Works matching IS 1553734X AND DT 2023 AND VI 19 AND IP 10

Results: 67

Correction: Hybrid predictive coding: Inferring, fast and slow.

Published in:: 2023
Publication type:: Correction Notice

Correction: A spatial vaccination strategy to reduce the risk of vaccine-resistant variants.

Published in:

2023

By:

Zhang, Xiyun;
Lobinska, Gabriela;
Feldman, Michal;
Dekel, Eddie;
Nowak, Martin A.;
Pilpel, Yitzhak;
Pauzner, Yonatan;
Barzel, Baruch;
Pauzner, Ady

Publication type:

Correction Notice

Genome-scale metabolic modeling of the human gut bacterium Bacteroides fragilis strain 638R.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011594

By:

Neal, Maxwell;
Thiruppathy, Deepan;
Zengler, Karsten

Publication type:

Article

Deep convolutional and conditional neural networks for large-scale genomic data generation.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011584

By:

Yelmen, Burak;
Decelle, Aurélien;
Boulos, Leila Lea;
Szatkownik, Antoine;
Furtlehner, Cyril;
Charpiat, Guillaume;
Jay, Flora

Publication type:

Article

Correction: A quantitative modelling approach for DNA repair on a population scale.

Published in:: 2023
Publication type:: Correction Notice

Correction: Individual-based model highlights the importance of trade-offs for virus-host population dynamics and long-term co-existence.

Published in:

2023

By:

Pourhasanzade, Fateme;
Iyer, Swami;
Tjendra, Jesslyn;
Landor, Lotta;
Våge, Selina

Publication type:

Correction Notice

Correction: Intrinsic motivation for choice varies with individual risk attitudes and the controllability of the environment.

Published in:

2023

By:

Munuera, Jérôme;
Agost, Marta Ribes;
Bendetowicz, David;
Kérébel, Adrien;
Chambon, Valérian;
Lau, Brian

Publication type:

Correction Notice

Efficient multi-fidelity computation of blood coagulation under flow.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011583

By:

Guerrero-Hurtado, Manuel;
Garcia-Villalba, Manuel;
Gonzalo, Alejandro;
Martinez-Legazpi, Pablo;
Kahn, Andrew M.;
McVeigh, Elliot;
Bermejo, Javier;
del Alamo, Juan C.;
Flores, Oscar

Publication type:

Article

Recognition and reconstruction of cell differentiation patterns with deep learning.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011582

By:

Dirk, Robin;
Fischer, Jonas L.;
Schardt, Simon;
Ankenbrand, Markus J.;
Fischer, Sabine C.

Publication type:

Article

Inference of transmission dynamics and retrospective forecast of invasive meningococcal disease.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011564

By:

Cascante-Vega, Jaime;
Galanti, Marta;
Schley, Katharina;
Pei, Sen;
Shaman, Jeffrey

Publication type:

Article

Discovering individual-specific gait signatures from data-driven models of neuromechanical dynamics.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011556

By:

Winner, Taniel S.;
Rosenberg, Michael C.;
Jain, Kanishk;
Kesar, Trisha M.;
Ting, Lena H.;
Berman, Gordon J.

Publication type:

Article

Merging short and stranded long reads improves transcript assembly.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011576

By:

Kainth, Amoldeep S.;
Haddad, Gabriela A.;
Hall, Johnathon M.;
Ruthenburg, Alexander J.

Publication type:

Article

Dose-response in modulating brain function with transcranial direct current stimulation: From local to network levels.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011572

By:

Soleimani, Ghazaleh;
Kupliki, Rayus;
Paulus, Martin;
Ekhtiari, Hamed

Publication type:

Article

Infer global, predict local: Quantity-relevance trade-off in protein fitness predictions from sequence data.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011521

By:

Posani, Lorenzo;
Rizzato, Francesca;
Monasson, Rémi;
Cocco, Simona

Publication type:

Article

Objects guide human gaze behavior in dynamic real-world scenes.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011512

By:

Roth, Nicolas;
Rolfs, Martin;
Hellwich, Olaf;
Obermayer, Klaus

Publication type:

Article

Bayesian modeling of the impact of antibiotic resistance on the efficiency of MRSA decolonization.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1010898

By:

Ojala, Fanni;
Sater, Mohamad R. Abdul;
Miller, Loren G.;
McKinnell, James A.;
Hayden, Mary K.;
Huang, Susan S.;
Grad, Yonatan H.;
Marttinen, Pekka

Publication type:

Article

Genes for highly abundant proteins in Escherichia coli avoid 5' codons that promote ribosomal initiation.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011581

By:

Lewin, Loveday E.;
Daniels, Kate G.;
Hurst, Laurence D.

