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A time-calibrated phylogeny of the diversification of Holoadeninae frogs.
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- Frontiers in Bioinformatics, 2024, p. 1, doi. 10.3389/fbinf.2024.1441373
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- Article
Predicting novel mosquito-associated viruses from metatranscriptomic dark matter.
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- NAR Genomics & Bioinformatics, 2024, v. 6, n. 3, p. 1, doi. 10.1093/nargab/lqae077
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- Article
Modeling Substitution Rate Evolution across Lineages and Relaxing the Molecular Clock.
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- Genome Biology & Evolution, 2024, v. 16, n. 9, p. 1, doi. 10.1093/gbe/evae199
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- Article
Positive Selection on HIV Accessory Proteins and the Analysis of Molecular Adaptation After Interspecies Transmission.
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- Journal of Molecular Evolution, 2008, v. 66, n. 6, p. 598, doi. 10.1007/s00239-008-9112-6
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- Article
Appropriate Assignment of Fossil Calibration Information Minimizes the Difference between Phylogenetic and Pedigree Mutation Rates in Humans.
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- Life (2075-1729), 2018, v. 8, n. 4, p. 49, doi. 10.3390/life8040049
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- Article
Long-Read Single Molecule Sequencing to Resolve Tandem Gene Copies: The Mst77Y Region on the Drosophila melanogaster Y Chromosome.
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- G3: Genes | Genomes | Genetics, 2015, v. 5, n. 6, p. 1145, doi. 10.1534/g3.115.017277
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- Article
Newly Discovered Occurrences and Gene Tree of the Extracellular Globins and Linker Chains from the Giant Hexagonal Bilayer Hemoglobin in Metazoans.
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- Genome Biology & Evolution, 2019, v. 11, n. 3, p. 597, doi. 10.1093/gbe/evz012
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- Article
Broad Phylogenetic Occurrence of the Oxygen-Binding Hemerythrins in Bilaterians.
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- Genome Biology & Evolution, 2017, v. 9, n. 10, p. 2580, doi. 10.1093/gbe/evx181
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- Article
Multispecies Coalescent Analysis of the Early Diversification of Neotropical Primates: Phylogenetic Inference under Strong Gene Trees/Species Tree Conflict.
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- Genome Biology & Evolution, 2014, v. 6, n. 11, p. 3105, doi. 10.1093/gbe/evu244
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- Article
Functional Copies of the Mst77F Gene on the Y Chromosome of Drosophila melanogaster.
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- Genetics, 2010, v. 184, n. 1, p. 295, doi. 10.1534/genetics.109.107516
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- Article
The Estimated Pacemaker for Great Apes Supports the Hominoid Slowdown Hypothesis.
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- Evolutionary Bioinformatics, 2019, v. 15, p. N.PAG, doi. 10.1177/1176934319855988
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- Article
The Estimated Pacemaker for Great Apes Supports the Hominoid Slowdown Hypothesis.
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- Evolutionary Bioinformatics, 2019, v. 15, p. N.PAG, doi. 10.1177/1176934319855988
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- Article
The Estimated Pacemaker for Great Apes Supports the Hominoid Slowdown Hypothesis.
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- Evolutionary Bioinformatics, 2019, p. 1, doi. 10.1177/1176934319855988
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- Article
Performance of Hidden Markov Models in Recovering the Standard Classification of Glycoside Hydrolases.
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- Evolutionary Bioinformatics, 2017, n. 13, p. 1, doi. 10.1177/1176934317703401
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- Article
Impact of the Partitioning Scheme on Divergence Times Inferred from Mammalian Genomic Data Sets.
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- Evolutionary Bioinformatics, 2012, n. 8, p. 207, doi. 10.4137/EBO.S9627
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- Article
Testing Synchrony in Historical Biogeography: The Case of New World Primates and Hystricognathi Rodents.
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- Evolutionary Bioinformatics, 2012, n. 8, p. 127, doi. 10.4137/EBO.S9008
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- Article
Phylogenetic analysis of the ATP-binding cassette proteins suggests a new ABC protein subfamily J in Aedes aegypti (Diptera: Culicidae).
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- BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-06873-8
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- Article
Sigmodontine rodents diversified in South America prior to the complete rise of the Panamanian Isthmus.
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- Journal of Zoological Systematics & Evolutionary Research, 2014, v. 52, n. 3, p. 249, doi. 10.1111/jzs.12057
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- Article
Large ancestral effective population size explains the difficult phylogenetic placement of owl monkeys.
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- American Journal of Primatology, 2019, v. 81, n. 3, p. N.PAG, doi. 10.1002/ajp.22955
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MamMiBase: a mitochondrial genome database for mammalian phylogenetic studies.
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- Bioinformatics, 2005, v. 21, n. 10, p. 2566
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Incorrect handling of calibration information in divergence time inference: an example from volcanic islands.
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- Ecology & Evolution (20457758), 2012, v. 2, n. 3, p. 493, doi. 10.1002/ece3.94
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- Article
Geological Changes of the Americas and their Influence on the Diversification of the Neotropical Kissing Bugs (Hemiptera: Reduviidae: Triatominae).
