Published in:

NPJ Precision Oncology, 2021, v. 5, n. 1, p. 1, doi. 10.1038/s41698-021-00160-9

By:

Su, Fei;
Daquinag, Alexes C.;
Ahn, Songyeon;
Saha, Achinto;
Dai, Yulin;
Zhao, Zhongming;
DiGiovanni, John;
Kolonin, Mikhail G.

Publication type:

Article

DeepVISP: Deep Learning for Virus Site Integration Prediction and Motif Discovery.

Published in:

Advanced Science, 2021, v. 8, n. 9, p. 1, doi. 10.1002/advs.202004958

By:

Xu, Haodong;
Jia, Peilin;
Zhao, Zhongming

Publication type:

Article

White matter deficits in cocaine use disorder: convergent evidence from in vivo diffusion tensor imaging and ex vivo proteomic analysis.

Published in:

Translational Psychiatry, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41398-021-01367-x

By:

Tondo, Lucca Pizzato;
Viola, Thiago Wendt;
Fries, Gabriel R.;
Kluwe-Schiavon, Bruno;
Rothmann, Leonardo Mello;
Cupertino, Renata;
Ferreira, Pedro;
Franco, Alexandre Rosa;
Lane, Scott D.;
Stertz, Laura;
Zhao, Zhongming;
Hu, Ruifeng;
Meyer, Thomas;
Schmitz, Joy M.;
Walss-Bass, Consuelo;
Grassi-Oliveira, Rodrigo

Publication type:

Article

Retraction Note: Identification of de novo mutations in prenatal neurodevelopment-associated genes in schizophrenia in two Han Chinese patient-sibling family-based cohorts.

Published in:

Translational Psychiatry, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41398-020-01116-6

By:

Jiang, Shan;
Zhou, Daizhan;
Wang, Yin-Ying;
Jia, Peilin;
Wan, Chunling;
Li, Xingwang;
He, Guang;
Cao, Dongmei;
Jiang, Xiaoqian;
Kendler, Kenneth S.;
Tsuang, Ming;
Mize, Travis;
Wu, Jain-Shing;
Lu, Yimei;
He, Lin;
Chen, Jingchun;
Zhao, Zhongming;
Chen, Xiangning

Publication type:

Article

Mechanical‐Enhanced and Durable Zwitterionic Hydrogel Coating for Inhibiting Coagulation and Reducing Bacterial Infection.

Published in:

Advanced Healthcare Materials, 2024, v. 13, n. 20, p. 1, doi. 10.1002/adhm.202400126

By:

Yan, Zhuojun;
Yao, Mengmeng;
Zhao, Zhongming;
Yang, Qi;
Liu, Rui;
Liu, Baijun;
Wang, Xueyu;
Chen, Liming;
Zhang, Hong;
Wei, Yuping;
Yao, Fanglian;
Li, Junjie

Publication type:

Article

Injectable Asymmetric Adhesive‐Antifouling Bifunctional Hydrogel for Peritoneal Adhesion Prevention.

Published in:

Advanced Healthcare Materials, 2024, v. 13, n. 10, p. 1, doi. 10.1002/adhm.202303574

By:

Zhao, Zhongming;
Sun, Hong;
Yu, Chaojie;
Liu, Baijun;
Liu, Rui;
Yang, Qi;
Guo, Bingyan;
Li, Xiuqiang;
Yao, Mengmeng;
Yao, Fanglian;
Zhang, Hong;
Li, Junjie

Publication type:

Article

ERGR: An ethanol-related gene resource.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D840, doi. 10.1093/nar/gkn816

By:

Guo, An-Yuan;
Webb, Bradley T.;
Miles, Michael F.;
Zimmerman, Mark P.;
Kendler, Kenneth S.;
Zhao, Zhongming

Publication type:

Article

Single-cell multiomics decodes regulatory programs for mouse secondary palate development.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-45199-x

By:

Yan, Fangfang;
Suzuki, Akiko;
Iwaya, Chihiro;
Pei, Guangsheng;
Chen, Xian;
Yoshioka, Hiroki;
Yu, Meifang;
Simon, Lukas M.;
Iwata, Junichi;
Zhao, Zhongming

Publication type:

Article

Chronological adhesive cardiac patch for synchronous mechanophysiological monitoring and electrocoupling therapy.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42008-9

By:

Yu, Chaojie;
Shi, Mingyue;
He, Shaoshuai;
Yao, Mengmeng;
Sun, Hong;
Yue, Zhiwei;
Qiu, Yuwei;
Liu, Baijun;
Liang, Lei;
Zhao, Zhongming;
Yao, Fanglian;
Zhang, Hong;
Li, Junjie

Publication type:

Article

Whole-Genome Sequencing Analysis of Human Metabolome in Multi-Ethnic Populations.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38800-2

By:

Feofanova, Elena V.;
Brown, Michael R.;
Alkis, Taryn;
Manuel, Astrid M.;
Li, Xihao;
Tahir, Usman A.;
Li, Zilin;
Mendez, Kevin M.;
Kelly, Rachel S.;
Qi, Qibin;
Chen, Han;
Larson, Martin G.;
Lemaitre, Rozenn N.;
Morrison, Alanna C.;
Grieser, Charles;
Wong, Kari E.;
Gersztern, Robert E.;
Zhao, Zhongming;
Lasky-Su, Jessica;
Lin, Honghuang

Publication type:

Article

Novel Computational and Artificial Intelligence Models in Cancer Research.

Published in:

2025

By:

Liu, Li;
Li, Fuhai;
Liu, Xiaoming;
Wang, Kai;
Zhao, Zhongming

Publication type:

Editorial

Cell-Type-Specific Profibrotic Scores across Multi-Organ Systems Predict Cancer Prognosis.

Published in:

Cancers, 2021, v. 13, n. 23, p. 6024, doi. 10.3390/cancers13236024

By:

Fan, Huihui;
Jia, Peilin;
Zhao, Zhongming

Publication type:

Article

Erratum: Rodriguez et al. Substance P Antagonism as a Novel Therapeutic Option to Enhance Efficacy of Cisplatin in Triple Negative Breast Cancer and Protect PC12 Cells against Cisplatin-Induced Oxidative Stress and Apoptosis. Cancers 2021, 13, 3871.

Published in:

2021

By:

Rodriguez, Emma;
Pei, Guangsheng;
Zhao, Zhongming;
Kim, Sang T.;
German, Alexis;
Robinson, Prema

Publication type:

Correction Notice

Temozolomide-Induced RNA Interactome Uncovers Novel LncRNA Regulatory Loops in Glioblastoma.

Published in:

Cancers, 2020, v. 12, n. 9, p. 2583, doi. 10.3390/cancers12092583

By:

Fritah, Sabrina;
Muller, Arnaud;
Jiang, Wei;
Mitra, Ramkrishna;
Sarmini, Mohamad;
Dieterle, Monika;
Golebiewska, Anna;
Ye, Tao;
Van Dyck, Eric;
Herold-Mende, Christel;
Zhao, Zhongming;
Azuaje, Francisco;
Niclou, Simone P.

Publication type:

Article

MSEA: detection and quantification of mutation hotspots through mutation set enrichment analysis.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 1, doi. 10.1186/s13059-014-0489-9

By:

Peilin Jia;
Quan Wang;
Qingxia Chen;
Hutchinson, Katherine E.;
William Pao;
Zhongming Zhao

Publication type:

Article

Chronic kidney disease prediction using boosting techniques based on clinical parameters.

Published in:

PLoS ONE, 2023, v. 18, n. 12, p. 1, doi. 10.1371/journal.pone.0295234

By:

Ganie, Shahid Mohammad;
Dutta Pramanik, Pijush Kanti;
Mallik, Saurav;
Zhao, Zhongming

Publication type:

Article

Federated learning based futuristic biomedical big-data analysis and standardization.