Publication type:

Article

Rapid automated 3-D pose estimation of larval zebrafish using a physical model-trained neural network.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011566

By:

Ravan, Aniket;
Feng, Ruopei;
Gruebele, Martin;
Chemla, Yann R.

Publication type:

Article

Spatial Configurations of 3D Extracellular Matrix Collagen Density and Anisotropy Simultaneously Guide Angiogenesis.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011553

By:

LaBelle, Steven A.;
Poulson IV, A. Marsh;
Maas, Steve A.;
Rauff, Adam;
Ateshian, Gerard A.;
Weiss, Jeffrey A.

Publication type:

Article

Combining the dynamic model and deep neural networks to identify the intensity of interventions during COVID-19 pandemic.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011535

By:

He, Mengqi;
Tang, Sanyi;
Xiao, Yanni

Publication type:

Article

Analyzing histone ChIP-seq data with a bin-based probability of being signal.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011568

By:

Hecht, Vivian;
Dong, Kevin;
Rajesh, Sreshtaa;
Shpilker, Polina;
Wekhande, Siddarth;
Shoresh, Noam

Publication type:

Article

The role of leptomeningeal collaterals in redistributing blood flow during stroke.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011496

By:

Epp, Robert;
Glück, Chaim;
Binder, Nadine Felizitas;
El Amki, Mohamad;
Weber, Bruno;
Wegener, Susanne;
Jenny, Patrick;
Schmid, Franca

Publication type:

Article

A recurrent neural network model of prefrontal brain activity during a working memory task.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011555

By:

Piwek, Emilia P.;
Stokes, Mark G.;
Summerfield, Christopher

Publication type:

Article

Modelling how plant cell-cycle progression leads to cell size regulation.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011503

By:

Williamson, Daniel;
Tasker-Brown, William;
Murray, James A. H.;
Jones, Angharad R.;
Band, Leah R.

Publication type:

Article

Refphase: Multi-sample phasing reveals haplotype-specific copy number heterogeneity.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011379

By:

Watkins, Thomas B. K.;
Colliver, Emma C.;
Huska, Matthew R.;
Kaufmann, Tom L.;
Lim, Emilia L.;
Duncan, Cody B.;
Haase, Kerstin;
Van Loo, Peter;
Swanton, Charles;
McGranahan, Nicholas;
Schwarz, Roland F.

Publication type:

Article

OpenCap: Human movement dynamics from smartphone videos.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011462

By:

Uhlrich, Scott D.;
Falisse, Antoine;
Kidziński, Łukasz;
Muccini, Julie;
Ko, Michael;
Chaudhari, Akshay S.;
Hicks, Jennifer L.;
Delp, Scott L.

Publication type:

Article

Tissue Forge: Interactive biological and biophysics simulation environment.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1010768

By:

Sego, T. J.;
Sluka, James P.;
Sauro, Herbert M.;
Glazier, James A.

Publication type:

Article

An integrated approach to the characterization of immune repertoires using AIMS: An Automated Immune Molecule Separator.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011577

By:

Boughter, Christopher T.;
Meier-Schellersheim, Martin

Publication type:

Article

Physical modeling of ribosomes along messenger RNA: Estimating kinetic parameters from ribosome profiling experiments using a ballistic model.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011522

By:

Chevalier, Carole;
Dorignac, Jérôme;
Ibrahim, Yahaya;
Choquet, Armelle;
David, Alexandre;
Ripoll, Julie;
Rivals, Eric;
Geniet, Frédéric;
Walliser, Nils-Ole;
Palmeri, John;
Parmeggiani, Andrea;
Walter, Jean-Charles

Publication type:

Article

Wall shear stress and pressure patterns in aortic stenosis patients with and without aortic dilation captured by high-performance image-based computational fluid dynamics.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011479

By:

Zolfaghari, Hadi;
Andiapen, Mervyn;
Baumbach, Andreas;
Mathur, Anthony;
Kerswell, Rich R.

Publication type:

Article

Catalyst: Fast and flexible modeling of reaction networks.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011530

By:

Loman, Torkel E.;
Ma, Yingbo;
Ilin, Vasily;
Gowda, Shashi;
Korsbo, Niklas;
Yewale, Nikhil;
Rackauckas, Chris;
Isaacson, Samuel A.

