Works matching AU Walker, Logan

Results: 46

Phosphohistone H3 outperforms Ki67 as a marker of outcome for breast cancer patients.

Published in:

Histopathology, 2015, v. 67, n. 4, p. 538, doi. 10.1111/his.12678

By:

Gerring, Zac;
Pearson, John F;
Morrin, Helen R;
Robinson, Bridget A;
Harris, Gavin C;
Walker, Logan C

Publication type:

Article

Genome-Wide Gene Expression Analyses of BRCA1 - and BRCA2 -Associated Breast and Ovarian Tumours.

Published in:

Cancers, 2020, v. 12, n. 10, p. 3015, doi. 10.3390/cancers12103015

By:

Wiggins, George A. R.;
Walker, Logan C.;
Pearson, John F.

Publication type:

Article

Variable expression quantitative trait loci analysis of breast cancer risk variants.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-86690-5

By:

Wiggins, George A. R.;
Black, Michael A.;
Dunbier, Anita;
Merriman, Tony R.;
Pearson, John F.;
Walker, Logan C.

Publication type:

Article

Comprehensive Assessment of BARD1 Messenger Ribonucleic Acid Splicing With Implications for Variant Classification.

Published in:

Frontiers in Genetics, 2019, v. 10, p. 1, doi. 10.3389/fgene.2019.01139

By:

Walker, Logan C.;
Lattimore, Vanessa Lilian;
Kvist, Anders;
Kleiblova, Petra;
Zemankova, Petra;
de Jong, Lucy;
Wiggins, George A. R.;
Hakkaart, Christopher;
Cree, Simone L.;
Behar, Raquel;
Houdayer, Claude;
Investigators, kConFab;
Parsons, Michael T.;
Kennedy, Martin A.;
Spurdle, Amanda B.;
de la Hoya, Miguel

Publication type:

Article

Addressing patient alcohol use: a view from general practice.

Published in:

2012

By:

Mules, Thomas;
Taylor, Jennifer;
Price, Rachel;
Walker, Logan;
Singh, Beneet;
Newsam, Patrick;
Palaniyappan, Thenmoli;
Snook, Toby;
Ruselan, Mahfuzah;
Ryan, John;
Santhirasegaran, Jaishree;
Shearman, Phoebe;
Watson, Petronella;
Zino, Richard;
Signal, Louse;
Fougere, Geoff;
Moriarty, Helen;
Jenkin, Gabrielle

Publication type:

Journal Article

Addressing patient alcohol use: a view from general practice.

Published in:

Journal of Primary Health Care, 2012, v. 4, n. 3, p. 217, doi. 10.1071/hc12217

By:

Mules, Thomas;
Taylor, Jennifer;
Price, Rachel;
Walker, Logan;
Singh, Baneet;
Newsam, Patrick;
Palaniyappan, Thenmoli;
Snook, Toby;
Ruselan, Mahfuzah;
Ryan, John;
Santhirasegaran, Jaishree;
Shearman, Phoebe;
Watson, Petronella;
Zino, Richard;
Signal, Louise;
Fougere, Geoff;
Moriarty, Helen;
Jenkin, Gabrielle

Publication type:

Article

Rare germline copy number deletions of likely functional importance are implicated in endometrial cancer predisposition.

Published in:

Human Genetics, 2015, v. 134, n. 3, p. 269, doi. 10.1007/s00439-014-1507-4

By:

Moir-Meyer, Gemma;
Pearson, John;
Lose, Felicity;
Scott, Rodney;
McEvoy, Mark;
Attia, John;
Holliday, Elizabeth;
Pharoah, Paul;
Dunning, Alison;
Thompson, Deborah;
Easton, Douglas;
Spurdle, Amanda;
Walker, Logan

Publication type:

Article

CLEAR: coverage-based limiting-cell experiment analysis for RNA-seq.

Published in:

2020

By:

Walker, Logan A.;
Sovic, Michael G.;
Chiang, Chi-Ling;
Hu, Eileen;
Denninger, Jiyeon K.;
Chen, Xi;
Kirby, Elizabeth D.;
Byrd, John C.;
Muthusamy, Natarajan;
Bundschuh, Ralf;
Yan, Pearlly

Publication type:

journal article

Effect of BRCA2 sequence variants predicted todisrupt exonic splice enhancers on BRCA2transcripts.

