Works matching IS 1553734X AND DT 2023 AND VI 19 AND IP 6

Results: 60

Mechanisms of human dynamic object recognition revealed by sequential deep neural networks.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011169

By:

Sörensen, Lynn K. A.;
Bohté, Sander M.;
de Jong, Dorina;
Slagter, Heleen A.;
Scholte, H. Steven

Publication type:

Article

Computational simulations of tumor growth and treatment response: Benefits of high-frequency, low-dose drug regimens and concurrent vascular normalization.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011131

By:

Nikmaneshi, Mohammad R.;
Jain, Rakesh K.;
Munn, Lance L.

Publication type:

Article

Supervised learning and model analysis with compositional data.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011240

By:

Huang, Shimeng;
Ailer, Elisabeth;
Kilbertus, Niki;
Pfister, Niklas

Publication type:

Article

Dynamic recycling of extracellular ATP in human epithelial intestinal cells.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011196

By:

Saffioti, Nicolas Andres;
Alvarez, Cora Lilia;
Bazzi, Zaher;
Gentilini, María Virginia;
Gondolesi, Gabriel Eduardo;
Schwarzbaum, Pablo Julio;
Schachter, Julieta

Publication type:

Article

Domestic cat nose functions as a highly efficient coiled parallel gas chromatograph.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011119

By:

Wu, Zhenxing;
Jiang, Jianbo;
Lischka, Fritz W.;
McGrane, Scott J.;
Porat-Mesenco, Yael;
Zhao, Kai

Publication type:

Article

Individualized network analysis reveals link between the gut microbiome, diet intervention and Gestational Diabetes Mellitus.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011193

By:

Liu, Yimeng;
Amit, Guy;
Zhao, Xiaolei;
Wu, Na;
Li, Daqing;
Bashan, Amir

Publication type:

Article

Laminar specificity of the auditory perceptual awareness negativity: A biophysical modeling study.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011003

By:

Fernandez Pujol, Carolina;
Blundon, Elizabeth G.;
Dykstra, Andrew R.

Publication type:

Article

Adaptive dynamics of memory-one strategies in the repeated donation game.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010987

By:

LaPorte, Philip;
Hilbe, Christian;
Nowak, Martin A.

Publication type:

Article

Mslar: Microbial synthetic lethal and rescue database.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011218

By:

Zhu, Sen-Bin;
Jiang, Qian-Hu;
Chen, Zhi-Guo;
Zhou, Xiang;
Jin, Yan-ting;
Deng, Zixin;
Guo, Feng-Biao

Publication type:

Article

A dynamic calcium-force relationship model for sag behavior in fast skeletal muscle.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011178

By:

Kim, Hojeong;
Heckman, Charles J.

Publication type:

Article

Nonlinear eco-evolutionary games with global environmental fluctuations and local environmental feedbacks.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011269

By:

Jiang, Yishen;
Wang, Xin;
Liu, Longzhao;
Wei, Ming;
Zhao, Jingwu;
Zheng, Zhiming;
Tang, Shaoting

Publication type:

Article

Teaching students to R<sup>3</sup>eason, not merely to solve problem sets: The role of philosophy and visual data communication in accessible data science education.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011160

By:

Ciubotariu, Ilinca I.;
Bosch, Gundula

Publication type:

Article

Charting the spatial dynamics of early SARS-CoV-2 transmission in Washington state.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011263

By:

Brett, Tobias S.;
Bansal, Shweta;
Rohani, Pejman

Publication type:

Article

Cell-type annotation with accurate unseen cell-type identification using multiple references.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011261

By:

Xiong, Yi-Xuan;
Wang, Meng-Guo;
Chen, Luonan;
Zhang, Xiao-Fei

Publication type:

Article

Mathematical modeling the order of driver gene mutations in colorectal cancer.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011225

By:

Li, Lingling;
Hu, Yulu;
Xu, Yunshan;
Tang, Sanyi

Publication type:

Article

Cell to whole organ global sensitivity analysis on a four-chamber heart electromechanics model using Gaussian processes emulators.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011257

By:

Strocchi, Marina;
Longobardi, Stefano;
Augustin, Christoph M.;
Gsell, Matthias A. F.;
Petras, Argyrios;
Rinaldi, Christopher A.;
Vigmond, Edward J.;
Plank, Gernot;
Oates, Chris J.;
Wilkinson, Richard D.;
Niederer, Steven A.

Publication type:

Article

Deep learning approaches to landmark detection in tsetse wing images.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011194

By:

Geldenhuys, Dylan S.;
Josias, Shane;
Brink, Willie;
Makhubele, Mulanga;
Hui, Cang;
Landi, Pietro;
Bingham, Jeremy;
Hargrove, John;
Hazelbag, Marijn C.