Published in:

PLoS ONE, 2023, v. 18, n. 10, p. 1, doi. 10.1371/journal.pone.0291631

By:

Fathima, Afifa Salsabil;
Basha, Syed Muzamil;
Ahmed, Syed Thouheed;
Mathivanan, Sandeep Kumar;
Rajendran, Sukumar;
Mallik, Saurav;
Zhao, Zhongming

Publication type:

Article

Integrated analysis of racial disparities in genomic architecture identifies a trans‐ancestry prognostic subtype in bladder cancer.

Published in:

Molecular Oncology, 2023, v. 17, n. 4, p. 564, doi. 10.1002/1878-0261.13360

By:

Zhang, Baifeng;
Jia, Peilin;
Wang, Jiayin;
Pei, Guangsheng;
Wang, Changxi;
Pei, Shimei;
Li, Xiangchun;
Zhao, Zhongming;
Yi, Xin;
Guan, Xin‐yuan;
Huang, Yi

Publication type:

Article

Distinct Murine Pancreatic Transcriptomic Signatures during Chronic Pancreatitis Recovery.

Published in:

Mediators of Inflammation, 2021, p. 1, doi. 10.1155/2021/5595464

By:

Zhang, Yinjie;
Yang, Baibing;
Davis, Joy M.;
Drake, Madeline M.;
Younes, Mamoun;
Shen, Qiang;
Zhao, Zhongming;
Cao, Yanna;
Ko, Tien C.

Publication type:

Article

Distinct Murine Pancreatic Transcriptomic Signatures during Chronic Pancreatitis Recovery.

Published in:

Mediators of Inflammation, 2021, p. 1, doi. 10.1155/2021/5595464

By:

Zhang, Yinjie;
Yang, Baibing;
Davis, Joy M.;
Drake, Madeline M.;
Younes, Mamoun;
Shen, Qiang;
Zhao, Zhongming;
Cao, Yanna;
Ko, Tien C.

Publication type:

Article

Functional Analysis of Single Nucleotide Polymorphisms Associated with Type 2 Diabetes.

Published in:

Journal of Health Disparities Research & Practice, 2019, v. 12, n. 4, p. 73

By:

Rolovic, Serdjan;
Zhongming Zhao;
Junfei Zhao

Publication type:

Article

Anemia and Red Blood Cell Indices Predict HIV-Associated Neurocognitive Impairment in the Highly Active Antiretroviral Therapy Era.

Published in:

2016

By:

Kallianpur, Asha R.;
Quan Wang;
Peilin Jia;
Hulgan, Todd;
Zhongming Zhao;
Letendre, Scott L.;
Ellis, Ronald J.;
Heaton, Robert K.;
Franklin, Donald R.;
Barnholtz-Sloan, Jill;
Collier, Ann C.;
Marra, Christina M.;
Clifford, David B.;
Gelman, Benjamin B.;
McArthur, Justin C.;
Morgello, Susan;
Simpson, David M.;
McCutchan, J. A.;
Grant, Igor;
Wang, Quan

Publication type:

journal article

The challenges and opportunities of scRNA-seq in COVID-19 research and clinical translation.

Published in:

Virology Journal, 2022, v. 19, n. 1, p. 1, doi. 10.1186/s12985-022-01923-x

By:

Liu, Wendao;
Ye, Xiaohua;
An, Zhiqiang;
Zhao, Zhongming

Publication type:

Article

Construction of a chloroplast protein interaction network and functional mining of photosynthetic proteins in Arabidopsis thaliana.

Published in:

Cell Research, 2008, v. 18, n. 10, p. 1007, doi. 10.1038/cr.2008.286

By:

Qing-Bo Yu;
Guang Li;
Guan Wang;
Jing-Chun Sun;
Peng-Cheng Wang;
Chen Wang;
Hua-Ling Mi;
Wei-Min Ma;
Jian Cui;
Yong-Lan Cui;
Kang Chong;
Yi-Xue Li;
Yu-Hua Li;
Zhongming Zhao;
Tie-Liu Shi;
Zhong-Nan Yang

Publication type:

Article

An improved method for diagnosis of Parkinson's disease using deep learning models enhanced with metaheuristic algorithm.

