Works matching IS 1553734X AND DT 2023 AND VI 19 AND IP 7

Results: 51

M-current modulation of cortical slow oscillations: Network dynamics and computational modeling.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011246

By:

Dalla Porta, Leonardo;
Barbero-Castillo, Almudena;
Sanchez-Sanchez, Jose Manuel;
Sanchez-Vives, Maria V.

Publication type:

Article

SpikeShip: A method for fast, unsupervised discovery of high-dimensional neural spiking patterns.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011335

By:

Sotomayor-Gómez, Boris;
Battaglia, Francesco P.;
Vinck, Martin

Publication type:

Article

Multiscale effects of excitatory-inhibitory homeostasis in lesioned cortical networks: A computational study.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011279

By:

Páscoa dos Santos, Francisco;
Vohryzek, Jakub;
Verschure, Paul F. M. J.

Publication type:

Article

Unified tumor growth mechanisms from multimodel inference and dataset integration.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011215

By:

Beik, Samantha P.;
Harris, Leonard A.;
Kochen, Michael A.;
Sage, Julien;
Quaranta, Vito;
Lopez, Carlos F.

Publication type:

Article

Gentle and fast all-atom model refinement to cryo-EM densities via a maximum likelihood approach.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011255

By:

Blau, Christian;
Yvonnesdotter, Linnea;
Lindahl, Erik

Publication type:

Article

Gene regulatory network inference using mixed-norms regularized multivariate model with covariance selection.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1010832

By:

Mbebi, Alain J.;
Nikoloski, Zoran

Publication type:

Article

Implications of differential size-scaling of cell-cycle regulators on cell size homeostasis.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011336

By:

Ji, Xiangrui;
Lin, Jie

Publication type:

Article

Mechanisms of sensorimotor adaptation in a hierarchical state feedback control model of speech.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011244

By:

Kim, Kwang S.;
Gaines, Jessica L.;
Parrell, Benjamin;
Ramanarayanan, Vikram;
Nagarajan, Srikantan S.;
Houde, John F.

Publication type:

Article

Time-travelling pathogens and their risk to ecological communities.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011268

By:

Strona, Giovanni;
Bradshaw, Corey J. A.;
Cardoso, Pedro;
Gotelli, Nicholas J.;
Guillaume, Frédéric;
Manca, Federica;
Mustonen, Ville;
Zaman, Luis

Publication type:

Article

Individual identity information persists in learned calls of introduced parrot populations.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011231

By:

Smith-Vidaurre, Grace;
Pérez-Marrufo, Valeria;
Hobson, Elizabeth A.;
Salinas-Melgoza, Alejandro;
Wright, Timothy F.

Publication type:

Article

The Canadian Open Neuroscience Platform—An open science framework for the neuroscience community.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011230

By:

Harding, Rachel J.;
Bermudez, Patrick;
Bernier, Alexander;
Beauvais, Michael;
Bellec, Pierre;
Hill, Sean;
Karakuzu, Agâh;
Knoppers, Bartha M.;
Pavlidis, Paul;
Poline, Jean-Baptiste;
Roskams, Jane;
Stikov, Nikola;
Stone, Jessica;
Strother, Stephen;
Evans, Alan C.

Publication type:

Article

Evaluating the utility of brightfield image data for mechanism of action prediction.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011323

By:

Harrison, Philip John;
Gupta, Ankit;
Rietdijk, Jonne;
Wieslander, Håkan;
Carreras-Puigvert, Jordi;
Georgiev, Polina;
Wählby, Carolina;
Spjuth, Ola;
Sintorn, Ida-Maria

Publication type:

Article

Correction: Opponent learning with different representations in the cortico-basal ganglia pathways can develop obsession-compulsion cycle.