Published in:

BMC Medical Genetics, 2010, v. 11, p. 80, doi. 10.1186/1471-2350-11-1

By:

Whiley, Phillip J.;
Pettigrew, Christopher A.;
Brewster, Brooke L.;
Walker, Logan C.;
Spurdle, Amanda B.;
Brown, Melissa A.

Publication type:

Article

Evaluation of a 5-Tier Scheme Proposed for Classification of Sequence Variants Using Bioinformatic and Splicing Assay Data: Inter-Reviewer Variability and Promotion of Minimum Reporting Guidelines.

Published in:

Human Mutation, 2013, v. 34, n. 10, p. 1424, doi. 10.1002/humu.22388

By:

Walker, Logan C.;
Whiley, Phillip J.;
Houdayer, Claude;
Hansen, Thomas V. O.;
Vega, Ana;
Santamarina, Marta;
Blanco, Ana;
Fachal, Laura;
Southey, Melissa C.;
Lafferty, Alan;
Colombo, Mara;
De Vecchi, Giovanna;
Radice, Paolo;
Spurdle, Amanda B.

Publication type:

Article

Splicing and multifactorial analysis of intronic BRCA1 and BRCA2 sequence variants identifies clinically significant splicing aberrations up to 12 nucleotides from the intron/exon boundary.

Published in:

Human Mutation, 2011, v. 32, n. 6, p. 678, doi. 10.1002/humu.21495

By:

Whiley, Phillip J.;
Guidugli, Lucia;
Walker, Logan C.;
Healey, Sue;
Thompson, Bryony A.;
Lakhani, Sunil R.;
Da Silva, Leonard M.;
Investigators, kConFab;
Tavtigian, Sean V.;
Goldgar, David E.;
Brown, Melissa A.;
Couch, Fergus J.;
Spurdle, Amanda B.

Publication type:

Article

Detection of splicing aberrations caused by BRCA1 and BRCA2 sequence variants encoding missense substitutions: implications for prediction of pathogenicity.

Published in:

Human Mutation, 2010, v. 31, n. 6, p. E1484, doi. 10.1002/humu.21267

By:

Walker, Logan C.;
Whiley, Phillip J.;
Couch, Fergus J.;
Farrugia, Daniel J.;
Healey, Sue;
Eccles, Diana M.;
Lin, Feng;
Butler, Samantha A.;
Goff, Sheila A.;
Thompson, Bryony A.;
Lakhani, Sunil R.;
Da Silva, Leonard M.;
Tavtigian, Sean V.;
Goldgar, David E.;
Brown, Melissa A.;
Spurdle, Amanda B.

Publication type:

Article

Toward understanding the molecular basis of ovarian cancer.

Published in:

Human Mutation, 2009, v. 30, n. 12, p. v, doi. 10.1002/humu.21162

By:

Walker, Logan C.

Publication type:

Article

Publisher Correction: Whole Transcriptome Analysis of Renal Intercalated Cells Predicts Lipopolysaccharide Mediated Inhibition of Retinoid X Receptor alpha Function.

Published in:

2020

By:

Saxena, Vijay;
Fitch, James;
Ketz, John;
White, Peter;
Wetzel, Amy;
Chanley, Melinda A.;
Spencer, John D.;
Becknell, Brian;
Pierce, Keith R.;
Arregui, Sam W.;
Nelson, Raoul D.;
Schwartz, George J.;
Velazquez, Victoria;
Walker, Logan A.;
Chen, Xi;
Yan, Pearlly;
Hains, David S.;
Schwaderer, Andrew L.

Publication type:

Correction Notice

Nanopore sequencing of full-length BRCA1 mRNA transcripts reveals co-occurrence of known exon skipping events.

Published in:

2017

By:

de Jong, Lucy C.;
Cree, Simone;
Lattimore, Vanessa;
Wiggins, George A. R.;
Spurdle, Amanda B.;
Miller, Allison;
Kennedy, Martin A.;
Walker, Logan C.;
kConFab Investigators

Publication type:

journal article

Increased genomic burden of germline copy number variants is associated with early onset breast cancer: Australian breast cancer family registry.

