Works matching IS 1553734X AND DT 2021 AND VI 17 AND IP 9

Results: 101

Dynamic Electrode-to-Image (DETI) mapping reveals the human brain's spatiotemporal code of visual information.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009456

By:

Hansen, Bruce C.;
Greene, Michelle R.;
Field, David J.

Publication type:

Article

Heterodimer-heterotetramer formation mediates enhanced sensor activity in a biophysical model for BMP signaling.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009422

By:

Karim, M. Shahriar;
Madamanchi, Aasakiran;
Dutko, James A.;
Mullins, Mary C.;
Umulis, David M.

Publication type:

Article

The critical balance between dopamine D2 receptor and RGS for the sensitive detection of a transient decay in dopamine signal.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009364

By:

Urakubo, Hidetoshi;
Yagishita, Sho;
Kasai, Haruo;
Kubota, Yoshiyuki;
Ishii, Shin

Publication type:

Article

GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009444

By:

Tognon, Manuel;
Bonnici, Vincenzo;
Garrison, Erik;
Giugno, Rosalba;
Pinello, Luca

Publication type:

Article

Ten simple rules for choosing a PhD supervisor.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009330

By:

Jabre, Loay;
Bannon, Catherine;
McCain, J. Scott P.;
Eglit, Yana

Publication type:

Article

Transcriptomic profiling in canines and humans reveals cancer specific gene modules and biological mechanisms common to both species.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009450

By:

Tawa, Gregory J.;
Braisted, John;
Gerhold, David;
Grewal, Gurmit;
Mazcko, Christina;
Breen, Matthew;
Sittampalam, Gurusingham;
LeBlanc, Amy K.

Publication type:

Article

Ten simple rules for being a faculty advocate of first-year graduate students.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009379

By:

Janes, Kevin A.

Publication type:

Article

dGPredictor: Automated fragmentation method for metabolic reaction free energy prediction and de novo pathway design.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009448

By:

Wang, Lin;
Upadhyay, Vikas;
Maranas, Costas D.

Publication type:

Article

A model of head direction and landmark coding in complex environments.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009434

By:

Yan, Yijia;
Burgess, Neil;
Bicanski, Andrej

Publication type:

Article

High-integrity human intervention in ecosystems: Tracking self-organization modes.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009427

By:

Zelnik, Yuval R.;
Mau, Yair;
Shachak, Moshe;
Meron, Ehud

Publication type:

Article

Hybrid computational modeling demonstrates the utility of simulating complex cellular networks in type 1 diabetes.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009413

By:

Shi, Zhenzhen;
Li, Yang;
Jaberi-Douraki, Majid

Publication type:

Article

FunOrder: A robust and semi-automated method for the identification of essential biosynthetic genes through computational molecular co-evolution.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009372

By:

Vignolle, Gabriel A.;
Schaffer, Denise;
Zehetner, Leopold;
Mach, Robert L.;
Mach-Aigner, Astrid R.;
Derntl, Christian

Publication type:

Article

Meta-analysis of transcriptomic data reveals clusters of consistently deregulated gene and disease ontologies in Down syndrome.

Published in:

2021

By:

De Toma, Ilario;
Sierra, Cesar;
Dierssen, Mara

Publication type:

Literature Review

Ten simple rules for avoiding predatory publishing scams.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009377

By:

Leonard, Michelle;
Stapleton, Suzanne;
Collins, Perry;
Selfe, Terry Kit;
Cataldo, Tara

Publication type:

Article

Phenotypic-dependent variability and the emergence of tolerance in bacterial populations.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009417

By:

Camacho Mateu, José;
Sireci, Matteo;
Muñoz, Miguel A.

Publication type:

Article

A unified mechanism for innate and learned visual landmark guidance in the insect central complex.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009383

By:

Goulard, Roman;
Buehlmann, Cornelia;
Niven, Jeremy E.;
Graham, Paul;
Webb, Barbara

Publication type:

Article

XENet: Using a new graph convolution to accelerate the timeline for protein design on quantum computers.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009037

By:

Maguire, Jack B.;
Grattarola, Daniele;
Mulligan, Vikram Khipple;
Klyshko, Eugene;
Melo, Hans

Publication type:

Article

Drug-induced resistance evolution necessitates less aggressive treatment.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009418

By:

Kuosmanen, Teemu;
Cairns, Johannes;
Noble, Robert;
Beerenwinkel, Niko;
Mononen, Tommi;
Mustonen, Ville

Publication type:

Article

Optima TB: A tool to help optimally allocate tuberculosis spending.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009255