Published in:: 2023
Publication type:: Correction Notice

Micelle-like clusters in phase-separated Nanog condensates: A molecular simulation study.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011321

By:

Mizutani, Azuki;
Tan, Cheng;
Sugita, Yuji;
Takada, Shoji

Publication type:

Article

Models of Purkinje cell dendritic tree selection during early cerebellar development.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011320

By:

Kato, Mizuki;
De Schutter, Erik

Publication type:

Article

DeepGenePrior: A deep learning model for prioritizing genes affected by copy number variants.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011249

By:

Rahaie, Zahra;
Rabiee, Hamid R.;
Alinejad-Rokny, Hamid

Publication type:

Article

The shadowing effect of initial expectation on learning asymmetry.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1010751

By:

Ni, Yinmei;
Sun, Jingwei;
Li, Jian

Publication type:

Article

Theoretical efficiency limits and speed-efficiency trade-off in myosin motors.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011310

By:

Vilfan, Andrej;
Šarlah, Andreja

Publication type:

Article

Neural activity induces strongly coupled electro-chemo-mechanical interactions and fluid flow in astrocyte networks and extracellular space—A computational study.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1010996

By:

Sætra, Marte J.;
Ellingsrud, Ada J.;
Rognes, Marie E.

Publication type:

Article

Risk averse reproduction numbers improve resurgence detection.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011332

By:

Parag, Kris V.;
Obolski, Uri

Publication type:

Article

Ten quick tips for bioinformatics analyses using an Apache Spark distributed computing environment.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011272

By:

Chicco, Davide;
Ferraro Petrillo, Umberto;
Cattaneo, Giuseppe

Publication type:

Article

Indirect reciprocity with stochastic and dual reputation updates.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011271

By:

Murase, Yohsuke;
Hilbe, Christian

Publication type:

Article

Ten simple rules for scientists engaging in science communication.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011251

By:

Borowiec, Brittney G.

Publication type:

Article

Ten quick tips for editing Wikidata.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011235

By:

Shafee, Thomas;
Mietchen, Daniel;
Lubiana, Tiago;
Jemielniak, Dariusz;
Waagmeester, Andra

Publication type:

Article

Gene signature discovery and systematic validation across diverse clinical cohorts for TB prognosis and response to treatment.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1010770

By:

Vargas, Roger;
Abbott, Liam;
Bower, Daniel;
Frahm, Nicole;
Shaffer, Mike;
Yu, Wen-Han

Publication type:

Article

Network feature-based phenotyping of leaf venation robustly reconstructs the latent space.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1010581

By:

Iwamasa, Kohei;
Noshita, Koji

Publication type:

Article

Repeatability and timing of tropical influenza epidemics.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011317

By:

Servadio, Joseph L.;
Thai, Pham Quang;
Choisy, Marc;
Boni, Maciej F.

Publication type:

Article

Monte Carlo samplers for efficient network inference.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011256

By:

Kilic, Zeliha;
Schweiger, Max;
Moyer, Camille;
Pressé, Steve

Publication type:

Article

LinguaPhylo: A probabilistic model specification language for reproducible phylogenetic analyses.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011226

By:

Drummond, Alexei J.;
Chen, Kylie;
Mendes, Fábio K.;
Xie, Dong

Publication type:

Article

Continuous action with a neurobiologically inspired computational approach reveals the dynamics of selection history.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011283

By:

Makwana, Mukesh;
Zhang, Fan;
Heinke, Dietmar;
Song, Joo-Hyun

Publication type:

Article

Development of Accurate Long-lead COVID-19 Forecast.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011278

By:

Yang, Wan;
Shaman, Jeffrey

Publication type:

Article

Influence of the vessel wall geometry on the wall-induced migration of red blood cells.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011241

By:

Zhang, Ying;
Fai, Thomas G.

Publication type:

Article

RNA covariation at helix-level resolution for the identification of evolutionarily conserved RNA structure.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011262

By:

Rivas, Elena

Publication type:

Article

A multi-scale clutch model for adhesion complex mechanics.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011250

By:

Venturini, Chiara;
Sáez, Pablo

Publication type:

Article

Modality independent or modality specific? Common computations underlie confidence judgements in visual and auditory decisions.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011245

By:

West, Rebecca K.;
Harrison, William J.;
Matthews, Natasha;
Mattingley, Jason B.;
Sewell, David K.

