Works matching IS 1553734X AND DT 2021 AND VI 17 AND IP 1

Results: 84

Estimating the time-varying reproduction number of COVID-19 with a state-space method.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008679

By:

Koyama, Shinsuke;
Horie, Taiki;
Shinomoto, Shigeru

Publication type:

Article

A sensory integration account for time perception.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008668

By:

Toso, Alessandro;
Fassihi, Arash;
Paz, Luciano;
Pulecchi, Francesca;
Diamond, Mathew E.

Publication type:

Article

Modeling invasion patterns in the glioblastoma battlefield.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008632

By:

Conte, Martina;
Casas-Tintò, Sergio;
Soler, Juan

Publication type:

Article

Assessing the potential impact of transmission during prolonged viral shedding on the effect of lockdown relaxation on COVID-19.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008609

By:

Tepekule, Burcu;
Hauser, Anthony;
Kachalov, Viacheslav N.;
Andresen, Sara;
Scheier, Thomas;
Schreiber, Peter W.;
Günthard, Huldrych F.;
Kouyos, Roger D.

Publication type:

Article

CTD: An information-theoretic algorithm to interpret sets of metabolomic and transcriptomic perturbations in the context of graphical models.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008550

By:

Thistlethwaite, Lillian R.;
Petrosyan, Varduhi;
Li, Xiqi;
Miller, Marcus J.;
Elsea, Sarah H.;
Milosavljevic, Aleksandar

Publication type:

Article

Quantifying epidemiological drivers of gambiense human African Trypanosomiasis across the Democratic Republic of Congo.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008532

By:

Crump, Ronald E.;
Huang, Ching-I;
Knock, Edward S.;
Spencer, Simon E. F.;
Brown, Paul E.;
Mwamba Miaka, Erick;
Shampa, Chansy;
Keeling, Matt J.;
Rock, Kat S.

Publication type:

Article

Identifying the drivers of multidrug-resistant Klebsiella pneumoniae at a European level.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008446

By:

Kachalov, Viacheslav N.;
Nguyen, Huyen;
Balakrishna, Suraj;
Salazar-Vizcaya, Luisa;
Sommerstein, Rami;
Kuster, Stefan P.;
Hauser, Anthony;
Abel zur Wiesch, Pia;
Klein, Eili;
Kouyos, Roger D.

Publication type:

Article

Causal network inference from gene transcriptional time-series response to glucocorticoids.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008223

By:

Lu, Jonathan;
Dumitrascu, Bianca;
McDowell, Ian C.;
Jo, Brian;
Barrera, Alejandro;
Hong, Linda K.;
Leichter, Sarah M.;
Reddy, Timothy E.;
Engelhardt, Barbara E.

Publication type:

Article

HippoUnit: A software tool for the automated testing and systematic comparison of detailed models of hippocampal neurons based on electrophysiological data.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008114

By:

Sáray, Sára;
Rössert, Christian A.;
Appukuttan, Shailesh;
Migliore, Rosanna;
Vitale, Paola;
Lupascu, Carmen A.;
Bologna, Luca L.;
Van Geit, Werner;
Romani, Armando;
Davison, Andrew P.;
Muller, Eilif;
Freund, Tamás F.;
Káli, Szabolcs

Publication type:

Article

ProMod3—A versatile homology modelling toolbox.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008667

By:

Studer, Gabriel;
Tauriello, Gerardo;
Bienert, Stefan;
Biasini, Marco;
Johner, Niklaus;
Schwede, Torsten

Publication type:

Article

Voxelized simulation of cerebral oxygen perfusion elucidates hypoxia in aged mouse cortex.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008584

By:

Hartung, Grant;
Badr, Shoale;
Moeini, Mohammad;
Lesage, Frédéric;
Kleinfeld, David;
Alaraj, Ali;
Linninger, Andreas

Publication type:

Article

Online analysis of microendoscopic 1-photon calcium imaging data streams.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008565

By:

Friedrich, Johannes;
Giovannucci, Andrea;
Pnevmatikakis, Eftychios A.

Publication type:

Article

Predicting synchronous firing of large neural populations from sequential recordings.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008501

By:

Sorochynskyi, Oleksandr;
Deny, Stéphane;
Marre, Olivier;
Ferrari, Ulisse

Publication type:

Article

Graph neural fields: A framework for spatiotemporal dynamical models on the human connectome.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008310

By:

Aqil, Marco;
Atasoy, Selen;
Kringelbach, Morten L.;
Hindriks, Rikkert

Publication type:

Article

Dissecting the regulatory roles of ORM proteins in the sphingolipid pathway of plants.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008284

By:

Alsiyabi, Adil;
Solis, Ariadna Gonzalez;
Cahoon, Edgar B.;
Saha, Rajib

Publication type:

Article

MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kinetics.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008208

By:

Haiman, Zachary B.;
Zielinski, Daniel C.;
Koike, Yuko;
Yurkovich, James T.;
Palsson, Bernhard O.