Published in:

2017

By:

Walker, Logan C.;
Pearson, John F.;
Wiggins, George A. R.;
Giles, Graham G.;
Hopper, John L.;
Southey, Melissa C.

Publication type:

journal article

GSR is not essential for the maintenance of antioxidant defenses in mouse cochlea: Possible role of the thioredoxin system as a functional backup for GSR.

Published in:

PLoS ONE, 2017, v. 12, n. 7, p. 1, doi. 10.1371/journal.pone.0180817

By:

Han, Chul;
Kim, Mi-Jung;
Ding, Dalian;
Park, Hyo-Jin;
White, Karessa;
Walker, Logan;
Gu, Tongjun;
Tanokura, Masaru;
Yamasoba, Tatsuya;
Linser, Paul;
Salvi, Richard;
Someya, Shinichi

Publication type:

Article

The Impact on Life questionnaire: validation for elective surgery prioritisation in New Zealand prioritisation criteria in orthopaedic surgery.

Published in:

2016

By:

Chan, Georgina;
Bezuidenhout, Louret;
Walker, Logan;
Rowan, Robert

Publication type:

journal article

Meeting the challenges of interpreting variants of unknown clinical significance in BRCA testing.

Published in:

2015

By:

Lattimore, Vanessa;
Currie, Margaret;
Lintott, Caroline;
Sullivan, Jan;
Robinson, Bridget A.;
Walker, Logan C.

Publication type:

journal article

Bitbow Enables Highly Efficient Neuronal Lineage Tracing and Morphology Reconstruction in Single Drosophila Brains.

Published in:

Frontiers in Neural Circuits, 2021, v. 15, p. 1, doi. 10.3389/fncir.2021.732183

By:

Li, Ye;
Walker, Logan A.;
Zhao, Yimeng;
Edwards, Erica M.;
Michki, Nigel S.;
Cheng, Hon Pong Jimmy;
Ghazzi, Marya;
Chen, Tiffany Y.;
Chen, Maggie;
Roossien, Douglas H.;
Cai, Dawen

Publication type:

Article

Quantifying BRCA1 and BRCA2 mRNA Isoform Expression Levels in Single Cells.

Published in:

International Journal of Molecular Sciences, 2019, v. 20, n. 3, p. 693, doi. 10.3390/ijms20030693

By:

Lattimore, Vanessa L.;
Pearson, John F.;
Morley-Bunker, Arthur E.;
Investigators, kConFab;
Spurdle, Amanda B.;
Robinson, Bridget A.;
Currie, Margaret J.;
Walker, Logan C.

Publication type:

Article

Association of chromosome band 8q22 copy number gain with high grade invasive breast carcinomas by assessment of core needle biopsies.

Published in:

Genes, Chromosomes & Cancer, 2008, v. 47, n. 5, p. 405, doi. 10.1002/gcc.20545

By:

Walker, Logan C.;
Harris, Gavin C.;
Wells, J. Elisabeth;
Robinson, Bridget A.;
Morris, Christine M.

Publication type:

Article

Clinical implications of the genetics of sporadic colorectal cancer.

Published in:

ANZ Journal of Surgery, 2019, v. 89, n. 10, p. 1224, doi. 10.1111/ans.15074

By:

Fischer, Jesse;
Walker, Logan C.;
Robinson, Bridget A.;
Frizelle, Frank A.;
Church, James M.;
Eglinton, Tim W.

Publication type:

Article

Whole Transcriptome Analysis of Renal Intercalated Cells Predicts Lipopolysaccharide Mediated Inhibition of Retinoid X Receptor alpha Function.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-018-36921-z

By:

Saxena, Vijay;
Fitch, James;
Ketz, John;
White, Peter;
Wetzel, Amy;
Chanley, Melinda A.;
Spencer, John D.;
Becknell, Brian;
Pierce, Keith R.;
Arregui, Sam W.;
Nelson, Raoul D.;
Schwartz, George J.;
Velazquez, Victoria;
Walker, Logan A.;
Chen, Xi;
Yan, Pearlly;
Hains, David S.;
Schwaderer, Andrew L.