Publication type:

Article

DeepChIA-PET: Accurately predicting ChIA-PET from Hi-C and ChIP-seq with deep dilated networks.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011307

By:

Liu, Tong;
Wang, Zheng

Publication type:

Article

The interplay between age structure and cultural transmission.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011297

By:

Kandler, Anne;
Fogarty, Laurel;
Karsdorp, Folgert

Publication type:

Article

Improve the model of disease subtype heterogeneity by leveraging external summary data.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011236

By:

Fu, Sheng;
Purdue, Mark P.;
Zhang, Han;
Qin, Jing;
Song, Lei;
Berndt, Sonja I.;
Yu, Kai

Publication type:

Article

Mapping the semi-nested community structure of 3D chromosome contact networks.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011185

By:

Bernenko, Dolores;
Lee, Sang Hoon;
Stenberg, Per;
Lizana, Ludvig

Publication type:

Article

LRT: Integrative analysis of scRNA-seq and scTCR-seq data to investigate clonal differentiation heterogeneity.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011300

By:

Xie, Juan;
Jeon, Hyeongseon;
Xin, Gang;
Ma, Qin;
Chung, Dongjun

Publication type:

Article

Sequential mutations in exponentially growing populations.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011289

By:

Nicholson, Michael D.;
Cheek, David;
Antal, Tibor

Publication type:

Article

Leveraging epigenomes and three-dimensional genome organization for interpreting regulatory variation.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011286

By:

Baur, Brittany;
Shin, Junha;
Schreiber, Jacob;
Zhang, Shilu;
Zhang, Yi;
Manjunath, Mohith;
Song, Jun S.;
Stafford Noble, William;
Roy, Sushmita

Publication type:

Article

Image-based flow simulation of platelet aggregates under different shear rates.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1010965

By:

Hao, Yue;
Závodszky, Gábor;
Tersteeg, Claudia;
Barzegari, Mojtaba;
Hoekstra, Alfons G.

Publication type:

Article

Explainable multi-task learning improves the parallel estimation of polygenic risk scores for many diseases through shared genetic basis.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011211

By:

Badré, Adrien;
Pan, Chongle

Publication type:

Article

Optimal evaluation of energy yield and driving force in microbial metabolic pathway variants.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011264

By:

Taha, Ahmed;
Patón, Mauricio;
Penas, David R.;
Banga, Julio R.;
Rodríguez, Jorge

Publication type:

Article

Computational model of integrin adhesion elongation under an actin fiber.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011237

By:

Campbell, Samuel;
Mendoza, Michelle C.;
Rammohan, Aravind;
McKenzie, Matthew E.;
Bidone, Tamara C.

Publication type:

Article

Ten quick tips for avoiding pitfalls in multi-omics data integration analyses.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011224

By:

Chicco, Davide;
Cumbo, Fabio;
Angione, Claudio

Publication type:

Article

Constructing a full, multiple-layer interactome for SARS-CoV-2 in the context of lung disease: Linking the virus with human genes and microbes.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011222

By:

Lou, Shaoke;
Yang, Mingjun;
Li, Tianxiao;
Zhao, Weihao;
Cevasco, Hannah;
Yang, Yucheng T.;
Gerstein, Mark

Publication type:

Article

Integrative modeling of diverse protein-peptide systems using CABS-dock.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011275

By:

Puławski, Wojciech;
Koliński, Andrzej;
Koliński, Michał

Publication type:

Article

Biological complexity facilitates tuning of the neuronal parameter space.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011212

By:

Schneider, Marius;
Bird, Alexander D.;
Gidon, Albert;
Triesch, Jochen;
Jedlicka, Peter;
Cuntz, Hermann

Publication type:

Article