Works matching IS 1553734X AND DT 2022 AND VI 18 AND IP 11

Results: 58

Modelling the synergistic effect of bacteriophage and antibiotics on bacteria: Killers and drivers of resistance evolution.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010746

By:

Leclerc, Quentin J.;
Lindsay, Jodi A.;
Knight, Gwenan M.

Publication type:

Article

Optimized phylogenetic clustering of HIV-1 sequence data for public health applications.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010745

By:

Chato, Connor;
Feng, Yi;
Ruan, Yuhua;
Xing, Hui;
Herbeck, Joshua;
Kalish, Marcia;
Poon, Art F. Y.

Publication type:

Article

Cluster detection with random neighbourhood covering: Application to invasive Group A Streptococcal disease.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010726

By:

Cavallaro, Massimo;
Coelho, Juliana;
Ready, Derren;
Decraene, Valerie;
Lamagni, Theresa;
McCarthy, Noel D.;
Todkill, Dan;
Keeling, Matt J.

Publication type:

Article

Tracking human skill learning with a hierarchical Bayesian sequence model.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009866

By:

Éltető, Noémi;
Nemeth, Dezső;
Janacsek, Karolina;
Dayan, Peter

Publication type:

Article

Sampling effects and measurement overlap can bias the inference of neuronal avalanches.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010678

By:

Pinheiro Neto, Joao;
Spitzner, F. Paul;
Priesemann, Viola

Publication type:

Article

Efficient inference and identifiability analysis for differential equation models with random parameters.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010734

By:

Browning, Alexander P.;
Drovandi, Christopher;
Turner, Ian W.;
Jenner, Adrianne L.;
Simpson, Matthew J.

Publication type:

Article

Role of path information in visual perception of joint stiffness.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010729

By:

West Jr., A. Michael;
Huber, Meghan E.;
Hogan, Neville

Publication type:

Article

Inference of B cell clonal families using heavy/light chain pairing information.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010723

By:

Ralph, Duncan K.;
Matsen IV, Frederick A.

Publication type:

Article

The geometry of representational drift in natural and artificial neural networks.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010716

By:

Aitken, Kyle;
Garrett, Marina;
Olsen, Shawn;
Mihalas, Stefan

Publication type:

Article

Experimental validation of computerised models of clustering of platelet glycoprotein receptors that signal via tandem SH2 domain proteins.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010708

By:

Maqsood, Zahra;
Clark, Joanne C.;
Martin, Eleyna M.;
Cheung, Yam Fung Hilaire;
Morán, Luis A.;
Watson, Sean E. T.;
Pike, Jeremy A.;
Di, Ying;
Poulter, Natalie S.;
Slater, Alexandre;
Lange, Bodo M. H.;
Nieswandt, Bernhard;
Eble, Johannes A.;
Tomlinson, Mike G.;
Owen, Dylan M.;
Stegner, David;
Bridge, Lloyd J.;
Wierling, Christoph;
Watson, Steve P.

Publication type:

Article

A computational modeling approach for predicting multicell spheroid patterns based on signaling-induced differential adhesion.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010701

By:

Sivakumar, Nikita;
Warner, Helen V.;
Peirce, Shayn M.;
Lazzara, Matthew J.

Publication type:

Article

Trends in SARS-CoV-2 infection prevalence during England's roadmap out of lockdown, January to July 2021.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010724

By:

Eales, Oliver;
Wang, Haowei;
Haw, David;
Ainslie, Kylie E. C.;
Walters, Caroline E.;
Atchison, Christina;
Cooke, Graham;
Barclay, Wendy;
Ward, Helen;
Darzi, Ara;
Ashby, Deborah;
Donnelly, Christl A.;
Elliott, Paul;
Riley, Steven

Publication type:

Article

Humans combine value learning and hypothesis testing strategically in multi-dimensional probabilistic reward learning.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010699

By:

Song, Mingyu;
Baah, Persis A.;
Cai, Ming Bo;
Niv, Yael

Publication type:

Article

Exploring the mono-/bistability range of positively autoregulated signaling systems in the presence of competing transcription factor binding sites.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010738

By:

Gao, Rong;
Brokaw, Samantha E.;
Li, Zeyue;
Helfant, Libby J.;
Wu, Ti;
Malik, Muhammad;
Stock, Ann M.

Publication type:

Article

Look twice: A generalist computational model predicts return fixations across tasks and species.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010654

By:

Zhang, Mengmi;
Armendariz, Marcelo;
Xiao, Will;
Rose, Olivia;
Bendtz, Katarina;
Livingstone, Margaret;
Ponce, Carlos;
Kreiman, Gabriel

Publication type:

Article

Effective resistance against pandemics: Mobility network sparsification for high-fidelity epidemic simulations.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010650

By:

Mercier, Alexander;
Scarpino, Samuel;
Moore, Cristopher

Publication type:

Article

Interpreting and de-noising genetically engineered barcodes in a DNA virus.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010131

By:

Blois, Sylvain;
Goetz, Benjamin M.;
Bull, James J.;
Sullivan, Christopher S.