Publication type:

Article

Loss of IDH2 Accelerates Age-related Hearing Loss in Male Mice.

Published in:

Scientific Reports, 2018, p. 1, doi. 10.1038/s41598-018-23436-w

By:

White, Karessa;
Mi-Jung Kim;
Chul Han;
Hyo-Jin Park;
Dalian Ding;
Boyd, Kevin;
Walker, Logan;
Linser, Paul;
Meneses, Zaimary;
Slade, Cole;
Hirst, Jonathan;
Santostefano, Katherine;
Naohiro Terada;
Takuya Miyakawa;
Masaru Tanokura;
Salvi, Richard;
Someya, Shinichi

Publication type:

Article

The Role of Constitutional Copy Number Variants in Breast Cancer.

Published in:

Microarrays (2076-3905), 2015, v. 4, n. 3, p. 407, doi. 10.3390/microarrays4030407

By:

Walker, Logan C.;
Wiggins, George A. R.;
Pearson, John F.

Publication type:

Article

Combined genetic and splicing analysis of BRCA1 c.[594-2A>C; 641A>G] highlights the relevance of naturally occurring in-frame transcripts for developing disease gene variant classification algorithms.

Published in:

Human Molecular Genetics, 2016, v. 25, n. 11, p. 2256, doi. 10.1093/hmg/ddw094

By:

de la Hoya, Miguel;
Soukarieh, Omar;
López-Perolio, Irene;
Vega, Ana;
Walker, Logan C.;
van Ierland, Yvette;
Baralle, Diana;
Santamariña, Marta;
Lattimore, Vanessa;
Wijnen, Juul;
Whiley, Philip;
Blanco, Ana;
Raponi, Michela;
Hauke, Jan;
Wappenschmidt, Barbara;
Becker, Alexandra;
Hansen, Thomas V. O.;
Behar, Raquel;
Niederacher, Diether;
Arnold, Norbert

Publication type:

Article

Targeted RNA‐seq successfully identifies normal and pathogenic splicing events in breast/ovarian cancer susceptibility and Lynch syndrome genes.

Published in:

International Journal of Cancer, 2019, v. 145, n. 2, p. 401, doi. 10.1002/ijc.32114

By:

Brandão, Rita D.;
Mensaert, Klaas;
López‐Perolio, Irene;
Tserpelis, Demis;
Xenakis, Markos;
Lattimore, Vanessa;
Walker, Logan C.;
Kvist, Anders;
Vega, Ana;
Gutiérrez‐Enríquez, Sara;
Díez, Orland;
Hoya, Miguel;
Spurdle, Amanda B.;
De Meyer, Tim;
Blok, Marinus J.

Publication type:

Article

Light microscopy based approach for mapping connectivity with molecular specificity.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18422-8

By:

Shen, Fred Y.;
Harrington, Margaret M.;
Walker, Logan A.;
Cheng, Hon Pong Jimmy;
Boyden, Edward S.;
Cai, Dawen

Publication type:

Article

Cytomegalovirus and Epstein-Barr Virus in Breast Cancer.

Published in:

PLoS ONE, 2015, v. 10, n. 2, p. 1, doi. 10.1371/journal.pone.0118989

By:

Richardson, Ann K.;
Currie, Margaret J.;
Robinson, Bridget A.;
Morrin, Helen;
Phung, Yen;
Pearson, John F.;
Anderson, Trevor P.;
Potter, John D.;
Walker, Logan C.

Publication type:

Article

Dual-Color Fluorescence <i>In Situ</i> Hybridization Reveals an Association of Chromosome 8q22 but Not 8p21 Imbalance with High Grade Invasive Breast Carcinoma.

Published in:

PLoS ONE, 2013, v. 8, n. 7, p. 1, doi. 10.1371/journal.pone.0070790

By:

Walker, Logan C.;
McDonald, Margaret;
Wells, J. Elisabeth;
Harris, Gavin C.;
Robinson, Bridget A.;
Morris, Christine M.

Publication type:

Article

Impact of COVID-19 on health research in New Zealand: a case study of a research-intensive campus.

