Works matching IS 1553734X AND DT 2022 AND VI 18 AND IP 8

Results: 70

What is the nature of motor adaptation to dynamic perturbations?

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010470

By:

Moullet, Etienne;
Roby-Brami, Agnès;
Guigon, Emmanuel

Publication type:

Article

Reconstructing the course of the COVID-19 epidemic over 2020 for US states and counties: Results of a Bayesian evidence synthesis model.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010465

By:

Chitwood, Melanie H.;
Russi, Marcus;
Gunasekera, Kenneth;
Havumaki, Joshua;
Klaassen, Fayette;
Pitzer, Virginia E.;
Salomon, Joshua A.;
Swartwood, Nicole A.;
Warren, Joshua L.;
Weinberger, Daniel M.;
Cohen, Ted;
Menzies, Nicolas A.

Publication type:

Article

WhichTF is functionally important in your open chromatin data?

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010378

By:

Tanigawa, Yosuke;
Dyer, Ethan S.;
Bejerano, Gill

Publication type:

Article

A novel logical model of COVID-19 intracellular infection to support therapies development.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010443

By:

Piretto, Elena;
Selvaggio, Gianluca;
Bragantini, Damiano;
Domenici, Enrico;
Marchetti, Luca

Publication type:

Article

Mapping of promoter usage QTL using RNA-seq data reveals their contributions to complex traits.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010436

By:

Kubota, Naoto;
Suyama, Mikita

Publication type:

Article

Accounting for multiple imputation-induced variability for differential analysis in mass spectrometry-based label-free quantitative proteomics.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010420

By:

Chion, Marie;
Carapito, Christine;
Bertrand, Frédéric

Publication type:

Article

A multi-objective based clustering for inferring BCR clonal lineages from high-throughput B cell repertoire data.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010411

By:

Abdollahi, Nika;
Jeusset, Lucile;
De Septenville, Anne Langlois;
Ripoche, Hugues;
Davi, Frédéric;
Bernardes, Juliana Silva

Publication type:

Article

A simple model of the attentional blink and its modulation by mental training.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010398

By:

Amir, Nadav;
Tishby, Naftali;
Nelken, Israel

Publication type:

Article

Multiscale modelling of desquamation in the interfollicular epidermis.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010368

By:

Miller, Claire;
Crampin, Edmund;
Osborne, James M.

Publication type:

Article

Cross-fitted instrument: A blueprint for one-sample Mendelian randomization.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010268

By:

Denault, William R. P.;
Bohlin, Jon;
Page, Christian M.;
Burgess, Stephen;
Jugessur, Astanand

Publication type:

Article

RAFFT: Efficient prediction of RNA folding pathways using the fast Fourier transform.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010448

By:

Opuu, Vaitea;
Merleau, Nono S. C.;
Messow, Vincent;
Smerlak, Matteo

Publication type:

Article

Seasonal variation in SARS-CoV-2 transmission in temperate climates: A Bayesian modelling study in 143 European regions.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010435

By:

Gavenčiak, Tomáš;
Monrad, Joshua Teperowski;
Leech, Gavin;
Sharma, Mrinank;
Mindermann, Sören;
Bhatt, Samir;
Brauner, Jan;
Kulveit, Jan

Publication type:

Article

Integrative experimental/computational approach establishes active cellular protrusion as the primary driving force of phagocytic spreading by immune cells.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1009937

By:

Francis, Emmet A.;
Heinrich, Volkmar

Publication type:

Article

Combining biomarker and virus phylogenetic models improves HIV-1 epidemiological source identification.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1009741

By:

Lundgren, Erik;
Romero-Severson, Ethan;
Albert, Jan;
Leitner, Thomas

Publication type:

Article

Practical identifiability analysis of a mechanistic model for the time to distant metastatic relapse and its application to renal cell carcinoma.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010444

By:

Álvarez-Arenas, Arturo;
Souleyreau, Wilfried;
Emanuelli, Andrea;
Cooley, Lindsay S.;
Bernhard, Jean-Christophe;
Bikfalvi, Andreas;
Benzekry, Sebastien

Publication type:

Article

Ten simple rules for organizing a special session at a scientific conference.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010395

By:

Chicco, Davide;
Bourne, Philip E.

Publication type:

Article

Constructive connectomics: How neuronal axons get from here to there using gene-expression maps derived from their family trees.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010382

By:

Kerstjens, Stan;
Michel, Gabriela;
Douglas, Rodney J.

