Works matching IS 1553734X AND DT 2021 AND VI 17 AND IP 12

Results: 87

Unsupervised discovery of dynamic cell phenotypic states from transmitted light movies.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009626

By:

Nguyen, Phuc;
Chien, Sylvia;
Dai, Jin;
Monnat Jr, Raymond J.;
Becker, Pamela S.;
Kueh, Hao Yuan

Publication type:

Article

Epidemiological and ecological consequences of virus manipulation of host and vector in plant virus transmission.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009759

By:

Cunniffe, Nik J.;
Taylor, Nick P.;
Hamelin, Frédéric M.;
Jeger, Michael J.

Publication type:

Article

Realistic retinal modeling unravels the differential role of excitation and inhibition to starburst amacrine cells in direction selectivity.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009754

By:

Ezra-Tsur, Elishai;
Amsalem, Oren;
Ankri, Lea;
Patil, Pritish;
Segev, Idan;
Rivlin-Etzion, Michal

Publication type:

Article

When shared concept cells support associations: Theory of overlapping memory engrams.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009691

By:

Gastaldi, Chiara;
Schwalger, Tilo;
De Falco, Emanuela;
Quiroga, Rodrigo Quian;
Gerstner, Wulfram

Publication type:

Article

The automatic parameter-exploration with a machine-learning-like approach: Powering the evolutionary modeling on the origin of life.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009761

By:

Liang, Yuzhen;
Yu, Chunwu;
Ma, Wentao

Publication type:

Article

The quantitative basis for the redistribution of immobile bacterial lipoproteins to division septa.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009756

By:

Connolley, Lara;
Szczepaniak, Joanna;
Kleanthous, Colin;
Murray, Seán M.

Publication type:

Article

Motif-pattern dependence of biomolecular phase separation driven by specific interactions.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009748

By:

Weiner, Benjamin G.;
Pyo, Andrew G. T.;
Meir, Yigal;
Wingreen, Ned S.

Publication type:

Article

Modeling CRISPR gene drives for suppression of invasive rodents using a supervised machine learning framework.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009660

By:

Champer, Samuel E.;
Oakes, Nathan;
Sharma, Ronin;
García-Díaz, Pablo;
Champer, Jackson;
Messer, Philipp W.

Publication type:

Article

Dissociable influences of reward and punishment on adaptive cognitive control.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009737

By:

Leng, Xiamin;
Yee, Debbie;
Ritz, Harrison;
Shenhav, Amitai

Publication type:

Article

Modelling interference between vectors of non-persistently transmitted plant viruses to identify effective control strategies.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009727

By:

Zaffaroni, Marta;
Rimbaud, Loup;
Mailleret, Ludovic;
Cunniffe, Nik J.;
Bevacqua, Daniele

Publication type:

Article

A novel theoretical framework for simultaneous measurement of excitatory and inhibitory conductances.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009725

By:

Müller-Komorowska, Daniel;
Parabucki, Ana;
Elyasaf, Gal;
Katz, Yonatan;
Beck, Heinz;
Lampl, Ilan

Publication type:

Article

Spatially distributed infection increases viral load in a computational model of SARS-CoV-2 lung infection.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009735

By:

Moses, Melanie E.;
Hofmeyr, Steven;
Cannon, Judy L.;
Andrews, Akil;
Gridley, Rebekah;
Hinga, Monica;
Leyba, Kirtus;
Pribisova, Abigail;
Surjadidjaja, Vanessa;
Tasnim, Humayra;
Forrest, Stephanie

Publication type:

Article

Correction: Representation of foreseeable choice outcomes in orbitofrontal cortex triplet-wise interactions.

Published in:

2021

By:

Balaguer-Ballester, Emili;
Nogueira, Ramon;
Abolafia, Juan M.;
Moreno-Bote, Ruben;
Sanchez-Vives, Maria V.

Publication type:

Correction Notice

Measuring context dependency in birdsong using artificial neural networks.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009707

By:

Morita, Takashi;
Koda, Hiroki;
Okanoya, Kazuo;
Tachibana, Ryosuke O.

Publication type:

Article

Combination treatment optimization using a pan-cancer pathway model.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009689

By:

Schmucker, Robin;
Farina, Gabriele;
Faeder, James;
Fröhlich, Fabian;
Saglam, Ali Sinan;
Sandholm, Tuomas

Publication type:

Article

Asymmetric and transient properties of reciprocal activity of antagonists during the paw-shake response in the cat.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009677

By:

Parker, Jessica R.;
Klishko, Alexander N.;
Prilutsky, Boris I.;
Cymbalyuk, Gennady S.