Published in:

BMC Medical Imaging, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12880-024-01335-z

By:

Majhi, Babita;
Kashyap, Aarti;
Mohanty, Siddhartha Suprasad;
Dash, Sujata;
Mallik, Saurav;
Li, Aimin;
Zhao, Zhongming

Publication type:

Article

Correction: VER-Net: a hybrid transfer learning model for lung cancer detection using CT scan images.

Published in:

2024

By:

Saha, Anindita;
Ganie, Shahid Mohammad;
Dutta Pramanik, Pijush Kanti;
Yadav, Rakesh Kumar;
Mallik, Saurav;
Zhao, Zhongming

Publication type:

Correction Notice

VER-Net: a hybrid transfer learning model for lung cancer detection using CT scan images.

Published in:

BMC Medical Imaging, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12880-024-01238-z

By:

Saha, Anindita;
Ganie, Shahid Mohammad;
Pramanik, Pijush Kanti Dutta;
Yadav, Rakesh Kumar;
Mallik, Saurav;
Zhao, Zhongming

Publication type:

Article

Prioritization of risk genes in multiple sclerosis by a refined Bayesian framework followed by tissue-specificity and cell type feature assessment.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08580-y

By:

Liu, Andi;
Manuel, Astrid M.;
Dai, Yulin;
Zhao, Zhongming

Publication type:

Article

Correction to: The International Conference on Intelligent Biology and Medicine (ICIBM) 2019: bioinformatics methods and applications for human diseases.

Published in:

2020

By:

Zhao, Zhongming;
Dai, Yulin;
Zhang, Chi;
Mathé, Ewy;
Wei, Lai;
Wang, Kai

Publication type:

Correction Notice

The International Conference on Intelligent Biology and Medicine (ICIBM) 2019: bioinformatics methods and applications for human diseases.

Published in:

2019

By:

Zhao, Zhongming;
Dai, Yulin;
Zhang, Chi;
Mathé, Ewy;
Wei, Lai;
Wang, Kai

Publication type:

Editorial

Targeted activation of CREB in reactive astrocytes is neuroprotective in focal acute cortical injury.

Published in:

Glia (0894-1491), 2016, v. 64, n. 5, p. 853, doi. 10.1002/glia.22969

By:

Pardo, Luis;
Schlüter, Agatha;
Valor, Luis M.;
Barco, Angel;
Giralt, Mercedes;
Golbano, Arantxa;
Hidalgo, Juan;
Jia, Peilin;
Zhao, Zhongming;
Jové, Mariona;
Portero‐Otin, Manuel;
Ruiz, Montserrat;
Giménez‐Llort, Lydia;
Masgrau, Roser;
Pujol, Aurora;
Galea, Elena

Publication type:

Article

Features of Methylation and Gene Expression in the Promoter-Associated CpG Islands Using Human Methylome Data.

Published in:

Comparative & Functional Genomics, 2012, p. 1, doi. 10.1155/2012/598987

By:

Xin Du;
Han, Leng;
Guo, An-Yuan;
Zhao, Zhongming

Publication type:

Article

Comparative Analysis of CpG Islands in Four Fish Genomes.

Published in:

Comparative & Functional Genomics, 2008, p. 1, doi. 10.1155/2008/565631

By:

Leng Han;
Zhongming Zhao

Publication type:

Article

Gene expression in mice with endothelium-specific telomerase knockout.

Published in:

Frontiers in Cell & Developmental Biology, 2023, p. 1, doi. 10.3389/fcell.2023.1295072

By:

Zhanguo Gao;
Yongmei Yu;
Yulin Dai;
Zhongming Zhao;
Eckel-Mahan, Kristin;
Kolonin, Mikhail G.

Publication type:

Article

An Integrative Transcriptomic and Methylation Approach for Identifying Differentially Expressed Circular RNAs Associated with DNA Methylation Change.