Publication type:

Article

Conflicting effects of recombination on the evolvability and robustness in neutrally evolving populations.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010710

By:

Klug, Alexander;
Krug, Joachim

Publication type:

Article

Deep reinforcement learning for optimal experimental design in biology.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010695

By:

Treloar, Neythen J.;
Braniff, Nathan;
Ingalls, Brian;
Barnes, Chris P.

Publication type:

Article

Social dilemmas of sociality due to beneficial and costly contagion.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010670

By:

Cooney, Daniel B.;
Morris, Dylan H.;
Levin, Simon A.;
Rubenstein, Daniel I.;
Romanczuk, Pawel

Publication type:

Article

Amino acid variants of SARS-CoV-2 papain-like protease have impact on drug binding.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010667

By:

Perlinska, Agata P.;
Stasiulewicz, Adam;
Nguyen, Mai Lan;
Swiderska, Karolina;
Zmudzinski, Mikolaj;
Maksymiuk, Alicja W.;
Drag, Marcin;
Sulkowska, Joanna I.

Publication type:

Article

HELIOS: High-speed sequence alignment in optics.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010665

By:

Maleki, Ehsan;
Akbari Rokn Abadi, Saeedeh;
Koohi, Somayyeh

Publication type:

Article

Coupling and heterogeneity modulate pacemaking capability in healthy and diseased two-dimensional sinoatrial node tissue models.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010098

By:

Campana, Chiara;
Ricci, Eugenio;
Bartolucci, Chiara;
Severi, Stefano;
Sobie, Eric A.

Publication type:

Article

Operant conditioning of stochastic chemical reaction networks.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010676

By:

Arredondo, David;
Lakin, Matthew R.

Publication type:

Article

Sleep prevents catastrophic forgetting in spiking neural networks by forming a joint synaptic weight representation.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010628

By:

Golden, Ryan;
Delanois, Jean Erik;
Sanda, Pavel;
Bazhenov, Maxim

Publication type:

Article

Inferring a spatial code of cell-cell interactions across a whole animal body.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010715

By:

Armingol, Erick;
Ghaddar, Abbas;
Joshi, Chintan J.;
Baghdassarian, Hratch;
Shamie, Isaac;
Chan, Jason;
Her, Hsuan-Lin;
Berhanu, Samuel;
Dar, Anushka;
Rodriguez-Armstrong, Fabiola;
Yang, Olivia;
O'Rourke, Eyleen J.;
Lewis, Nathan E.

Publication type:

Article

Soft disorder modulates the assembly path of protein complexes.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010713

By:

Seoane, Beatriz;
Carbone, Alessandra

Publication type:

Article

Computational analysis of 5-fluorouracil anti-tumor activity in colon cancer using a mechanistic pharmacokinetic/pharmacodynamic model.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010685

By:

Ma, Chenhui;
Almasan, Alex;
Gurkan-Cavusoglu, Evren

Publication type:

Article

Molecular source attribution.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010649

By:

Chao, Elisa;
Chato, Connor;
Vender, Reid;
Olabode, Abayomi S.;
Ferreira, Roux-Cil;
Poon, Art F. Y.

Publication type:

Article

Ten simple rules for funding scientific open source software.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010627

By:

Strasser, Carly;
Hertweck, Kate;
Greenberg, Josh;
Taraborelli, Dario;
Vu, Elizabeth

Publication type:

Article

A neurocomputational theory of action regulation predicts motor behavior in neurotypical individuals and patients with Parkinson's disease.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010111

By:

Zhong, Shan;
Choi, Jeong Woo;
Hashoush, Nadia G.;
Babayan, Diana;
Malekmohammadi, Mahsa;
Pouratian, Nader;
Christopoulos, Vassilios

Publication type:

Article

Brain connectivity meets reservoir computing.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010639

By:

Damicelli, Fabrizio;
Hilgetag, Claus C.;
Goulas, Alexandros

Publication type:

Article

Computationally efficient mechanism discovery for cell invasion with uncertainty quantification.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010599

By:

VandenHeuvel, Daniel J.;
Drovandi, Christopher;
Simpson, Matthew J.

Publication type:

Article

Correction: All<sup>2</sup>: A tool for selecting mosaic mutations from comprehensive multi-cell comparisons.