Publication type:

Article

A systems genomics approach uncovers molecular associates of RSV severity.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009617

By:

McCall, Matthew N.;
Chu, Chin-Yi;
Wang, Lu;
Benoodt, Lauren;
Thakar, Juilee;
Corbett, Anthony;
Holden-Wiltse, Jeanne;
Slaunwhite, Christopher;
Grier, Alex;
Gill, Steven R.;
Falsey, Ann R.;
Topham, David J.;
Caserta, Mary T.;
Walsh, Edward E.;
Qiu, Xing;
Mariani, Thomas J.

Publication type:

Article

Correction: A prediction tool for plaque progression based on patient-specific multi-physical modeling.

Published in:

2021

By:

Pan, Jichao;
Cai, Yan;
Wang, Liang;
Maehara, Akiko;
Mintz, Gary S.;
Tang, Dalin;
Li, Zhiyong

Publication type:

Correction Notice

A data-informed mean-field approach to mapping of cortical parameter landscapes.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009718

By:

Xiao, Zhuo-Cheng;
Lin, Kevin K.;
Young, Lai-Sang

Publication type:

Article

Estimating the contribution of HIV-infected adults to household pneumococcal transmission in South Africa, 2016–2018: A hidden Markov modelling study.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009680

By:

Thindwa, Deus;
Wolter, Nicole;
Pinsent, Amy;
Carrim, Maimuna;
Ojal, John;
Tempia, Stefano;
Moyes, Jocelyn;
McMorrow, Meredith;
Kleynhans, Jackie;
Gottberg, Anne von;
French, Neil;
Cohen, Cheryl;
Flasche, Stefan

Publication type:

Article

Numerical approaches for the rapid analysis of prophylactic efficacy against HIV with arbitrary drug-dosing schemes.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009295

By:

Zhang, Lanxin;
Wang, Junyu;
von Kleist, Max

Publication type:

Article

A hybrid stochastic-deterministic approach to explore multiple infection and evolution in HIV.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009713

By:

Kreger, Jesse;
Komarova, Natalia L.;
Wodarz, Dominik

Publication type:

Article

Optimal immune specificity at the intersection of host life history and parasite epidemiology.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009714

By:

Downie, Alexander E.;
Mayer, Andreas;
Metcalf, C. Jessica E.;
Graham, Andrea L.

Publication type:

Article

SWIFT: A deep learning approach to prediction of hypoxemic events in critically-Ill patients using SpO<sub>2</sub> waveform prediction.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009712

By:

Annapragada, Akshaya V.;
Greenstein, Joseph L.;
Bose, Sanjukta N.;
Winters, Bradford D.;
Sarma, Sridevi V.;
Winslow, Raimond L.

Publication type:

Article

Stress generation, relaxation and size control in confined tumor growth.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009701

By:

Yan, Huaming;
Ramirez-Guerrero, Daniel;
Lowengrub, John;
Wu, Min

Publication type:

Article

Multiscale model for forecasting Sabin 2 vaccine virus household and community transmission.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009690

By:

Famulare, Michael;
Wong, Wesley;
Haque, Rashidul;
Platts-Mills, James A.;
Saha, Parimalendu;
Aziz, Asma B.;
Ahmed, Tahmina;
Islam, Md Ohedul;
Uddin, Md Jashim;
Bandyopadhyay, Ananda S.;
Yunus, Mohammed;
Zaman, Khalequ;
Taniuchi, Mami

Publication type:

Article

Conditional prediction of consecutive tumor evolution using cancer progression models: What genotype comes next?

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009055

By:

Diaz-Colunga, Juan;
Diaz-Uriarte, Ramon

Publication type:

Article

Correction: Extracellular loops of BtuB facilitate transport of vitamin B<sub>12</sub> through the outer membrane of E. coli.

Published in:

2021

By:

Pieńko, Tomasz;
Trylska, Joanna

Publication type:

Correction Notice

Correction: Modelling locust foraging: How and why food affects group formation.

Published in:

2021

By:

Georgiou, Fillipe;
Buhl, Jerome;
Green, J. E. F.;
Lamichhane, Bishnu;
Thamwattana, Ngamta

Publication type:

Correction Notice

Systematic evaluation of NIPT aneuploidy detection software tools with clinically validated NIPT samples.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009684

By:

Paluoja, Priit;
Teder, Hindrek;
Ardeshirdavani, Amin;
Bayindir, Baran;
Vermeesch, Joris;
Salumets, Andres;
Krjutškov, Kaarel;
Palta, Priit

Publication type:

Article

Internal state effects on behavioral shifts in freely behaving praying mantises (Tenodera sinensis).

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009618

By:

Pickard, Shanel C.;
Bertsch, David J.;
Le Garrec, Zoe;
Ritzmann, Roy E.;
Quinn, Roger D.;
Szczecinski, Nicholas S.

