Works matching IS 1553734X AND DT 2022 AND VI 18 AND IP 12

Results: 66

Plausible pathway for a host-parasite molecular replication network to increase its complexity through Darwinian evolution.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010709

By:

Kamiura, Rikuto;
Mizuuchi, Ryo;
Ichihashi, Norikazu

Publication type:

Article

Ten simple rules for how you can help make your lab a better place as a graduate student or postdoc.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010673

By:

Rillig, Matthias C.

Publication type:

Article

Ten quick tips for sequence-based prediction of protein properties using machine learning.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010669

By:

Hou, Qingzhen;
Waury, Katharina;
Gogishvili, Dea;
Feenstra, K. Anton

Publication type:

Article

Interneuronal network model of theta-nested fast oscillations predicts differential effects of heterogeneity, gap junctions and short term depression for hyperpolarizing versus shunting inhibition.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010094

By:

Via, Guillem;
Baravalle, Roman;
Fernandez, Fernando R.;
White, John A.;
Canavier, Carmen C.

Publication type:

Article

Monitoring real-time transmission heterogeneity from incidence data.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010078

By:

Zhang, Yunjun;
Britton, Tom;
Zhou, Xiaohua

Publication type:

Article

Model-based prioritization for acquiring protection.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010805

By:

Tashjian, Sarah M.;
Wise, Toby;
Mobbs, Dean

Publication type:

Article

Novel estimates reveal subnational heterogeneities in disease-relevant contact patterns in the United States.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010742

By:

Breen, Casey F.;
Mahmud, Ayesha S.;
Feehan, Dennis M.

Publication type:

Article

Stability and learning in excitatory synapses by nonlinear inhibitory plasticity.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010682

By:

Miehl, Christoph;
Gjorgjieva, Julijana

Publication type:

Article

Fine-grained, nonlinear registration of live cell movies reveals spatiotemporal organization of diffuse molecular processes.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009667

By:

Jiang, Xuexia;
Isogai, Tadamoto;
Chi, Joseph;
Danuser, Gaudenz

Publication type:

Article

A fast lasso-based method for inferring higher-order interactions.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010730

By:

Elmes, Kieran;
Heywood, Astra;
Huang, Zhiyi;
Gavryushkin, Alex

Publication type:

Article

Development of hidden Markov modeling method for molecular orientations and structure estimation from high-speed atomic force microscopy time-series images.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010384

By:

Ogane, Tomonori;
Noshiro, Daisuke;
Ando, Toshio;
Yamashita, Atsuko;
Sugita, Yuji;
Matsunaga, Yasuhiro

Publication type:

Article

Bayesian inference of multi-point macromolecular architecture mixtures at nanometre resolution.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010765

By:

Embacher, Peter A.;
Germanova, Tsvetelina E.;
Roscioli, Emanuele;
McAinsh, Andrew D.;
Burroughs, Nigel J.

Publication type:

Article

Robust and brain-like working memory through short-term synaptic plasticity.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010776

By:

Kozachkov, Leo;
Tauber, John;
Lundqvist, Mikael;
Brincat, Scott L.;
Slotine, Jean-Jacques;
Miller, Earl K.

Publication type:

Article

Fine-scale diversity of microbial communities due to satellite niches in boom and bust environments.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010244

By:

Fridman, Yulia;
Wang, Zihan;
Maslov, Sergei;
Goyal, Akshit

Publication type:

Article

Dynamic causal modelling shows a prominent role of local inhibition in alpha power modulation in higher visual cortex.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009988

By:

Van de Steen, Frederik;
Pinotsis, Dimitris;
Devos, Wouter;
Colenbier, Nigel;
Bassez, Iege;
Friston, Karl;
Marinazzo, Daniele

Publication type:

Article

Mesoscopic description of hippocampal replay and metastability in spiking neural networks with short-term plasticity.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010809

By:

Pietras, Bastian;
Schmutz, Valentin;
Schwalger, Tilo

Publication type:

Article

Mechanistic model for human brain metabolism and its connection to the neurovascular coupling.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010798

By:

Sundqvist, Nicolas;
Sten, Sebastian;
Thompson, Peter;
Andersson, Benjamin Jan;
Engström, Maria;
Cedersund, Gunnar

