Works matching AU Gabernet, Gisela

Results: 25

RAGE is a key regulator of ductular reaction-mediated fibrosis during cholestasis.

Published in:

EMBO Reports, 2025, v. 26, n. 3, p. 880, doi. 10.1038/s44319-024-00356-7

By:

Lam, Wai-Ling Macrina;
Gabernet, Gisela;
Poth, Tanja;
Sator-Schmitt, Melanie;
Oquendo, Morgana Barroso;
Kast, Bettina;
Lohr, Sabrina;
de Ponti, Aurora;
Weiß, Lena;
Schneider, Martin;
Helm, Dominic;
Müller-Decker, Karin;
Schirmacher, Peter;
Heikenwälder, Mathias;
Klingmüller, Ursula;
Schneller, Doris;
Geisler, Fabian;
Nahnsen, Sven;
Angel, Peter

Publication type:

Article

Cladribine treatment specifically affects peripheral blood memory B cell clones and clonal expansion in multiple sclerosis patients.

Published in:

Frontiers in Immunology, 2023, v. 14, p. 01, doi. 10.3389/fimmu.2023.1133967

By:

Ruschil, Christoph;
Gabernet, Gisela;
Kemmerer, Constanze Louisa;
Jarboui, Mohamed Ali;
Klose, Franziska;
Poli, Sven;
Ziemann, Ulf;
Nahnsen, Sven;
Kowarik, Markus Christian

Publication type:

Article

In silico design and optimization of selective membranolytic anticancer peptides.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-47568-9

By:

Gabernet, Gisela;
Gautschi, Damian;
Müller, Alex T.;
Neuhaus, Claudia S.;
Armbrecht, Lucas;
Dittrich, Petra S.;
Hiss, Jan A.;
Schneider, Gisbert

Publication type:

Article

Hybrid Network Model for 'Deep Learning' of Chemical Data: Application to Antimicrobial Peptides.

Published in:

Molecular Informatics, 2017, v. 36, n. 1/2, p. n/a, doi. 10.1002/minf.201600011

By:

Schneider, Petra;
Müller, Alex T.;
Gabernet, Gisela;
Button, Alexander L.;
Posselt, Gernot;
Wessler, Silja;
Hiss, Jan A.;
Schneider, Gisbert

Publication type:

Article

Sparse Neural Network Models of Antimicrobial Peptide-Activity Relationships.

Published in:

Molecular Informatics, 2016, v. 35, n. 11/12, p. 606, doi. 10.1002/minf.201600029

By:

Müller, Alex T.;
Kaymaz, Aral C.;
Gabernet, Gisela;
Posselt, Gernot;
Wessler, Silja;
Hiss, Jan A.;
Schneider, Gisbert

Publication type:

Article

A single-cell atlas of circulating immune cells over the first 2 months of age in extremely premature infants.

Published in:

Science Translational Medicine, 2025, v. 17, n. 788, p. 1, doi. 10.1126/scitranslmed.adr0942

By:

Olaloye, Oluwabunmi;
Gu, Weihong;
Gehlhaar, Arne;
Sabuwala, Burhanuddin;
Eke, Chino K.;
Li, Yujia;
Kehoe, Tessa;
Farmer, Rohit;
Gabernet, Gisela;
Lucas, Carrie L.;
Tsang, John S.;
Lakhani, Saquib A.;
Taylor, Sarah N.;
Tseng, George;
Kleinstein, Steven H.;
Konnikova, Liza

Publication type:

Article

modlAMP: Python for antimicrobial peptides.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2753, doi. 10.1093/bioinformatics/btx285

By:

Müller, Alex T.;
Gabernet, Gisela;
Hiss, Jan A.;
Schneider, Gisbert

Publication type:

Article

Clinical and Genetic Tumor Characteristics of Responding and Non-Responding Patients to PD-1 Inhibition in Hepatocellular Carcinoma.