Publication type:

Article

Revealing mechanisms of infectious disease spread through empirical contact networks.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009604

By:

Sah, Pratha;
Otterstatter, Michael;
Leu, Stephan T.;
Leviyang, Sivan;
Bansal, Shweta

Publication type:

Article

A spatio-temporal model to reveal oscillator phenotypes in molecular clocks: Parameter estimation elucidates circadian gene transcription dynamics in single-cells.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009698

By:

Unosson, Måns;
Brancaccio, Marco;
Hastings, Michael;
Johansen, Adam M.;
Finkenstädt, Bärbel

Publication type:

Article

Preparing to move: Setting initial conditions to simplify interactions with complex objects.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009597

By:

Nayeem, Rashida;
Bazzi, Salah;
Sadeghi, Mohsen;
Hogan, Neville;
Sternad, Dagmar

Publication type:

Article

One-carbon metabolism during the menstrual cycle and pregnancy.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009708

By:

Kim, Ruby;
Nijhout, H. Frederik;
Reed, Michael C.

Publication type:

Article

Acoustic traits of bat-pollinated flowers compared to flowers of other pollination syndromes and their echo-based classification using convolutional neural networks.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009706

By:

Simon, Ralph;
Bakunowski, Karol;
Reyes-Vasques, Angel Eduardo;
Tschapka, Marco;
Knörnschild, Mirjam;
Steckel, Jan;
Stowell, Dan

Publication type:

Article

Subjective optimality in finite sequential decision-making.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009633

By:

Sin, Yeonju;
Seon, HeeYoung;
Shin, Yun Kyoung;
Kwon, Oh-Sang;
Chung, Dongil

Publication type:

Article

Modeling the onset of symptoms of COVID-19: Effects of SARS-CoV-2 variant.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009629

By:

Larsen, Joseph R.;
Martin, Margaret R.;
Martin, John D.;
Hicks, James B.;
Kuhn, Peter

Publication type:

Article

A proposed workflow for proactive virus surveillance and prediction of variants for vaccine design.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009624

By:

Baker, Jordan J.;
Mathy, Christopher J. P.;
Schaletzky, Julia

Publication type:

Article

Statistical tests for intra-tumour clonal co-occurrence and exclusivity.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009036

By:

Kuipers, Jack;
Moore, Ariane L.;
Jahn, Katharina;
Schraml, Peter;
Wang, Feng;
Morita, Kiyomi;
Futreal, P. Andrew;
Takahashi, Koichi;
Beisel, Christian;
Moch, Holger;
Beerenwinkel, Niko

Publication type:

Article

Extracting temporal relationships between weakly coupled peptidergic and motoneuronal signaling: Application to Drosophila ecdysis behavior.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1008933

By:

Piñeiro, Miguel;
Mena, Wilson;
Ewer, John;
Orio, Patricio

Publication type:

Article

How the value of the environment controls persistence in visual search.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009662

By:

Traner, Michael R.;
Bromberg-Martin, Ethan S.;
Monosov, Ilya E.

Publication type:

Article

Identifying proximal RNA interactions from cDNA-encoded crosslinks with ShapeJumper.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009632

By:

Christy, Thomas W.;
Giannetti, Catherine A.;
Laederach, Alain;
Weeks, Kevin M.

Publication type:

Article

Optimal vaccine allocation for COVID-19 in the Netherlands: A data-driven prioritization.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009697

By:

Miura, Fuminari;
Leung, Ka Yin;
Klinkenberg, Don;
Ainslie, Kylie E. C.;
Wallinga, Jacco

Publication type:

Article

Correction: Modeling and MEG evidence of early consonance processing in auditory cortex.

Published in:

2021

By:

Tabas, Alejandro;
Andermann, Martin;
Schuberth, Valeria;
Riedel, Helmut;
Balaguer-Ballester, Emili;
Rupp, André

Publication type:

Correction Notice

Multifunctional RNA-binding proteins influence mRNA abundance and translational efficiency of distinct sets of target genes.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009658

By:

Schneider-Lunitz, Valentin;
Ruiz-Orera, Jorge;
Hubner, Norbert;
van Heesch, Sebastiaan

Publication type:

Article

Correction: Expectancy-based rhythmic entrainment as continuous Bayesian inference.

Published in:

2021

By:

Cannon, Jonathan

Publication type:

Correction Notice

Epitope profiling using computational structural modelling demonstrated on coronavirus-binding antibodies.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009675

By:

Robinson, Sarah A.;
Raybould, Matthew I. J.;
Schneider, Constantin;
Wong, Wing Ki;
Marks, Claire;
Deane, Charlotte M.

Publication type:

Article

CoRE-ATAC: A deep learning model for the functional classification of regulatory elements from single cell and bulk ATAC-seq data.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009670

By:

Thibodeau, Asa;
Khetan, Shubham;
Eroglu, Alper;
Tewhey, Ryan;
Stitzel, Michael L.;
Ucar, Duygu

Publication type:

Article

Graphical integrity issues in open access publications: Detection and patterns of proportional ink violations.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009650

By:

Zhuang, Han;
Huang, Tzu-Yang;
Acuna, Daniel E.

Publication type:

Article