Publication type:

Article

Feeling lucky? prospective and retrospective cues for sensorimotor confidence.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010740

By:

Fassold, Marissa E.;
Locke, Shannon M.;
Landy, Michael S.

Publication type:

Article

Analysis of high-dimensional metabolomics data with complex temporal dynamics using RM-ASCA+.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011221

By:

Erdős, Balázs;
Westerhuis, Johan A.;
Adriaens, Michiel E.;
O'Donovan, Shauna D.;
Xie, Ren;
Singh-Povel, Cécile M.;
Smilde, Age K.;
Arts, Ilja C. W.

Publication type:

Article

Community detection in empirical kinase networks identifies new potential members of signalling pathways.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010459

By:

Basanta, Celia De Los Angeles Colomina;
Bazzi, Marya;
Hijazi, Maruan;
Bessant, Conrad;
Cutillas, Pedro R.

Publication type:

Article

Correction: The contribution of the basal ganglia and cerebellum to motor learning: A neuro-computational approach.

Published in:

2023

By:

Baladron, Javier;
Vitay, Julien;
Fietzek, Torsten;
Hamker, Fred H.

Publication type:

Correction Notice

The biomechanics of chewing and suckling in the infant: A potential mechanism for physiologic metopic suture closure.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011227

By:

Haravu, Pranav N.;
Gonzalez, Miguel;
Nathan, Shelby L.;
Ross, Callum F.;
Panagiotopoulou, Olga;
Reid, Russell R.

Publication type:

Article

Ten simple rules for the sharing of bacterial genotype—Phenotype data on antimicrobial resistance.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011129

By:

Chindelevitch, Leonid;
van Dongen, Maarten;
Graz, Heather;
Pedrotta, Antonio;
Suresh, Anita;
Uplekar, Swapna;
Jauneikaite, Elita;
Wheeler, Nicole

Publication type:

Article

Gain modulation and odor concentration invariance in early olfactory networks.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011176

By:

Marachlian, Emiliano;
Huerta, Ramón;
Locatelli, Fernando F.

Publication type:

Article

Learning from the past: A short term forecast method for the COVID-19 incidence curve.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010790

By:

Morel, Jean-David;
Morel, Jean-Michel;
Alvarez, Luis

Publication type:

Article

iPiDA-SWGCN: Identification of piRNA-disease associations based on Supplementarily Weighted Graph Convolutional Network.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011242

By:

Hou, Jialu;
Wei, Hang;
Liu, Bin

Publication type:

Article

Grouping promotes both partnership and rivalry with long memory in direct reciprocity.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011228

By:

Murase, Yohsuke;
Baek, Seung Ki

Publication type:

Article

BioSeq-Diabolo: Biological sequence similarity analysis using Diabolo.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011214

By:

Li, Hongliang;
Liu, Bin

Publication type:

Article

Knowledge graph embedding for profiling the interaction between transcription factors and their target genes.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011207

By:

Wu, Yang-Han;
Huang, Yu-An;
Li, Jian-Qiang;
You, Zhu-Hong;
Hu, Peng-Wei;
Hu, Lun;
Leung, Victor C. M.;
Du, Zhi-Hua

Publication type:

Article

Impact of variability in cell cycle periodicity on cell population dynamics.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011080

By:

Nowak, Chance M.;
Quarton, Tyler;
Bleris, Leonidas

Publication type:

Article

Modeling the sequence dependence of differential antibody binding in the immune response to infectious disease.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010773

By:

Chowdhury, Robayet;
Taguchi, Alexander T.;
Kelbauskas, Laimonas;
Stafford, Phillip;
Diehnelt, Chris;
Zhao, Zhan-Gong;
Williamson, Phillip C.;
Green, Valerie;
Woodbury, Neal W.

Publication type:

Article

Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011232

By:

Skalnik, Christopher J.;
Cheah, Sean Y.;
Yang, Mica Y.;
Wolff, Mattheus B.;
Spangler, Ryan K.;
Talman, Lee;
Morrison, Jerry H.;
Peirce, Shayn M.;
Agmon, Eran;
Covert, Markus W.

Publication type:

Article

Distinguishing between different percolation regimes in noisy dynamic networks with an application to epileptic seizures.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011188

By:

Zhu, Xiaojing;
Shappell, Heather;
Kramer, Mark A.;
Chu, Catherine J.;
Kolaczyk, Eric D.

Publication type:

Article

MetaNovo: An open-source pipeline for probabilistic peptide discovery in complex metaproteomic datasets.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011163

By:

Potgieter, Matthys G.;
Nel, Andrew J. M.;
Fortuin, Suereta;
Garnett, Shaun;
Wendoh, Jerome M.;
Tabb, David L.;
Mulder, Nicola J.;
Blackburn, Jonathan M.