Publication type:

Article

Coordinating cell polarization and morphogenesis through mechanical feedback.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007971

By:

Banavar, Samhita P.;
Trogdon, Michael;
Drawert, Brian;
Yi, Tau-Mu;
Petzold, Linda R.;
Campàs, Otger

Publication type:

Article

Personalized logical models to investigate cancer response to BRAF treatments in melanomas and colorectal cancers.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007900

By:

Béal, Jonas;
Pantolini, Lorenzo;
Noël, Vincent;
Barillot, Emmanuel;
Calzone, Laurence

Publication type:

Article

One is not enough: On the effects of reference genome for the mapping and subsequent analyses of short-reads.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008678

By:

Valiente-Mullor, Carlos;
Beamud, Beatriz;
Ansari, Iván;
Francés-Cuesta, Carlos;
García-González, Neris;
Mejía, Lorena;
Ruiz-Hueso, Paula;
González-Candelas, Fernando

Publication type:

Article

Sensor-based localization of epidemic sources on human mobility networks.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008545

By:

Li, Jun;
Manitz, Juliane;
Bertuzzo, Enrico;
Kolaczyk, Eric D.

Publication type:

Article

PEtab—Interoperable specification of parameter estimation problems in systems biology.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008646

By:

Schmiester, Leonard;
Schälte, Yannik;
Bergmann, Frank T.;
Camba, Tacio;
Dudkin, Erika;
Egert, Janine;
Fröhlich, Fabian;
Fuhrmann, Lara;
Hauber, Adrian L.;
Kemmer, Svenja;
Lakrisenko, Polina;
Loos, Carolin;
Merkt, Simon;
Müller, Wolfgang;
Pathirana, Dilan;
Raimúndez, Elba;
Refisch, Lukas;
Rosenblatt, Marcus;
Stapor, Paul L.;
Städter, Philipp

Publication type:

Article

A reconstruction theory of relational schema induction.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008641

By:

Phillips, Steven

Publication type:

Article

Catalytic promiscuity in the RNA World may have aided the evolution of prebiotic metabolism.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008634

By:

Vörös, Dániel;
Könnyű, Balázs;
Czárán, Tamás

Publication type:

Article

Sparse deep predictive coding captures contour integration capabilities of the early visual system.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008629

By:

Boutin, Victor;
Franciosini, Angelo;
Chavane, Frederic;
Ruffier, Franck;
Perrinet, Laurent

Publication type:

Article

mbkmeans: Fast clustering for single cell data using mini-batch k-means.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008625

By:

Hicks, Stephanie C.;
Liu, Ruoxi;
Ni, Yuwei;
Purdom, Elizabeth;
Risso, Davide

Publication type:

Article

Dysregulation of excitatory neural firing replicates physiological and functional changes in aging visual cortex.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008620

By:

Talyansky, Seth;
Brinkman, Braden A. W.

Publication type:

Article

Physical constraints on early blastomere packings.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007994

By:

Giammona, James;
Campàs, Otger

Publication type:

Article

Mitochondrial depolarization promotes calcium alternans: Mechanistic insights from a ventricular myocyte model.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008624

By:

Pandey, Vikas;
Xie, Lai-Hua;
Qu, Zhilin;
Song, Zhen

Publication type:

Article

Pasa: Proteomic analysis of serum antibodies web server.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008607

By:

Avram, Oren;
Kigel, Aya;
Vaisman-Mentesh, Anna;
Kligsberg, Sharon;
Rosenstein, Shai;
Dror, Yael;
Pupko, Tal;
Wine, Yariv

Publication type:

Article

Active probing to highlight approaching transitions to ictal states in coupled neural mass models.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008377

By:

Carvalho, Vinícius Rezende;
Moraes, Márcio Flávio Dutra;
Cash, Sydney S.;
Mendes, Eduardo Mazoni Andrade Marçal

Publication type:

Article

A regularized functional regression model enabling transcriptome-wide dosage-dependent association study of cancer drug response.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008066

By:

Koukouli, Evanthia;
Wang, Dennis;
Dondelinger, Frank;
Park, Juhyun

Publication type:

Article

Physicochemical and metabolic constraints for thermodynamics-based stoichiometric modelling under mesophilic growth conditions.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007694

By:

Tomi-Andrino, Claudio;
Norman, Rupert;
Millat, Thomas;
Soucaille, Philippe;
Winzer, Klaus;
Barrett, David A.;
King, John;
Kim, Dong-Hyun

Publication type:

Article

Robust point-process Granger causality analysis in presence of exogenous temporal modulations and trial-by-trial variability in spike trains.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007675

By:

Casile, Antonino;
Faghih, Rose T.;
Brown, Emery N.