Published in:

2022

By:

Sarangi, Vivekananda;
Jang, Yeongjun;
Suvakov, Milovan;
Bae, Taejeong;
Fasching, Liana;
Sekar, Shobana;
Tomasini, Livia;
Mariani, Jessica;
Vaccarino, Flora M.;
Abyzov, Alexej

Publication type:

Correction Notice

Correction: A circuit model of auditory cortex.

Published in:

2022

By:

Park, Youngmin;
Geffen, Maria N.

Publication type:

Correction Notice

Brain-wide connectome inferences using functional connectivity MultiVariate Pattern Analyses (fc-MVPA).

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010634

By:

Nieto-Castanon, Alfonso

Publication type:

Article

Dosing time optimization of antihypertensive medications by including the circadian rhythm in pharmacokinetic-pharmacodynamic models.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010711

By:

Cortés-Ríos, Javiera;
Hermida, Ramón C.;
Rodriguez-Fernandez, Maria

Publication type:

Article

Statistical perspective on functional and causal neural connectomics: The Time-Aware PC algorithm.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010653

By:

Biswas, Rahul;
Shlizerman, Eli

Publication type:

Article

SyBLaRS: A web service for laying out, rendering and mining biological maps in SBGN, SBML and more.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010635

By:

Balci, Hasan;
Dogrusoz, Ugur;
Ozgul, Yusuf Ziya;
Atayev, Perman

Publication type:

Article

Adaptive multi-objective control explains how humans make lateral maneuvers while walking.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010035

By:

Desmet, David M.;
Cusumano, Joseph P.;
Dingwell, Jonathan B.

Publication type:

Article

Protein prediction models support widespread post-transcriptional regulation of protein abundance by interacting partners.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010702

By:

Srivastava, Himangi;
Lippincott, Michael J.;
Currie, Jordan;
Canfield, Robert;
Lam, Maggie P. Y.;
Lau, Edward

Publication type:

Article

BIPS—A code base for designing and coding of a Phage ImmunoPrecipitation Oligo Library.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010663

By:

Leviatan, Sigal;
Kalka, Iris N.;
Vogl, Thomas;
Klompas, Shelley;
Weinberger, Adina;
Segal, Eran

Publication type:

Article

Ten simple rules for developing visualization tools in genomics.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010622

By:

Durant, Eloi;
Rouard, Mathieu;
Ganko, Eric W.;
Muller, Cedric;
Cleary, Alan M.;
Farmer, Andrew D.;
Conte, Matthieu;
Sabot, Francois

Publication type:

Article

Reproducibility efforts as a teaching tool: A pilot study.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010615

By:

Karathanasis, Nestoras;
Hwang, Daniel;
Heng, Vibol;
Abhimannyu, Rimal;
Slogoff-Sevilla, Phillip;
Buchel, Gina;
Frisbie, Victoria;
Li, Peiyao;
Kryoneriti, Dafni;
Rigoutsos, Isidore

Publication type:

Article

AvP: A software package for automatic phylogenetic detection of candidate horizontal gene transfers.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010686

By:

Koutsovoulos, Georgios D.;
Granjeon Noriot, Solène;
Bailly-Bechet, Marc;
Danchin, Etienne G. J.;
Rancurel, Corinne

Publication type:

Article

OrganoID: A versatile deep learning platform for tracking and analysis of single-organoid dynamics.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010584

By:

Matthews, Jonathan M.;
Schuster, Brooke;
Kashaf, Sara Saheb;
Liu, Ping;
Ben-Yishay, Rakefet;
Ishay-Ronen, Dana;
Izumchenko, Evgeny;
Shen, Le;
Weber, Christopher R.;
Bielski, Margaret;
Kupfer, Sonia S.;
Bilgic, Mustafa;
Rzhetsky, Andrey;
Tay, Savaş

Publication type:

Article

Network topology metrics explaining enrichment of hybrid epithelial mesenchymal phenotypes in metastasis.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010687

By:

Rashid, Mubasher;
Hari, Kishore;
Thampi, John;
Santhosh, Nived Krishnan;
Jolly, Mohit Kumar

Publication type:

Article

A structural dynamics model for how CPEB3 binding to SUMO2 can regulate translational control in dendritic spines.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010657

By:

Gu, Xinyu;
Schafer, Nicholas P.;
Bueno, Carlos;
Lu, Wei;
Wolynes, Peter G.

Publication type:

Article

Correction: cytoNet: Spatiotemporal network analysis of cell communities.

Published in:: 2022
Publication type:: Correction Notice

Probabilistic program inference in network-based epidemiological simulations.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010591

By:

Smedemark-Margulies, Niklas;
Walters, Robin;
Zimmermann, Heiko;
Laird, Lucas;
van der Loo, Christian;
Kaushik, Neela;
Caceres, Rajmonda;
van de Meent, Jan-Willem

Publication type:

Article