Publication type:

Article

Phi fluctuates with surprisal: An empirical pre-study for the synthesis of the free energy principle and integrated information theory.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011346

By:

Lundbak Olesen, Christoffer;
Waade, Peter Thestrup;
Albantakis, Larissa;
Mathys, Christoph

Publication type:

Article

PARROT: Prediction of enzyme abundances using protein-constrained metabolic models.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011549

By:

Ferreira, Mauricio Alexander de Moura;
Silveira, Wendel Batista da;
Nikoloski, Zoran

Publication type:

Article

AGouTI–Flexible Annotation of Genomic and Transcriptomic Intervals.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011527

By:

Kosiński, Jan G.;
Żywicki, Marek

Publication type:

Article

Distilling identifiable and interpretable dynamic models from biological data.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011014

By:

Massonis, Gemma;
Villaverde, Alejandro F.;
Banga, Julio R.

Publication type:

Article

Reframing dopamine: A controlled controller at the limbic-motor interface.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011569

By:

Lloyd, Kevin;
Dayan, Peter

Publication type:

Article

Integrated information theory (IIT) 4.0: Formulating the properties of phenomenal existence in physical terms.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011465

By:

Albantakis, Larissa;
Barbosa, Leonardo;
Findlay, Graham;
Grasso, Matteo;
Haun, Andrew M.;
Marshall, William;
Mayner, William G. P.;
Zaeemzadeh, Alireza;
Boly, Melanie;
Juel, Bjørn E.;
Sasai, Shuntaro;
Fujii, Keiko;
David, Isaac;
Hendren, Jeremiah;
Lang, Jonathan P.;
Tononi, Giulio

Publication type:

Article

Lévy movements and a slowly decaying memory allow efficient collective learning in groups of interacting foragers.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011528

By:

Falcón-Cortés, Andrea;
Boyer, Denis;
Aldana, Maximino;
Ramos-Fernández, Gabriel

Publication type:

Article

Pervasive, conserved secondary structure in highly charged protein regions.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011565

By:

Triandafillou, Catherine G.;
Pan, Rosalind Wenshan;
Dinner, Aaron R.;
Drummond, D. Allan

Publication type:

Article

A 2D model to study how secondary growth affects the self-supporting behaviour of climbing plants.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011538

By:

Vecchiato, Giacomo;
Hattermann, Tom;
Palladino, Michele;
Tedone, Fabio;
Heuret, Patrick;
Rowe, Nick P.;
Marcati, Pierangelo

Publication type:

Article

Rational social distancing policy during epidemics with limited healthcare capacity.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011533

By:

Schnyder, Simon K.;
Molina, John J.;
Yamamoto, Ryoichi;
Turner, Matthew S.

Publication type:

Article

Establishing brain states in neuroimaging data.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011571

By:

Dezhina, Zalina;
Smallwood, Jonathan;
Xu, Ting;
Turkheimer, Federico E.;
Moran, Rosalyn J.;
Friston, Karl J.;
Leech, Robert;
Fagerholm, Erik D.

Publication type:

Article

Batch normalization followed by merging is powerful for phenotype prediction integrating multiple heterogeneous studies.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1010608

By:

Gao, Yilin;
Sun, Fengzhu

Publication type:

Article

Short-term neuronal and synaptic plasticity act in synergy for deviance detection in spiking networks.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011554

By:

Kern, Felix Benjamin;
Chao, Zenas C.

Publication type:

Article

Temperature sensitive contact modes allosterically gate TRPV3.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011545

By:

Burns, Daniel;
Venditti, Vincenzo;
Potoyan, Davit A.

Publication type:

Article

Conserved and divergent signals in 5' splice site sequences across fungi, metazoa and plants.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011540

By:

Beckel, Maximiliano;
Kaufman, Bruno;
Yanovsky, Marcelo;
Chernomoretz, Ariel

Publication type:

Article

Reproducibility of biophysical in silico neuron states and spikes from event-based partial histories.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011548

By:

Cudone, Evan;
Lower, Amelia M.;
McDougal, Robert A.

Publication type:

Article

Assessing the performance of methods for cell clustering from single-cell DNA sequencing data.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1010480

By:

Khan, Rituparna;
Mallory, Xian

Publication type:

Article

Modeling functional cell types in spike train data.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011509

By:

Zdeblick, Daniel N.;
Shea-Brown, Eric T.;
Witten, Daniela M.;
Buice, Michael A.

Publication type:

Article

Improving deep models of protein-coding potential with a Fourier-transform architecture and machine translation task.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011526

By:

Valencia, Joseph D.;
Hendrix, David A.

Publication type:

Article