Published in:

Cancers, 2020, v. 12, n. 12, p. 3830, doi. 10.3390/cancers12123830

By:

Spahn, Stephan;
Roessler, Daniel;
Pompilia, Radu;
Gabernet, Gisela;
Gladstone, Beryl Primrose;
Horger, Marius;
Biskup, Saskia;
Feldhahn, Magdalena;
Nahnsen, Sven;
Hilke, Franz J.;
Scheiner, Bernhard;
Dufour, Jean-François;
De Toni, Enrico N.;
Pinter, Matthias;
Malek, Nisar P.;
Bitzer, Michael

Publication type:

Article

nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 7, p. 1, doi. 10.1371/journal.pcbi.1012265

By:

Gabernet, Gisela;
Marquez, Susanna;
Bjornson, Robert;
Peltzer, Alexander;
Meng, Hailong;
Aron, Edel;
Lee, Noah Y.;
Jensen, Cole;
Ladd, David;
Polster, Mark;
Hanssen, Friederike;
Heumos, Simon;
Yaari, Gur;
Kowarik, Markus C.;
Nahnsen, Sven;
Kleinstein, Steven H.

Publication type:

Article

Simulated Molecular Evolution for Anticancer Peptide Design.

Published in:

Angewandte Chemie, 2019, v. 131, n. 6, p. 1688, doi. 10.1002/ange.201811215

By:

Neuhaus, Claudia S.;
Gabernet, Gisela;
Steuer, Christian;
Root, Katharina;
Hiss, Jan A.;
Zenobi, Renato;
Schneider, Gisbert

Publication type:

Article

De-novo-Fragmententwurf für die Wirkstoffforschung und chemische Biologie.

Published in:

Angewandte Chemie, 2015, v. 127, n. 50, p. 15294, doi. 10.1002/ange.201508055

By:

Rodrigues, Tiago;
Reker, Daniel;
Welin, Martin;
Caldera, Michael;
Brunner, Cyrill;
Gabernet, Gisela;
Schneider, Petra;
Walse, Björn;
Schneider, Gisbert

Publication type:

Article

De Novo Fragment Design for Drug Discovery and Chemical Biology.

Published in:

Angewandte Chemie International Edition, 2015, v. 54, n. 50, p. 15079, doi. 10.1002/anie.201508055

By:

Rodrigues, Tiago;
Reker, Daniel;
Welin, Martin;
Caldera, Michael;
Brunner, Cyrill;
Gabernet, Gisela;
Schneider, Petra;
Walse, Björn;
Schneider, Gisbert

Publication type:

Article

mlf-core: a framework for deterministic machine learning.

Published in:

Bioinformatics, 2023, v. 39, n. 4, p. 1, doi. 10.1093/bioinformatics/btad164

By:

Heumos, Lukas;
Ehmele, Philipp;
Kuhn Cuellar, Luis;
Menden, Kevin;
Miller, Edmund;
Lemke, Steffen;
Gabernet, Gisela;
Nahnsen, Sven

Publication type:

Article

Nf-Root: A Best-Practice Pipeline for Deep-Learning-Based Analysis of Apoplastic pH in Microscopy Images of Developmental Zones in Plant Root Tissue.

Published in:

Quantitative Plant Biology, 2024, v. 5, p. 1, doi. 10.1017/qpb.2024.11

By:

Wanner, Julian;
Cuellar, Luis Kuhn;
Rausch, Luiselotte;
Berendzen, Kenneth W.;
Wanke, Friederike;
Gabernet, Gisela;
Harter, Klaus;
Nahnsen, Sven

Publication type:

Article

Scalable and efficient DNA sequencing analysis on different compute infrastructures aiding variant discovery.

Published in:

NAR Genomics & Bioinformatics, 2024, v. 6, n. 2, p. 1, doi. 10.1093/nargab/lqae031

By:

Hanssen, Friederike;
Garcia, Maxime U.;
Folkersen, Lasse;
Pedersen, Anders Sune;
Lescai, Francesco;
Jodoin, Susanne;
Miller, Edmund;
Seybold, Matthias;
Wacker, Oskar;
Smith, Nicholas;
Gabernet, Gisela;
Nahnsen, Sven

Publication type:

Article

How tool combinations in different pipeline versions affect the outcome in RNA-seq analysis.

Published in:

NAR Genomics & Bioinformatics, 2024, v. 6, n. 1, p. 1, doi. 10.1093/nargab/lqae020

By:

Perelo, Louisa Wessels;
Gabernet, Gisela;
Straub, Daniel;
Nahnsen, Sven

Publication type:

Article

nf-core/mag: a best-practice pipeline for metagenome hybrid assembly and binning.

Published in:

NAR Genomics & Bioinformatics, 2022, v. 4, n. 1, p. 1, doi. 10.1093/nargab/lqac007

By:

Krakau, Sabrina;
Straub, Daniel;
Gourlé, Hadrien;
Gabernet, Gisela;
Nahnsen, Sven

Publication type:

Article

Specific Induction of Double Negative B Cells During Protective and Pathogenic Immune Responses.