Publication type:

Article

Archetypal Analysis for population genetics.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010301

By:

Gimbernat-Mayol, Julia;
Dominguez Mantes, Albert;
Bustamante, Carlos D.;
Mas Montserrat, Daniel;
Ioannidis, Alexander G.

Publication type:

Article

Computer simulations of Template-Directed RNA Synthesis driven by temperature cycling in diverse sequence mixtures.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010458

By:

Chamanian, Pouyan;
Higgs, Paul G.

Publication type:

Article

VGsim: Scalable viral genealogy simulator for global pandemic.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010409

By:

Shchur, Vladimir;
Spirin, Vadim;
Sirotkin, Dmitry;
Burovski, Evgeni;
De Maio, Nicola;
Corbett-Detig, Russell

Publication type:

Article

Subunit promotion energies for channel opening in heterotetrameric olfactory CNG channels.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010376

By:

Schirmeyer, Jana;
Eick, Thomas;
Schulz, Eckhard;
Hummert, Sabine;
Sattler, Christian;
Schmauder, Ralf;
Benndorf, Klaus

Publication type:

Article

SPEACH_AF: Sampling protein ensembles and conformational heterogeneity with Alphafold2.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010483

By:

Stein, Richard A.;
Mchaourab, Hassane S.

Publication type:

Article

Inferring tumor-specific cancer dependencies through integrating ex vivo drug response assays and drug-protein profiling.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010438

By:

Batzilla, Alina;
Lu, Junyan;
Kivioja, Jarno;
Putzker, Kerstin;
Lewis, Joe;
Zenz, Thorsten;
Huber, Wolfgang

Publication type:

Article

Mathematical modeling of the molecular switch of TNFR1-mediated signaling pathways applying Petri net formalism and in silico knockout analysis.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010383

By:

Amstein, Leonie K.;
Ackermann, Jörg;
Hannig, Jennifer;
Đikić, Ivan;
Fulda, Simone;
Koch, Ina

Publication type:

Article

How growers make decisions impacts plant disease control.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010309

By:

Murray-Watson, Rachel E.;
Hamelin, Frédéric M.;
Cunniffe, Nik J.

Publication type:

Article

Different forms of superspreading lead to different outcomes: Heterogeneity in infectiousness and contact behavior relevant for the case of SARS-CoV-2.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1009980

By:

Kuylen, Elise J.;
Torneri, Andrea;
Willem, Lander;
Libin, Pieter J. K.;
Abrams, Steven;
Coletti, Pietro;
Franco, Nicolas;
Verelst, Frederik;
Beutels, Philippe;
Liesenborgs, Jori;
Hens, Niel

Publication type:

Article

Avoiding costly mistakes in groups: The evolution of error management in collective decision making.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010442

By:

Novaes Tump, Alan;
Wolf, Max;
Romanczuk, Pawel;
Kurvers, Ralf H. J. M.

Publication type:

Article

Recombination-aware phylogeographic inference using the structured coalescent with ancestral recombination.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010422

By:

Guo, Fangfang;
Carbone, Ignazio;
Rasmussen, David A.

Publication type:

Article

Mitochondrial mRNA localization is governed by translation kinetics and spatial transport.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010413

By:

Arceo, Ximena G.;
Koslover, Elena F.;
Zid, Brian M.;
Brown, Aidan I.

Publication type:

Article

Modeling age-specific incidence of colon cancer via niche competition.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010403

By:

Lange, Steffen;
Mogwitz, Richard;
Hünniger, Denis;
Voß-Böhme, Anja

Publication type:

Article

TreeKnit: Inferring ancestral reassortment graphs of influenza viruses.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010394

By:

Barrat-Charlaix, Pierre;
Vaughan, Timothy G.;
Neher, Richard A.

Publication type:

Article

Cattle transport network predicts endemic and epidemic foot-and-mouth disease risk on farms in Turkey.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010354

By:

Herrera-Diestra, José L.;
Tildesley, Michael;
Shea, Katriona;
Ferrari, Matthew J.

Publication type:

Article

Novel feature selection methods for construction of accurate epigenetic clocks.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1009938

By:

Li, Adam;
Mueller, Amber;
English, Brad;
Arena, Anthony;
Vera, Daniel;
Kane, Alice E.;
Sinclair, David A.

