Works matching IS 1553734X AND DT 2020 AND VI 16 AND IP 5

Results: 62

Phenotypic delay in the evolution of bacterial antibiotic resistance: Mechanistic models and their implications.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007930

By:

Carballo-Pacheco, Martín;
Nicholson, Michael D.;
Lilja, Elin E.;
Allen, Rosalind J.;
Waclaw, Bartlomiej

Publication type:

Article

Compositional Lotka-Volterra describes microbial dynamics in the simplex.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007917

By:

Joseph, Tyler A.;
Shenhav, Liat;
Xavier, Joao B.;
Halperin, Eran;
Pe'er, Itsik

Publication type:

Article

Ranbow: A fast and accurate method for polyploid haplotype reconstruction.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007843

By:

Moeinzadeh, M-Hossein;
Yang, Jun;
Muzychenko, Evgeny;
Gallone, Giuseppe;
Heller, David;
Reinert, Knut;
Haas, Stefan;
Vingron, Martin

Publication type:

Article

Early warning signals in motion inference.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007821

By:

Hart, Yuval;
Vaziri-Pashkam, Maryam;
Mahadevan, L.

Publication type:

Article

In silico analysis of hypoxia activated prodrugs in combination with anti angiogenic therapy through nanocell delivery.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007926

By:

Meaney, Cameron;
Rhebergen, Sander;
Kohandel, Mohammad

Publication type:

Article

Microbial communities display alternative stable states in a fluctuating environment.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007934

By:

Abreu, Clare I.;
Andersen Woltz, Vilhelm L.;
Friedman, Jonathan;
Gore, Jeff

Publication type:

Article

Chloride dynamics alter the input-output properties of neurons.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007932

By:

Currin, Christopher B.;
Trevelyan, Andrew J.;
Akerman, Colin J.;
Raimondo, Joseph V.

Publication type:

Article

Restriction of S-adenosylmethionine conformational freedom by knotted protein binding sites.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007904

By:

Perlinska, Agata P.;
Stasiulewicz, Adam;
Nawrocka, Ewa K.;
Kazimierczuk, Krzysztof;
Setny, Piotr;
Sulkowska, Joanna I.

Publication type:

Article

Predicting host taxonomic information from viral genomes: A comparison of feature representations.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007894

By:

Young, Francesca;
Rogers, Simon;
Robertson, David L.

Publication type:

Article

Non-uniform distribution of myosin-mediated forces governs red blood cell membrane curvature through tension modulation.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007890

By:

Alimohamadi, Haleh;
Smith, Alyson S.;
Nowak, Roberta B.;
Fowler, Velia M.;
Rangamani, Padmini

Publication type:

Article

Balance between asymmetry and abundance in multi-domain DNA-binding proteins may regulate the kinetics of their binding to DNA.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007867

By:

Pal, Arumay;
Levy, Yaakov

Publication type:

Article

Sequence-based prediction of protein binding mode landscapes.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007864

By:

Horvath, Attila;
Miskei, Marton;
Ambrus, Viktor;
Vendruscolo, Michele;
Fuxreiter, Monika

Publication type:

Article

Modeling the temporal network dynamics of neuronal cultures.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007834

By:

Cadena, Jose;
Sales, Ana Paula;
Lam, Doris;
Enright, Heather A.;
Wheeler, Elizabeth K.;
Fischer, Nicholas O.

Publication type:

Article

Benchmarking predictions of MHC class I restricted T cell epitopes in a comprehensively studied model system.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007757

By:

Paul, Sinu;
Croft, Nathan P.;
Purcell, Anthony W.;
Tscharke, David C.;
Sette, Alessandro;
Nielsen, Morten;
Peters, Bjoern

Publication type:

Article

A unifying model for the propagation of prion proteins in yeast brings insight into the [PSI<sup>+</sup>] prion.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007647

By:

Lemarre, Paul;
Pujo-Menjouet, Laurent;
Sindi, Suzanne S.

