Works matching IS 1553734X AND DT 2023 AND VI 19 AND IP 8
Results: 71
E(3) equivariant graph neural networks for robust and accurate protein-protein interaction site prediction.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011435
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Phylogenetic inference of the emergence of sequence modules and protein-protein interactions in the ADAMTS-TSL family.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011404
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iCircDA-NEAE: Accelerated attribute network embedding and dynamic convolutional autoencoder for circRNA-disease associations prediction.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011344
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Automatic extraction of actin networks in plants.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011407
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Steady-state approximations for Hodgkin-Huxley cell models: Reduction of order for uterine smooth muscle cell model.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011359
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Modulation of antigen discrimination by duration of immune contacts in a kinetic proofreading model of T cell activation with extreme statistics.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011216
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Scoring epidemiological forecasts on transformed scales.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011393
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Estimating the epidemic reproduction number from temporally aggregated incidence data: A statistical modelling approach and software tool.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011439
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VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011422
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Accelerating Bayesian inference of dependency between mixed-type biological traits.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011419
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Structural identifiability of biomolecular controller motifs with and without flow measurements as model output.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011398
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Switching state-space modeling of neural signal dynamics.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011395
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Neural network models for influenza forecasting with associated uncertainty using Web search activity trends.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011392
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Prediction of DNA Methylation based on Multi-dimensional feature encoding and double convolutional fully connected convolutional neural network.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011370
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TFOFinder: Python program for identifying purine-only double-stranded stretches in the predicted secondary structure(s) of RNA targets.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011418
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Curated single cell multimodal landmark datasets for R/Bioconductor.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011324
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Disentangling Abstraction from Statistical Pattern Matching in Human and Machine Learning.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011316
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Rapid memory encoding in a recurrent network model with behavioral time scale synaptic plasticity.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011139
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Mathematical modeling indicates that regulatory inhibition of CD8<sup>+</sup> T cell cytotoxicity can limit efficacy of IL-15 immunotherapy in cases of high pre-treatment SIV viral load.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011425
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Flux balance analysis-based metabolic modeling of microbial secondary metabolism: Current status and outlook.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011391
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Inferring gene regulatory networks using transcriptional profiles as dynamical attractors.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010991
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STREAK: A supervised cell surface receptor abundance estimation strategy for single cell RNA-sequencing data using feature selection and thresholded gene set scoring.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011413
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Regulated bacterial interaction networks: A mathematical framework to describe competitive growth under inclusion of metabolite cross-feeding.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011402
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A subcomponent-guided deep learning method for interpretable cancer drug response prediction.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011382
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When does humoral memory enhance infection?
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011377
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Efficient sampling-based Bayesian Active Learning for synaptic characterization.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011342
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Metabolic modeling of sex-specific liver tissue suggests mechanism of differences in toxicological responses.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010927
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Enhancing reinforcement learning models by including direct and indirect pathways improves performance on striatal dependent tasks.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011385
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BALDR: A Web-based platform for informed comparison and prioritization of biomarker candidates for type 2 diabetes mellitus.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011403
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The blossoming of methods and software in computational biology.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011390
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The specious art of single-cell genomics.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011288
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Elucidation of genome-wide understudied proteins targeted by PROTAC-induced degradation using interpretable machine learning.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010974
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A physiologically based pharmacokinetic model to optimize the dosage regimen and withdrawal time of cefquinome in pigs.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011331
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An objective criterion to evaluate sequence-similarity networks helps in dividing the protein family sequence space.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010881
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Non-asymptotic transients away from steady states determine cellular responsiveness to dynamic spatial-temporal signals.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011388
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In-silico and in-vitro morphometric analysis of intestinal organoids.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011386
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serosim: An R package for simulating serological data arising from vaccination, epidemiological and antibody kinetics processes.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011384
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Prediction of opioid-related outcomes in a medicaid surgical population: Evidence to guide postoperative opiate therapy and monitoring.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011376
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Deconvolution of cancer cell states by the XDec-SM method.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011365
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A stochastic analysis of the interplay between antibiotic dose, mode of action, and bacterial competition in the evolution of antibiotic resistance.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011364
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A structured evaluation of genome-scale constraint-based modeling tools for microbial consortia.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011363
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The shape of cancer relapse: Topological data analysis predicts recurrence in paediatric acute lymphoblastic leukaemia.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011329
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Collaborative nowcasting of COVID-19 hospitalization incidences in Germany.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011394
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Practical sampling of constraint-based models: Optimized thinning boosts CHRR performance.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011378
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Influence of cell type specific infectivity and tissue composition on SARS-CoV-2 infection dynamics within human airway epithelium.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011356
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Functional and spatial rewiring principles jointly regulate context-sensitive computation.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011325
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Evaluation of vaginal microbiome equilibrium states identifies microbial parameters linked to resilience after menses and antibiotic therapy.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011295
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Receptive field sizes and neuronal encoding bandwidth are constrained by axonal conduction delays.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010871
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VarSCAT: A computational tool for sequence context annotations of genomic variants.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010727
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Intrinsic motivation for choice varies with individual risk attitudes and the controllability of the environment.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010551
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