Publication type:

Article

DSCN: Double-target selection guided by CRISPR screening and network.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1009421

By:

Liu, Enze;
Wu, Xue;
Wang, Lei;
Huo, Yang;
Wu, Huanmei;
Li, Lang;
Cheng, Lijun

Publication type:

Article

Ten simple rules for a successful EU Marie Skłodowska-Curie Actions Postdoctoral (MSCA) fellowship application.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010371

By:

Baumert, Philipp;
Cenni, Francesco;
Antonkine, Mikhail L.

Publication type:

Article

Habitat loss exacerbates pathogen spread: An Agent-based model of avian influenza infection in migratory waterfowl.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1009577

By:

Yin, Shenglai;
Xu, Yanjie;
Xu, Mingshuai;
de Jong, Mart C. M.;
Huisman, Mees R. S.;
Contina, Andrea;
Prins, Herbert H. T.;
Huang, Zheng Y. X.;
de Boer, Willem F.

Publication type:

Article

Positively charged mineral surfaces promoted the accumulation of organic intermediates at the origin of metabolism.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010377

By:

Akbari, Amir;
Palsson, Bernhard O.

Publication type:

Article

Understanding the structure of cognitive noise.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010312

By:

Zhu, Jian-Qiao;
León-Villagrá, Pablo;
Chater, Nick;
Sanborn, Adam N.

Publication type:

Article

iPiDA-LTR: Identifying piwi-interacting RNA-disease associations based on Learning to Rank.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010404

By:

Zhang, Wenxiang;
Hou, Jialu;
Liu, Bin

Publication type:

Article

Characterizing the variation in chromosome structure ensembles in the context of the nuclear microenvironment.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010392

By:

Das, Priyojit;
Shen, Tongye;
McCord, Rachel Patton

Publication type:

Article

Consistent pattern of epidemic slowing across many geographies led to longer, flatter initial waves of the COVID-19 pandemic.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010375

By:

Ben-Nun, Michal;
Riley, Pete;
Turtle, James;
Riley, Steven

Publication type:

Article

Regimes and mechanisms of transient amplification in abstract and biological neural networks.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010365

By:

Christodoulou, Georgia;
Vogels, Tim P.;
Agnes, Everton J.

Publication type:

Article

Terminal heterocyst differentiation in the Anabaena patA mutant as a result of post-transcriptional modifications and molecular leakage.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010359

By:

Casanova-Ferrer, Pau;
Ares, Saúl;
Muñoz-García, Javier

Publication type:

Article

Biased belief priors versus biased belief updating: Differential correlates of depression and anxiety.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010176

By:

Gagne, Christopher;
Agai, Sharon;
Ramiro, Christian;
Dayan, Peter;
Bishop, Sonia

Publication type:

Article

De novo spatiotemporal modelling of cell-type signatures in the developmental human heart using graph convolutional neural networks.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010366

By:

Marco Salas, Sergio;
Yuan, Xiao;
Sylven, Christer;
Nilsson, Mats;
Wählby, Carolina;
Partel, Gabriele

Publication type:

Article

Brain signal predictions from multi-scale networks using a linearized framework.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010353

By:

Hagen, Espen;
Magnusson, Steinn H.;
Ness, Torbjørn V.;
Halnes, Geir;
Babu, Pooja N.;
Linssen, Charl;
Morrison, Abigail;
Einevoll, Gaute T.

Publication type:

Article

Deep learning prediction of chemical-induced dose-dependent and context-specific multiplex phenotype responses and its application to personalized alzheimer's disease drug repurposing.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010367

By:

Wu, You;
Liu, Qiao;
Qiu, Yue;
Xie, Lei

Publication type:

Article

Ten simple rules for reporting information on species interactions.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010362

By:

Kita, Cristina A.;
Florez-Montero, Guillermo;
Montoya-Bustamante, Sebastián;
Muylaert, Renata L.;
Zapata-Mesa, Natalya;
Mello, Marco A. R.

Publication type:

Article

Ten quick tips for biomarker discovery and validation analyses using machine learning.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010357

By:

Diaz-Uriarte, Ramon;
Gómez de Lope, Elisa;
Giugno, Rosalba;
Fröhlich, Holger;
Nazarov, Petr V.;
Nepomuceno-Chamorro, Isabel A.;
Rauschenberger, Armin;
Glaab, Enrico

Publication type:

Article

Nine quick tips for pathway enrichment analysis.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010348

By:

Chicco, Davide;
Agapito, Giuseppe

Publication type:

Article