Published in:

Frontiers in Immunology, 2020, v. 11, p. N.PAG, doi. 10.3389/fimmu.2020.606338

By:

Ruschil, Christoph;
Gabernet, Gisela;
Lepennetier, Gildas;
Heumos, Simon;
Kaminski, Miriam;
Hracsko, Zsuzsanna;
Irmler, Martin;
Beckers, Johannes;
Ziemann, Ulf;
Nahnsen, Sven;
Owens, Gregory P.;
Bennett, Jeffrey L.;
Hemmer, Bernhard;
Kowarik, Markus C.

Publication type:

Article

In-depth analysis of serum antibodies against Epstein-Barr virus lifecycle proteins, and EBNA1, ANO2, GlialCAM and CRYAB peptides in patients with multiple sclerosis.

Published in:

Frontiers in Immunology, 2024, p. 1, doi. 10.3389/fimmu.2024.1487523

By:

Vasilenko, Nicole;
Tieck, Maria P.;
Michel, Tanja;
Schembecker, Sonja;
Schwarz, Patricia;
Guenther, Anna;
Ruschil, Christoph;
Poli, Sven;
Ziemann, Ulf;
Giede-Jeppe, Antje;
Gabernet, Gisela;
Dulovic, Alex;
Kowarik, Markus C.

Publication type:

Article

Designing Anticancer Peptides by Constructive Machine Learning.

Published in:

ChemMedChem, 2018, v. 13, n. 13, p. 1300, doi. 10.1002/cmdc.201800204

By:

Grisoni, Francesca;
Neuhaus, Claudia S.;
Gabernet, Gisela;
Müller, Alex T.;
Hiss, Jan A.;
Schneider, Gisbert

Publication type:

Article

Front Cover: Designing Anticancer Peptides by Constructive Machine Learning (ChemMedChem 13/2018).

Published in:

ChemMedChem, 2018, v. 13, n. 13, p. 1260, doi. 10.1002/cmdc.201800415

By:

Grisoni, Francesca;
Neuhaus, Claudia S.;
Gabernet, Gisela;
Müller, Alex T.;
Hiss, Jan A.;
Schneider, Gisbert

Publication type:

Article

Simulated Molecular Evolution for Anticancer Peptide Design.

Published in:

Angewandte Chemie International Edition, 2019, v. 58, n. 6, p. 1674, doi. 10.1002/anie.201811215

By:

Neuhaus, Claudia S.;
Gabernet, Gisela;
Steuer, Christian;
Root, Katharina;
Hiss, Jan A.;
Zenobi, Renato;
Schneider, Gisbert

Publication type:

Article

A data management infrastructure for the integration of imaging and omics data in life sciences.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 15, p. 1, doi. 10.1186/s12859-022-04584-3

By:

Kuhn Cuellar, Luis;
Friedrich, Andreas;
Gabernet, Gisela;
de la Garza, Luis;
Fillinger, Sven;
Seyboldt, Adrian;
Koch, Tobias;
zur Oven-Krockhaus, Sven;
Wanke, Friederike;
Richter, Sandra;
Thaiss, Wolfgang M.;
Horger, Marius;
Malek, Nisar;
Harter, Klaus;
Bitzer, Michael;
Nahnsen, Sven

Publication type:

Article

Next Generation Sequencing of Cerebrospinal Fluid B Cell Repertoires in Multiple Sclerosis and Other Neuro-Inflammatory Diseases—A Comprehensive Review.

Published in:

Diagnostics (2075-4418), 2021, v. 11, n. 10, p. 1871, doi. 10.3390/diagnostics11101871

By:

Ruschil, Christoph;
Kemmerer, Constanze Louisa;
Beller, Lena;
Gabernet, Gisela;
Kowarik, Markus Christian

Publication type:

Article

De novo design of anticancer peptides by ensemble artificial neural networks.

Published in:

Journal of Molecular Modeling, 2019, v. 25, n. 5, p. N.PAG, doi. 10.1007/s00894-019-4007-6

By:

Grisoni, Francesca;
Neuhaus, Claudia S.;
Hishinuma, Miyabi;
Gabernet, Gisela;
Hiss, Jan A.;
Kotera, Masaaki;
Schneider, Gisbert

Publication type:

Article