Publication type:

Article

Modeling the effects of motivation on choice and learning in the basal ganglia.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007465

By:

van Swieten, Maaike M. H.;
Bogacz, Rafal

Publication type:

Article

Modelling the dynamics of tuberculosis lesions in a virtual lung: Role of the bronchial tree in endogenous reinfection.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007772

By:

Català, Martí;
Bechini, Jordi;
Tenesa, Montserrat;
Pérez, Ricardo;
Moya, Mariano;
Vilaplana, Cristina;
Valls, Joaquim;
Alonso, Sergio;
López, Daniel;
Cardona, Pere-Joan;
Prats, Clara

Publication type:

Article

GCNCDA: A new method for predicting circRNA-disease associations based on Graph Convolutional Network Algorithm.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007568

By:

Wang, Lei;
You, Zhu-Hong;
Li, Yang-Ming;
Zheng, Kai;
Huang, Yu-An

Publication type:

Article

A computational model tracks whole-lung Mycobacterium tuberculosis infection and predicts factors that inhibit dissemination.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007280

By:

Wessler, Timothy;
Joslyn, Louis R.;
Borish, H. Jacob;
Gideon, Hannah P.;
Flynn, JoAnne L.;
Kirschner, Denise E.;
Linderman, Jennifer J.

Publication type:

Article

Improving reproducibility in computational biology research.

Published in:

2020

By:

Papin, Jason A.;
Mac Gabhann, Feilim;
Sauro, Herbert M.;
Nickerson, David;
Rampadarath, Anand

Publication type:

Editorial

Dynamical network analysis reveals key microRNAs in progressive stages of lung cancer.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007793

By:

Kong, Chao;
Yao, Yu-Xiang;
Bing, Zhi-Tong;
Guo, Bing-Hui;
Huang, Liang;
Huang, Zi-Gang;
Lai, Ying-Cheng

Publication type:

Article

Bayesian regression explains how human participants handle parameter uncertainty.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007886

By:

Jegminat, Jannes;
Jastrzębowska, Maya A.;
Pachai, Matthew V.;
Herzog, Michael H.;
Pfister, Jean-Pascal

Publication type:

Article

Estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate Bayesian computation.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007878

By:

Varghese, Abhishek;
Drovandi, Christopher;
Mira, Antonietta;
Mengersen, Kerrie

Publication type:

Article

iCDA-CGR: Identification of CircRNA-Disease Associations based on Chaos Game Representation.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007872

By:

Zheng, Kai;
You, Zhu-Hong;
Li, Jian-Qiang;
Wang, Lei;
Guo, Zhen-Hao;
Huang, Yu-An

Publication type:

Article

Large scale analyses of genotype-phenotype relationships of glycine decarboxylase mutations and neurological disease severity.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007871

By:

Farris, Joseph;
Calhoun, Barbara;
Alam, Suhail;
Lee, Shaun;
Haldar, Kasturi

Publication type:

Article

Learning clinical networks from medical records based on information estimates in mixed-type data.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007866

By:

Cabeli, Vincent;
Verny, Louis;
Sella, Nadir;
Uguzzoni, Guido;
Verny, Marc;
Isambert, Hervé

Publication type:

Article

Stimulus-choice (mis)alignment in primate area MT.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007614

By:

Zhao, Yuan;
Yates, Jacob L.;
Levi, Aaron J.;
Huk, Alexander C.;
Park, Il Memming

Publication type:

Article

The Affective Ising Model: A computational account of human affect dynamics.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007860

By:

Loossens, Tim;
Mestdagh, Merijn;
Dejonckheere, Egon;
Kuppens, Peter;
Tuerlinckx, Francis;
Verdonck, Stijn

Publication type:

Article

Complex interactions can create persistent fluctuations in high-diversity ecosystems.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007827

By:

Roy, Felix;
Barbier, Matthieu;
Biroli, Giulio;
Bunin, Guy

Publication type:

Article

Mutation severity spectrum of rare alleles in the human genome is predictive of disease type.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007775

By:

Pei, Jimin;
Kinch, Lisa N.;
Otwinowski, Zbyszek;
Grishin, Nick V.

Publication type:

Article

Ten simple rules for designing learning experiences that involve enhancing computational biology Wikipedia articles.

Published in:

2020

By:

Kilpatrick, Alastair M.;
Anjum, Audra;
Welch, Lonnie

Publication type:

Editorial

Shape-preserving elastic solid models of macromolecules.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007855

By:

Song, Guang

Publication type:

Article

Differentiation of Cytopathic Effects (CPE) induced by influenza virus infection using deep Convolutional Neural Networks (CNN).