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- PLoS Neglected Tropical Diseases, 2016, v. 10, n. 4, p. 1, doi. 10.1371/journal.pntd.0004527
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- Article
Chronology of Deep Nodes in the Neotropical Primate Phylogeny: Insights from Mitochondrial Genomes.
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- PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0051699
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- Article
Phylogenetic Status and Timescale for the Diversification of Steno and Sotalia Dolphins.
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- PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0028297
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Evolution of the B3 DNA Binding Superfamily: New Insights into REM Family Gene Diversification.
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- PLoS ONE, 2009, v. 4, n. 6, p. 1, doi. 10.1371/journal.pone.0005791
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- Article
Analysis of Adaptive Evolution in Lyssavirus Genomes Reveals Pervasive Diversifying Selection during Species Diversification.
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- Viruses (1999-4915), 2014, v. 6, n. 11, p. 4465, doi. 10.3390/v6114465
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- Article
Molecular systematics reveals the origins of subsociality in tortoise beetles (Coleoptera, Chrysomelidae, Cassidinae).
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- Systematic Entomology, 2020, v. 45, n. 4, p. 894, doi. 10.1111/syen.12434
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- Article
The Effective Population Sizes of the Anthropoid Ancestors of the Human–Chimpanzee Lineage Provide Insights on the Historical Biogeography of the Great Apes.
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- Molecular Biology & Evolution, 2014, v. 31, n. 1, p. 37, doi. 10.1093/molbev/mst191
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Timing the Origin of New World Monkeys.
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- Molecular Biology & Evolution, 2003, v. 20, n. 10, p. 1620, doi. 10.1093/molbev/msg172
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- Article
Fast speciations and slow genes: uncovering the root of living canids.
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- Biological Journal of the Linnean Society, 2020, v. 129, n. 2, p. 492, doi. 10.1093/biolinnean/blz181
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Comparative evaluation of macroevolutionary regimes of Ruminantia and selected mammalian lineages.
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- Biological Journal of the Linnean Society, 2018, v. 123, n. 4, p. 814, doi. 10.1093/biolinnean/bly009
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- Article
Employing statistical learning to derive species‐level genetic diversity for mammalian species.
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- Mammal Review, 2020, v. 50, n. 3, p. 240, doi. 10.1111/mam.12192
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- Article
The Influence of Taxon Sampling and Tree Shape on Molecular Dating: An Empirical Example from Mammalian Mitochondrial Genomes.
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- Bioinformatics & Biology Insights, 2012, n. 6, p. 129, doi. 10.4137/BBI.S9677
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- Article
Redescription and Phylogenetic Position of Condylostoma arenarium Spiegel, 1926 (Ciliophora, Heterotrichea) from Guanabara Bay, Brazil.
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- Journal of Eukaryotic Microbiology, 2015, v. 62, n. 6, p. 722, doi. 10.1111/jeu.12228
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Morphology and Phylogenetic Position of an Unusual Stentor polymorphus (Ciliophora: Heterotrichea) Without Symbiotic Algae.
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- Journal of Eukaryotic Microbiology, 2014, v. 61, n. 3, p. 305, doi. 10.1111/jeu.12108
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Phylogenetic nomenclature and evolution of mannose-binding lectin (MBL2) haplotypes.
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- BMC Genetics, 2010, v. 11, p. 38, doi. 10.1186/1471-2156-11-38
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The range of sampling times affects Zika virus evolutionary rates and divergence times.
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- Archives of Virology, 2019, v. 164, n. 12, p. 3027, doi. 10.1007/s00705-019-04430-7
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- Article
Discovery and evolution of novel hemerythrin genes in annelid worms.
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- BMC Evolutionary Biology, 2017, v. 17, p. 1, doi. 10.1186/s12862-017-0933-z
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- Article
Data partitioning and correction for ascertainment bias reduce the uncertainty of placental mammal divergence times inferred from the morphological clock.
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- Ecology & Evolution (20457758), 2019, v. 9, n. 4, p. 2255, doi. 10.1002/ece3.4921
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Incomplete lineage sorting impacts the inference of macroevolutionary regimes from molecular phylogenies when concatenation is employed: An analysis based on Cetacea.
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- Ecology & Evolution (20457758), 2018, v. 8, n. 14, p. 6965, doi. 10.1002/ece3.4212
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- Article
Multispecies coalescent analysis confirms standing phylogenetic instability in Hexapoda.
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- Journal of Evolutionary Biology, 2018, v. 31, n. 11, p. 1623, doi. 10.1111/jeb.13355
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Comparative evaluation of maximum parsimony and Bayesian phylogenetic reconstruction using empirical morphological data.
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- Journal of Evolutionary Biology, 2018, v. 31, n. 10, p. 1477, doi. 10.1111/jeb.13344
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Phylogeny and chronology of the major lineages of New World hystricognath rodents: insights on the biogeography of the Eocene/Oligocene arrival of mammals in South America.
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- BMC Research Notes, 2013, v. 6, n. 1, p. 1, doi. 10.1186/1756-0500-6-160
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Diversification of the Genus Anopheles and a Neotropical Clade from the Late Cretaceous.
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- PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0134462
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- Article