Publication type:

Article

Modeling multi-sensory feedback control of zebrafish in a flow.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008644

By:

Burbano-L., Daniel A.;
Porfiri, Maurizio

Publication type:

Article

The impact of interactions on invasion and colonization resistance in microbial communities.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008643

By:

Kurkjian, Helen M.;
Akbari, M. Javad;
Momeni, Babak

Publication type:

Article

Predictions of COVID-19 dynamics in the UK: Short-term forecasting and analysis of potential exit strategies.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008619

By:

Keeling, Matt J.;
Hill, Edward M.;
Gorsich, Erin E.;
Penman, Bridget;
Guyver-Fletcher, Glen;
Holmes, Alex;
Leng, Trystan;
McKimm, Hector;
Tamborrino, Massimiliano;
Dyson, Louise;
Tildesley, Michael J.

Publication type:

Article

DEER-PREdict: Software for efficient calculation of spin-labeling EPR and NMR data from conformational ensembles.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008551

By:

Tesei, Giulio;
Martins, João M.;
Kunze, Micha B. A.;
Wang, Yong;
Crehuet, Ramon;
Lindorff-Larsen, Kresten

Publication type:

Article

Contrasting mechanisms for hidden hearing loss: Synaptopathy vs myelin defects.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008499

By:

Budak, Maral;
Grosh, Karl;
Sasmal, Aritra;
Corfas, Gabriel;
Zochowski, Michal;
Booth, Victoria

Publication type:

Article

Post-lockdown abatement of COVID-19 by fast periodic switching.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008604

By:

Bin, Michelangelo;
Cheung, Peter Y. K.;
Crisostomi, Emanuele;
Ferraro, Pietro;
Lhachemi, Hugo;
Murray-Smith, Roderick;
Myant, Connor;
Parisini, Thomas;
Shorten, Robert;
Stein, Sebastian;
Stone, Lewi

Publication type:

Article

Modelling thalamocortical circuitry shows that visually induced LTP changes laminar connectivity in human visual cortex.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008414

By:

Sumner, Rachael L.;
Spriggs, Meg J.;
Shaw, Alexander D.

Publication type:

Article

Friendly-rivalry solution to the iterated n-person public-goods game.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008217

By:

Murase, Yohsuke;
Baek, Seung Ki

Publication type:

Article

Aggregative cycles evolve as a solution to conflicts in social investment.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008617

By:

Miele, Leonardo;
De Monte, Silvia

Publication type:

Article

Estimating and interpreting secondary attack risk: Binomial considered biased.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008601

By:

Sharker, Yushuf;
Kenah, Eben

Publication type:

Article

Real-time resolution of short-read assembly graph using ONT long reads.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008586

By:

Nguyen, Son Hoang;
Cao, Minh Duc;
Coin, Lachlan

Publication type:

Article

Zika virus dynamics: Effects of inoculum dose, the innate immune response and viral interference.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008564

By:

Best, Katharine;
Barouch, Dan H.;
Guedj, Jeremie;
Ribeiro, Ruy M.;
Perelson, Alan S.

Publication type:

Article

Disease-driven reduction in human mobility influences human-mosquito contacts and dengue transmission dynamics.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008627

By:

Schaber, Kathryn L.;
Perkins, T. Alex;
Lloyd, Alun L.;
Waller, Lance A.;
Kitron, Uriel;
Paz-Soldan, Valerie A.;
Elder, John P.;
Rothman, Alan L.;
Civitello, David J.;
Elson, William H.;
Morrison, Amy C.;
Scott, Thomas W.;
Vazquez-Prokopec, Gonzalo M.

Publication type:

Article

Modeling the structure of the frameshift-stimulatory pseudoknot in SARS-CoV-2 reveals multiple possible conformers.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008603

By:

Omar, Sara Ibrahim;
Zhao, Meng;
Sekar, Rohith Vedhthaanth;
Moghadam, Sahar Arbabi;
Tuszynski, Jack A.;
Woodside, Michael T.

Publication type:

Article

A theory of memory for binary sequences: Evidence for a mental compression algorithm in humans.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008598

By:

Planton, Samuel;
van Kerkoerle, Timo;
Abbih, Leïla;
Maheu, Maxime;
Meyniel, Florent;
Sigman, Mariano;
Wang, Liping;
Figueira, Santiago;
Romano, Sergio;
Dehaene, Stanislas

Publication type:

Article

Bacterial fitness landscapes stratify based on proteome allocation associated with discrete aero-types.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008596

By:

Chen, Ke;
Anand, Amitesh;
Olson, Connor;
Sandberg, Troy E.;
Gao, Ye;
Mih, Nathan;
Palsson, Bernhard O.

Publication type:

Article

Four different mechanisms for switching cell polarity.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008587

By:

Tostevin, Filipe;
Wigbers, Manon;
Søgaard-Andersen, Lotte;
Gerland, Ulrich

Publication type:

Article