Published in:

Biomedicines, 2021, v. 9, n. 6, p. 657, doi. 10.3390/biomedicines9060657

By:

Xu, Tianyi;
Wang, LiPing;
Jia, Peilin;
Song, Xiaofeng;
Zhao, Zhongming

Publication type:

Article

Systematic dissection of dysregulated transcription factor-miRNA feed-forward loops across tumor types.

Published in:

Briefings in Bioinformatics, 2016, v. 17, n. 6, p. 996, doi. 10.1093/bib/bbv107

By:

Wei Jiang;
Mitra, Ramkrishna;
Chen-Ching Lin;
Quan Wang;
Feixiong Cheng;
Zhongming Zhao

Publication type:

Article

Advances in computational approaches for prioritizing driver mutations and significantly mutated genes in cancer genomes.

Published in:

Briefings in Bioinformatics, 2016, v. 17, n. 4, p. 642, doi. 10.1093/bib/bbv068

By:

Feixiong Cheng;
Junfei Zhao;
Zhongming Zhao

Publication type:

Article

Application of next generation sequencing to human gene fusion detection: computational tools, features and perspectives.

Published in:

Briefings in Bioinformatics, 2013, v. 14, n. 4, p. 506, doi. 10.1093/bib/bbs044

By:

Wang, Qingguo;
Xia, Junfeng;
Jia, Peilin;
Pao, William;
Zhao, Zhongming

Publication type:

Article

MicroRNA-138 suppresses glioblastoma proliferation through downregulation of CD44.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-88615-8

By:

Yeh, Margaret;
Wang, Yin-Ying;
Yoo, Ji Young;
Oh, Christina;
Otani, Yoshihiro;
Kang, Jin Muk;
Park, Eun S.;
Kim, Eunhee;
Chung, Sangwoon;
Jeon, Young-Jun;
Calin, George A.;
Kaur, Balveen;
Zhao, Zhongming;
Lee, Tae Jin

Publication type:

Article

Computational learning of features for automated colonic polyp classification.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-83788-8

By:

Bora, Kangkana;
Bhuyan, M. K.;
Kasugai, Kunio;
Mallik, Saurav;
Zhao, Zhongming

Publication type:

Article

Detecting methylation signatures in neurodegenerative disease by density-based clustering of applications with reducing noise.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-78463-3

By:

Mallik, Saurav;
Zhao, Zhongming

Publication type:

Article

A Convergent Study of Genetic Variants Associated With Crohn's Disease: Evidence From GWAS, Gene Expression, Methylation, eQTL and TWAS.

Published in:

Frontiers in Genetics, 2019, p. N.PAG, doi. 10.3389/fgene.2019.00318

By:

Dai, Yulin;
Pei, Guangsheng;
Zhao, Zhongming;
Jia, Peilin

Publication type:

Article

Targeting IGF2 to reprogram the tumor microenvironment for enhanced viro-immunotherapy.

Published in:

Neuro-Oncology, 2024, v. 26, n. 9, p. 1602, doi. 10.1093/neuonc/noae105

By:

Noh, Min Hye;
Kang, Jin Muk;
Miller, Alexandra A;
Nguyen, Grace;
Huang, Minxin;
Shim, Ji Seon;
Bueso-Perez, Alberto J;
Murphy, Sara A;
Rivera-Caraballo, Kimberly A;
Otani, Yoshihiro;
Kim, Eunju;
Yoo, Seung-Hee;
Yan, Yuanqing;
Banasavadi-Siddegowda, Yeshavanth;
Nakashima, Hiroshi;
Chiocca, E Antonio;
Kaur, Balveen;
Zhao, Zhongming;
Lee, Tae Jin;
Yoo, Ji Young

Publication type:

Article

Decoding critical long non-coding RNA in ovarian cancer epithelial-to-mesenchymal transition.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01781-0

By:

Mitra, Ramkrishna;
Xi Chen;
Greenawalt, Evan J.;
Maulik, Ujjwal;
Wei Jiang;
Zhongming Zhao;
Eischen, Christine M.

Publication type:

Article