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007883

By:

Wang, Ting-En;
Chao, Tai-Ling;
Tsai, Hsin-Tsuen;
Lin, Pi-Han;
Tsai, Yen-Lung;
Chang, Sui-Yuan

Publication type:

Article

Towards a data-driven characterization of behavioral changes induced by the seasonal flu.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007879

By:

Gozzi, Nicolò;
Perrotta, Daniela;
Paolotti, Daniela;
Perra, Nicola

Publication type:

Article

Accelerating prediction of chemical shift of protein structures on GPUs: Using OpenACC.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007877

By:

Wright, Eric;
Ferrato, Mauricio;
Bryer, Alexander J.;
Searles, Robert;
Perilla, Juan R.;
Chandrasekaran, Sunita

Publication type:

Article

StanDep: Capturing transcriptomic variability improves context-specific metabolic models.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007764

By:

Joshi, Chintan J.;
Schinn, Song-Min;
Richelle, Anne;
Shamie, Isaac;
O'Rourke, Eyleen J.;
Lewis, Nathan E.

Publication type:

Article

A systematic machine learning and data type comparison yields metagenomic predictors of infant age, sex, breastfeeding, antibiotic usage, country of origin, and delivery type.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007895

By:

Le Goallec, Alan;
Tierney, Braden T.;
Luber, Jacob M.;
Cofer, Evan M.;
Kostic, Aleksandar D.;
Patel, Chirag J.

Publication type:

Article

Calibration of individual-based models to epidemiological data: A systematic review.

Published in:

2020

By:

Hazelbag, C. Marijn;
Dushoff, Jonathan;
Dominic, Emanuel M.;
Mthombothi, Zinhle E.;
Delva, Wim

Publication type:

Literature Review

Standard multiscale entropy reflects neural dynamics at mismatched temporal scales: What's signal irregularity got to do with it?

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007885

By:

Kosciessa, Julian Q.;
Kloosterman, Niels A.;
Garrett, Douglas D.

Publication type:

Article

PenDA, a rank-based method for personalized differential analysis: Application to lung cancer.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007869

By:

Richard, Magali;
Decamps, Clémentine;
Chuffart, Florent;
Brambilla, Elisabeth;
Rousseaux, Sophie;
Khochbin, Saadi;
Jost, Daniel

Publication type:

Article

Scale free topology as an effective feedback system.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007825

By:

Rivkind, Alexander;
Schreier, Hallel;
Brenner, Naama;
Barak, Omri

Publication type:

Article

Mechanistic modeling of light-induced chemotactic infiltration of bacteria into leaf stomata.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007841

By:

Ranjbaran, Mohsen;
Solhtalab, Mina;
Datta, Ashim K.

Publication type:

Article

Autonomous emergence of connectivity assemblies via spike triplet interactions.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007835

By:

Montangie, Lisandro;
Miehl, Christoph;
Gjorgjieva, Julijana

Publication type:

Article

Dynamic metabolic adaptation can promote species coexistence in competitive communities.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007896

By:

Pacciani-Mori, Leonardo;
Giometto, Andrea;
Suweis, Samir;
Maritan, Amos

Publication type:

Article

Randomly connected networks generate emergent selectivity and predict decoding properties of large populations of neurons.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007875

By:

Sederberg, Audrey;
Nemenman, Ilya

Publication type:

Article

Single nucleotide polymorphisms affect RNA-protein interactions at a distance through modulation of RNA secondary structures.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007852

By:

Shatoff, Elan;
Bundschuh, Ralf

Publication type:

Article

Ten Simple Rules for a successful remote postdoc.

Published in:

2020

By:

Burgio, Kevin R.;
MacKenzie, Caitlin McDonough;
Borrelle, Stephanie B.;
Ernest, S. K. Morgan;
Gill, Jacquelyn L.;
Ingeman, Kurt E.;
Teffer, Amy;
White, Ethan P.

Publication type:

Editorial

Ten simple rules to run a successful BioHackathon.

Published in:

2020

By:

Garcia, Leyla;
Antezana, Erick;
Garcia, Alexander;
Bolton, Evan;
Jimenez, Rafael;
Prins, Pjotr;
Banda, Juan M.;
Katayama, Toshiaki

Publication type:

Editorial

Ten simple rules for running a successful women-in-STEM organization on an academic campus.

Published in:

2020

By:

Rupert, Deborah D.;
Nowlan, Alexandra C.;
Tam, Oliver H.;
Gale Hammell, Molly

Publication type:

Editorial

Ad hoc efforts for advancing data science education.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007695

By:

DeMasi, Orianna;
Paxton, Alexandra;
Koy, Kevin

Publication type:

Article