By:

Goscé, Lara;
Abou Jaoude, Gerard J.;
Kedziora, David J.;
Benedikt, Clemens;
Hussain, Azfar;
Jarvis, Sarah;
Skrahina, Alena;
Klimuk, Dzmitry;
Hurevich, Henadz;
Zhao, Feng;
Fraser-Hurt, Nicole;
Cheikh, Nejma;
Gorgens, Marelize;
Wilson, David J.;
Abeysuriya, Romesh;
Martin-Hughes, Rowan;
Kelly, Sherrie L.;
Roberts, Anna;
Stuart, Robyn M.;
Palmer, Tom

Publication type:

Article

Memes: A motif analysis environment in R using tools from the MEME Suite.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008991

By:

Nystrom, Spencer L.;
McKay, Daniel J.

Publication type:

Article

Computational analysis of GAL pathway pinpoints mechanisms underlying natural variation.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008691

By:

Hong, Jiayin;
Palme, Julius;
Hua, Bo;
Springer, Michael

Publication type:

Article

Mathematical model of a personalized neoantigen cancer vaccine and the human immune system.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009318

By:

Rodriguez Messan, Marisabel;
Yogurtcu, Osman N.;
McGill, Joseph R.;
Nukala, Ujwani;
Sauna, Zuben E.;
Yang, Hong

Publication type:

Article

No increased circular inference in adults with high levels of autistic traits or autism.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009006

By:

Chrysaitis, Nikitas Angeletos;
Jardri, Renaud;
Denève, Sophie;
Seriès, Peggy

Publication type:

Article

Local field potentials in a pre-motor region predict learned vocal sequences.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008100

By:

Brown II, Daril E.;
Chavez, Jairo I.;
Nguyen, Derek H.;
Kadwory, Adam;
Voytek, Bradley;
Arneodo, Ezequiel M.;
Gentner, Timothy Q.;
Gilja, Vikash

Publication type:

Article

Neighbor-enhanced diffusivity in dense, cohesive cell populations.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009447

By:

Lee, Hyun Gyu;
Lee, Kyoung J.

Publication type:

Article

Experimental and computational investigation of enzyme functional annotations uncovers misannotation in the EC 1.1.3.15 enzyme class.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009446

By:

Rembeza, Elzbieta;
Engqvist, Martin K. M.

Publication type:

Article

Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009345

By:

Zhao, Zhengqiao;
Woloszynek, Stephen;
Agbavor, Felix;
Mell, Joshua Chang;
Sokhansanj, Bahrad A.;
Rosen, Gail L.

Publication type:

Article

Membrane-binding mechanism of the EEA1 FYVE domain revealed by multi-scale molecular dynamics simulations.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008807

By:

Larsen, Andreas Haahr;
Tata, Lilya;
John, Laura H.;
Sansom, Mark S. P.

Publication type:

Article

A model of naturalistic decision making in preference tests.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009012

By:

Ksander, John;
Katz, Donald B.;
Miller, Paul

Publication type:

Article

Incorporating metadata in HIV transmission network reconstruction: A machine learning feasibility assessment.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009336

By:

Mazrouee, Sepideh;
Little, Susan J.;
Wertheim, Joel O.

Publication type:

Article

Levels of SARS-CoV-2 population exposure are considerably higher than suggested by seroprevalence surveys.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009436

By:

Chen, Siyu;
Flegg, Jennifer A.;
White, Lisa J.;
Aguas, Ricardo

Publication type:

Article

Partitioning variability in animal behavioral videos using semi-supervised variational autoencoders.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009439

By:

Whiteway, Matthew R.;
Biderman, Dan;
Friedman, Yoni;
Dipoppa, Mario;
Buchanan, E. Kelly;
Wu, Anqi;
Zhou, John;
Bonacchi, Niccolò;
Miska, Nathaniel J.;
Noel, Jean-Paul;
Rodriguez, Erica;
Schartner, Michael;
Socha, Karolina;
Urai, Anne E.;
Salzman, C. Daniel;
Cunningham, John P.;
Paninski, Liam

Publication type:

Article

Biomedical Data Commons (BMDC) prioritizes B-lymphocyte non-coding genetic variants in Type 1 Diabetes.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009382

By:

Piekos, Samantha N.;
Gaddam, Sadhana;
Bhardwaj, Pranav;
Radhakrishnan, Prashanth;
Guha, Ramanathan V.;
Oro, Anthony E.