Published in:

Journal of the Royal Society of New Zealand, 2021, v. 51, p. S75, doi. 10.1080/03036758.2020.1867202

By:

Stamp, Lisa K.;
Cameron, Vicky A.;
Woodfield, Tim B. F.;
Walker, Logan;
Currie, Margaret;
Templeton, Evie;
Pilbrow, Anna P.;
Tabakakis, Kosta;
Phillips, Elisabeth;
Lim, Khoon S.

Publication type:

Article

Detecting rare copy number variants from Illumina genotyping arrays with the CamCNV pipeline: Segmentation of z‐scores improves detection and reliability.

Published in:

Genetic Epidemiology, 2021, v. 45, n. 3, p. 237, doi. 10.1002/gepi.22367

By:

Dennis, Joe;
Walker, Logan;
Tyrer, Jonathan;
Michailidou, Kyriaki;
Easton, Douglas F.

Publication type:

Article

Differential Expression of BARD1 Isoforms in Melanoma.

Published in:

Genes, 2021, v. 12, n. 2, p. 320, doi. 10.3390/genes12020320

By:

McDougall, Lorissa I.;
Powell, Ryan M.;
Ratajska, Magdalena;
Lynch-Sutherland, Chi F.;
Hossain, Sultana Mehbuba;
Wiggins, George A. R.;
Harazin-Lechowska, Agnieszka;
Cybulska-Stopa, Bożena;
Motwani, Jyoti;
Macaulay, Erin C.;
Reid, Glen;
Walker, Logan C.;
Ryś, Janusz;
Eccles, Michael R.;
Kumar, Rajiv;
Winqvist, Robert

Publication type:

Article

Robust Transcriptional Profiling and Identification of Differentially Expressed Genes With Low Input RNA Sequencing of Adult Hippocampal Neural Stem and Progenitor Populations.

Published in:

Frontiers in Molecular Neuroscience, 2022, v. 14, p. 1, doi. 10.3389/fnmol.2022.810722

By:

Denninger, Jiyeon K.;
Walker, Logan A.;
Chen, Xi;
Turkoglu, Altan;
Pan, Alex;
Tapp, Zoe;
Senthilvelan, Sakthi;
Rindani, Raina;
Kokiko-Cochran, Olga N.;
Bundschuh, Ralf;
Yan, Pearlly;
Kirby, Elizabeth D.

Publication type:

Article

Genome-wide association study identifies a common variant associated with risk of endometrial cancer.

Published in:

Nature Genetics, 2011, v. 43, n. 5, p. 451, doi. 10.1038/ng.812

By:

Spurdle, Amanda B.;
Thompson, Deborah J.;
Ahmed, Shahana;
Ferguson, Kaltin;
Healey, Catherine S.;
O'Mara, Tracy;
Walker, Logan C.;
Montgomery, Stephen B.;
Dermitzakis, Emmanouil T.;
Fahey, Paul;
Montgomery, Grant W.;
Webb, Penelope M.;
Fasching, Peter A.;
Beckmann, Matthias W.;
Ekici, Arif B.;
Hein, Alexander;
Lambrechts, Diether;
Coenegrachts, Lieve;
Vergote, Ignace;
Amant, Frederic

Publication type:

Article

Increased gene expression variability in BRCA1-associated and basal-like breast tumours.

Published in:

Breast Cancer Research & Treatment, 2021, v. 189, n. 2, p. 363, doi. 10.1007/s10549-021-06328-y

By:

Wiggins, George A. R.;
Black, Michael A.;
Dunbier, Anita;
Morley-Bunker, Arthur E.;
Pearson, John F.;
Walker, Logan C.

Publication type:

Article

Under-ascertainment of breast cancer susceptibility gene carriers in a cohort of New Zealand female breast cancer patients.

Published in:

Breast Cancer Research & Treatment, 2021, v. 185, n. 3, p. 583, doi. 10.1007/s10549-020-05986-8

By:

Lattimore, Vanessa;
Parsons, Michael T.;
Spurdle, Amanda B.;
Pearson, John;
Lehnert, Klaus;
Sullivan, Jan;
Lintott, Caroline;
Bawden, Suzannah;
Morrin, Helen;
Robinson, Bridget;
Walker, Logan

Publication type:

Article

Germline copy number variants are not associated with globally acquired copy number changes in familial breast tumours.