Publication type:

Article

The effects of base rate neglect on sequential belief updating and real-world beliefs.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010796

By:

Ashinoff, Brandon K.;
Buck, Justin;
Woodford, Michael;
Horga, Guillermo

Publication type:

Article

Integrating unsupervised language model with triplet neural networks for protein gene ontology prediction.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010793

By:

Zhu, Yi-Heng;
Zhang, Chengxin;
Yu, Dong-Jun;
Zhang, Yang

Publication type:

Article

The catecholamine precursor Tyrosine reduces autonomic arousal and decreases decision thresholds in reinforcement learning and temporal discounting.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010785

By:

Mathar, David;
Erfanian Abdoust, Mani;
Marrenbach, Tobias;
Tuzsus, Deniz;
Peters, Jan

Publication type:

Article

An individualized causal framework for learning intercellular communication networks that define microenvironments of individual tumors.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010761

By:

Chen, Xueer;
Chen, Lujia;
Kürten, Cornelius H. L.;
Jabbari, Fattaneh;
Vujanovic, Lazar;
Ding, Ying;
Lu, Binfeng;
Lu, Kevin;
Kulkarni, Aditi;
Tabib, Tracy;
Lafyatis, Robert;
Cooper, Gregory F.;
Ferris, Robert;
Lu, Xinghua

Publication type:

Article

Ten simple rules for empowering women in STEM.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010731

By:

Guevara-Ramírez, Patricia;
Ruiz-Pozo, Viviana A.;
Cadena-Ullauri, Santiago;
Salazar-Navas, Gabriela;
Bedón, Ana Acosta;
V-Vázquez, J. Faustino;
Zambrano, Ana Karina

Publication type:

Article

Allosteric regulation in STAT3 interdomains is mediated by a rigid core: SH2 domain regulation by CCD in D170A variant.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010794

By:

Zhao, Tingting;
Karki, Nischal;
Zoltowski, Brian D.;
Matthews, Devin A.

Publication type:

Article

Exploring a diverse world of effector domains and amyloid signaling motifs in fungal NLR proteins.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010787

By:

Wojciechowski, Jakub W.;
Tekoglu, Emirhan;
Gąsior-Głogowska, Marlena;
Coustou, Virginie;
Szulc, Natalia;
Szefczyk, Monika;
Kopaczyńska, Marta;
Saupe, Sven J.;
Dyrka, Witold

Publication type:

Article

A method to estimate the cellular composition of the mouse brain from heterogeneous datasets.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010739

By:

Rodarie, Dimitri;
Verasztó, Csaba;
Roussel, Yann;
Reimann, Michael;
Keller, Daniel;
Ramaswamy, Srikanth;
Markram, Henry;
Gewaltig, Marc-Oliver

Publication type:

Article

Improved visualization of high-dimensional data using the distance-of-distance transformation.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010764

By:

Liu, Jinke;
Vinck, Martin

Publication type:

Article

A mathematical model of potassium homeostasis: Effect of feedforward and feedback controls.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010607

By:

Stadt, Melissa M.;
Leete, Jessica;
Devinyak, Sophia;
Layton, Anita T.

Publication type:

Article

Environmental and ecological controls of the spatial distribution of microbial populations in aggregates.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010807

By:

Martinez-Rabert, Eloi;
van Amstel, Chiel;
Smith, Cindy;
Sloan, William T.;
Gonzalez-Cabaleiro, Rebeca

Publication type:

Article

scDSSC: Deep Sparse Subspace Clustering for scRNA-seq Data.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010772

By:

Wang, HaiYun;
Zhao, JianPing;
Zheng, ChunHou;
Su, YanSen

Publication type:

Article

Systematic comparison of differential expression networks in MTB mono-, HIV mono- and MTB/HIV co-infections for drug repurposing.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010744

By:

Jiang, Yao;
Zhang, Jia-Xuan;
Liu, Rong

Publication type:

Article

tension: A Python package for FORCE learning.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010722

By:

Liu, Lu Bin;
Losonczy, Attila;
Liao, Zhenrui

Publication type:

Article

Interacting active surfaces: A model for three-dimensional cell aggregates.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010762

By:

Torres-Sánchez, Alejandro;
Kerr Winter, Max;
Salbreux, Guillaume

Publication type:

Article

Genome-wide identification and characterization of DNA enhancers with a stacked multivariate fusion framework.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010779

By:

Wang, Yansong;
Hou, Zilong;
Yang, Yuning;
Wong, Ka-chun;
Li, Xiangtao

Publication type:

Article

Recalibrating probabilistic forecasts of epidemics.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010771

By:

Rumack, Aaron;
Tibshirani, Ryan J.;
Rosenfeld, Roni

Publication type:

Article

Using smartphone-GPS data to quantify human activity in green spaces.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010725

By:

Filazzola, Alessandro;
Xie, Garland;
Barrett, Kimberly;
Dunn, Andrea;
Johnson, Marc T. J.;
MacIvor, James Scott

Publication type:

Article

Eleven quick tips for data cleaning and feature engineering.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010718

By:

Chicco, Davide;
Oneto, Luca;
Tavazzi, Erica

Publication type:

Article

Ten simple rules and a template for creating workflows-as-applications.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010705

By:

Roach, Michael J.;
Pierce-Ward, N. Tessa;
Suchecki, Radoslaw;
Mallawaarachchi, Vijini;
Papudeshi, Bhavya;
Handley, Scott A.;
Brown, C. Titus;
Watson-Haigh, Nathan S.;
Edwards, Robert A.

Publication type:

Article

Ten simple rules for launching an academic research career.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010689

By:

Papin, Jason A.;
Keim-Malpass, Jessica;
Syed, Sana

Publication type:

Article

Systematic comparison of modeling fidelity levels and parameter inference settings applied to negative feedback gene regulation.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010683

By:

Coulier, Adrien;
Singh, Prashant;
Sturrock, Marc;
Hellander, Andreas

Publication type:

Article

Ten simple rules for failing successfully in academia.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010538

By:

Gaillard, Stefan;
van Viegen, Tara;
Veldsman, Michele;
Stefan, Melanie I.;
Cheplygina, Veronika

Publication type:

Article

CONGA: Copy number variation genotyping in ancient genomes and low-coverage sequencing data.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010788

By:

Söylev, Arda;
Çokoglu, Sevim Seda;
Koptekin, Dilek;
Alkan, Can;
Somel, Mehmet

Publication type:

Article

Sequence-sensitive elastic network captures dynamical features necessary for miR-125a maturation.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010777

By:

Mailhot, Olivier;
Frappier, Vincent;
Major, François;
Najmanovich, Rafael J.

Publication type:

Article

Sparse RNNs can support high-capacity classification.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010759

By:

Turcu, Denis;
Abbott, L. F.

Publication type:

Article

Interpreting tree ensemble machine learning models with endoR.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010714

By:

Ruaud, Albane;
Pfister, Niklas;
Ley, Ruth E.;
Youngblut, Nicholas D.

Publication type:

Article

Dissecting peripheral protein-membrane interfaces.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010346

By:

Tubiana, Thibault;
Sillitoe, Ian;
Orengo, Christine;
Reuter, Nathalie

Publication type:

Article

Correction: Humans combine value learning and hypothesis testing strategically in multi-dimensional probabilistic reward learning.

Published in:: 2022
Publication type:: Correction Notice

Close-kin mark-recapture methods to estimate demographic parameters of mosquitoes.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010755

By:

Sharma, Yogita;
Bennett, Jared B.;
Rašić, Gordana;
Marshall, John M.

Publication type:

Article

Mixed mechanism of conformational selection and induced fit as a molecular recognition process in the calreticulin family of proteins.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010661

By:

Mamidi, Ashalatha Sreshty;
Surolia, Avadhesha

Publication type:

Article

Metabolic reprogramming in Rheumatoid Arthritis Synovial Fibroblasts: A hybrid modeling approach.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010408

By:

Aghakhani, Sahar;
Soliman, Sylvain;
Niarakis, Anna

Publication type:

Article

Ten simple rules for creating a sense of belonging in your research group.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010688

By:

Ruedas-Gracia, Nidia;
Botham, Crystal M.;
Moore, Amber R.;
Peña, Courtney

Publication type:

Article