Publication type:

Article

Opponent learning with different representations in the cortico-basal ganglia pathways can develop obsession-compulsion cycle.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011206

By:

Sato, Reo;
Shimomura, Kanji;
Morita, Kenji

Publication type:

Article

Ten simple rules for organizations to support research data sharing.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011136

By:

Champieux, Robin;
Solomonides, Anthony;
Conte, Marisa;
Rojevsky, Svetlana;
Phuong, Jimmy;
Dorr, David A.;
Zampino, Elizabeth;
Wilcox, Adam;
Carson, Matthew B.;
Holmes, Kristi

Publication type:

Article

Bioschemas training profiles: A set of specifications for standardizing training information to facilitate the discovery of training programs and resources.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011120

By:

Castro, Leyla Jael;
Palagi, Patricia M.;
Beard, Niall;
Attwood, Teresa K.;
Brazas, Michelle D.

Publication type:

Article

A model of colour appearance based on efficient coding of natural images.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011117

By:

Troscianko, Jolyon;
Osorio, Daniel

Publication type:

Article

Optimizing tuberculosis treatment efficacy: Comparing the standard regimen with Moxifloxacin-containing regimens.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010823

By:

Budak, Maral;
Cicchese, Joseph M.;
Maiello, Pauline;
Borish, H. Jacob;
White, Alexander G.;
Chishti, Harris B.;
Tomko, Jaime;
Frye, L. James;
Fillmore, Daniel;
Kracinovsky, Kara;
Sakal, Jennifer;
Scanga, Charles A.;
Lin, Philana Ling;
Dartois, Véronique;
Linderman, Jennifer J.;
Flynn, JoAnne L.;
Kirschner, Denise E.

Publication type:

Article

Stochastic simulations of self-organized elastogenesis in the developing lung.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011219

By:

Fan, Xiru;
Valenzuela, Cristian;
Zhao, Weijing;
Chen, Zi;
Wang, Dong;
Mentzer, Steven J.

Publication type:

Article

Recall DNA methylation levels at low coverage sites using a CNN model in WGBS.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011205

By:

Luo, Ximei;
Wang, Yansu;
Zou, Quan;
Xu, Lei

Publication type:

Article

Correction: Neural adaptation and fractional dynamics as a window to underlying neural excitability.

Published in:

2023

By:

Lundstrom, Brian Nils;
Richner, Thomas J.

Publication type:

Correction Notice

Optimal density of bacterial cells.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011177

By:

Pang, Tin Yau;
Lercher, Martin J.

Publication type:

Article

An information theoretic method to resolve millisecond-scale spike timing precision in a comprehensive motor program.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011170

By:

Putney, Joy;
Niebur, Tobias;
Wood, Leo;
Conn, Rachel;
Sponberg, Simon

Publication type:

Article

Spatial dynamics of malaria transmission.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010684

By:

Wu, Sean L.;
Henry, John M.;
Citron, Daniel T.;
Mbabazi Ssebuliba, Doreen;
Nakakawa Nsumba, Juliet;
Sánchez C., Héctor M.;
Brady, Oliver J.;
Guerra, Carlos A.;
García, Guillermo A.;
Carter, Austin R.;
Ferguson, Heather M.;
Afolabi, Bakare Emmanuel;
Hay, Simon I.;
Reiner Jr., Robert C.;
Kiware, Samson;
Smith, David L.

Publication type:

Article

Environmental dynamics shape perceptual decision bias.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011104

By:

Charlton, Julie A.;
Młynarski, Wiktor F.;
Bai, Yoon H.;
Hermundstad, Ann M.;
Goris, Robbe L. T.

Publication type:

Article

coiaf: Directly estimating complexity of infection with allele frequencies.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010247

By:

Paschalidis, Aris;
Watson, Oliver J.;
Aydemir, Ozkan;
Verity, Robert;
Bailey, Jeffrey A.

Publication type:

Article

Latent Dirichlet Allocation modeling of environmental microbiomes.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011075

By:

Kim, Anastasiia;
Sevanto, Sanna;
Moore, Eric R.;
Lubbers, Nicholas

Publication type:

Article

Hebbian learning with elasticity explains how the spontaneous motor tempo affects music performance synchronization.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011154

By:

Roman, Iran R.;
Roman, Adrian S.;
Kim, Ji Chul;
Large, Edward W.

Publication type:

Article

HaploCart: Human mtDNA haplogroup classification using a pangenomic reference graph human mtDNA haplogroup inference.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011148

By:

Rubin, Joshua Daniel;
Vogel, Nicola Alexandra;
Gopalakrishnan, Shyam;
Sackett, Peter Wad;
Renaud, Gabriel

Publication type:

Article