Published in:

Breast Cancer Research & Treatment, 2012, v. 134, n. 3, p. 1005, doi. 10.1007/s10549-012-2024-6

By:

Walker, Logan;
Krause, Lutz;
Spurdle, Amanda;
Waddell, Nic

Publication type:

Article

Use of expression data and the CGEMS genome-wide breast cancer association study to identify genes that may modify risk in BRCA1/2 mutation carriers.

Published in:

Breast Cancer Research & Treatment, 2008, v. 112, n. 2, p. 229, doi. 10.1007/s10549-007-9848-5

By:

Walker, Logan;
Waddell, Nic;
Ten Haaf, Anette;
Grimmond, Sean;
Spurdle, Amanda

Publication type:

Article

Rare germline copy number variants (CNVs) and breast cancer risk.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-021-02990-6

By:

Dennis, Joe;
Tyrer, Jonathan P.;
Walker, Logan C.;
Michailidou, Kyriaki;
Dorling, Leila;
Bolla, Manjeet K.;
Wang, Qin;
Ahearn, Thomas U.;
Andrulis, Irene L.;
Anton-Culver, Hoda;
Antonenkova, Natalia N.;
Arndt, Volker;
Aronson, Kristan J.;
Freeman, Laura E. Beane;
Beckmann, Matthias W.;
Behrens, Sabine;
Benitez, Javier;
Bermisheva, Marina;
Bogdanova, Natalia V.;
Bojesen, Stig E.

Publication type:

Article

Investigation of Experimental Factors That Underlie BRCA1/2 mRNA Isoform Expression Variation: Recommendations for Utilizing Targeted RNA Sequencing to Evaluate Potential Spliceogenic Variants.

Published in:

Frontiers in Oncology, 2018, p. 1, doi. 10.3389/fonc.2018.00140

By:

Lattimore, Vanessa L.;
Pearson, John F.;
Currie, Margaret J.;
Spurdle, Amanda B.;
Robinson, Bridget A.;
Walker, Logan C.

Publication type:

Article

Familial Mutations of the Transcription Factor RUNX1 (AML1, CBFA2) Predispose to Acute Myeloid Leukemia.

Published in:

Leukemia & Lymphoma, 2004, v. 45, n. 1, p. 1, doi. 10.1080/1042819031000139611

By:

Ganly, Peter;
Walker, Logan C.;
Morris, Christine M.

Publication type:

Article

A novel inherited mutation of the transcription factor RUNX1 causes thrombocytopenia and may predispose to acute myeloid leukaemia.

Published in:

British Journal of Haematology, 2002, v. 117, n. 4, p. 878, doi. 10.1046/j.1365-2141.2002.03512.x

By:

Walker, Logan C;
Stevens, Jane;
Campbell, Hamish;
Corbett, Rob;
Spearing, Ruth;
Heaton, David;
Macdonald, Donald H;
Morris, Christine M;
Ganly, Peter

Publication type:

Article

Use of DNA--Damaging Agents and RNA Pooling to Assess Expression Profiles Associated with BRCA1 and BRCA2 Mutation Status in Familial Breast Cancer Patients.

Published in:

PLoS Genetics, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pgen.1000850

By:

Walker, Logan C.;
Thompson, Bryony A.;
Waddell, Nic;
Grimmond, Sean M.;
Spurdle, Amanda B.

Publication type:

Article

BRCA1 and BRCA2 Missense Variants of High and Low Clinical Significance Influence Lymphoblastoid Cell Line Post-Irradiation Gene Expression.

Published in:

PLoS Genetics, 2008, v. 4, n. 5, p. 1, doi. 10.1371/journal.pgen.1000080

By:

Waddell, Nic;
Ten Haaf, Anette;
Marsh, Anna;
Johnson, Julie;
Walker, Logan C.;
Gongora, Milena;
Brown, Melissa;
Grover, Piyush;
Girolami, Mark;
Grimmond, Sean;
Chenevix-Trench, Georgia;
Spurdle, Amanda B.

Publication type:

Article