Publication type:

Article

Emergent spatiotemporal population dynamics with cell-length control of synthetic microbial consortia.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009381

By:

Winkle, James J.;
Karamched, Bhargav R.;
Bennett, Matthew R.;
Ott, William;
Josić, Krešimir

Publication type:

Article

Hemodynamics-driven mathematical model of first and second heart sound generation.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009361

By:

Shahmohammadi, Mehrdad;
Luo, Hongxing;
Westphal, Philip;
Cornelussen, Richard N.;
Prinzen, Frits W.;
Delhaas, Tammo

Publication type:

Article

Acetylcholine-gated current translates wake neuronal firing rate information into a spike timing-based code in Non-REM sleep, stabilizing neural network dynamics during memory consolidation.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009424

By:

Skilling, Quinton M.;
Eniwaye, Bolaji;
Clawson, Brittany C.;
Shaver, James;
Ognjanovski, Nicolette;
Aton, Sara J.;
Zochowski, Michal

Publication type:

Article

Hierarchy and control of ageing-related methylation networks.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009327

By:

Palla, Gergely;
Pollner, Péter;
Börcsök, Judit;
Major, András;
Molnár, Béla;
Csabai, István

Publication type:

Article

Transcriptomic entropy benchmarks stem cell-derived cardiomyocyte maturation against endogenous tissue at single cell level.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009305

By:

Kannan, Suraj;
Farid, Michael;
Lin, Brian L.;
Miyamoto, Matthew;
Kwon, Chulan

Publication type:

Article

Ten simple rules to make your computing more environmentally sustainable.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009324

By:

Lannelongue, Loïc;
Grealey, Jason;
Bateman, Alex;
Inouye, Michael

Publication type:

Article

Differences in olfactory bulb mitral cell spiking with ortho- and retronasal stimulation revealed by data-driven models.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009169

By:

Craft, Michelle F.;
Barreiro, Andrea K.;
Gautam, Shree Hari;
Shew, Woodrow L.;
Ly, Cheng

Publication type:

Article

Inactivation mode of sodium channels defines the different maximal firing rates of conventional versus atypical midbrain dopamine neurons.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009371

By:

Knowlton, Christopher J.;
Ziouziou, Tabea Ines;
Hammer, Niklas;
Roeper, Jochen;
Canavier, Carmen C.

Publication type:

Article

Genetic dissection of complex traits using hierarchical biological knowledge.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009373

By:

Tanaka, Hidenori;
Kreisberg, Jason F.;
Ideker, Trey

Publication type:

Article

Adaptation supports short-term memory in a visual change detection task.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009246

By:

Hu, Brian;
Garrett, Marina E.;
Groblewski, Peter A.;
Ollerenshaw, Douglas R.;
Shang, Jiaqi;
Roll, Kate;
Manavi, Sahar;
Koch, Christof;
Olsen, Shawn R.;
Mihalas, Stefan

Publication type:

Article

Envelope reconstruction of speech and music highlights stronger tracking of speech at low frequencies.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009358

By:

Zuk, Nathaniel J.;
Murphy, Jeremy W.;
Reilly, Richard B.;
Lalor, Edmund C.

Publication type:

Article

Uncertainty quantification and sensitivity analysis of COVID-19 exit strategies in an individual-based transmission model.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009355

By:

Gugole, Federica;
Coffeng, Luc E.;
Edeling, Wouter;
Sanderse, Benjamin;
de Vlas, Sake J.;
Crommelin, Daan

Publication type:

Article

STDP and the distribution of preferred phases in the whisker system.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009353

By:

Sherf, Nimrod;
Shamir, Maoz

Publication type:

Article

Dynamic modelling of the PI3K/MTOR signalling network uncovers biphasic dependence of mTORC1 activity on the mTORC2 subunit SIN1.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008513

By:

Ghomlaghi, Milad;
Yang, Guang;
Shin, Sungyoung;
James, David E.;
Nguyen, Lan K.

Publication type:

Article

Reconstructing contact network structure and cross-immunity patterns from multiple infection histories.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009375

By:

Selinger, Christian;
Alizon, Samuel

Publication type:

Article

ISOTOPE: ISOform-guided prediction of epiTOPEs in cancer.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009411

By:

Trincado, Juan L.;
Reixachs-Solé, Marina;
Pérez-Granado, Judith;
Fugmann, Tim;
Sanz, Ferran;
Yokota, Jun;
Eyras, Eduardo

Publication type:

Article

Integration, coincidence detection and resonance in networks of spiking neurons expressing Gamma oscillations and asynchronous states.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009416

By:

Susin, Eduarda;
Destexhe, Alain

Publication type:

Article