Works matching IS 1553734X AND DT 2020 AND VI 16 AND IP 4

Results: 85

Tracheal branching in ants is area-decreasing, violating a central assumption of network transport models.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007853

By:

Aitkenhead, Ian J.;
Duffy, Grant A.;
Devendran, Citsabehsan;
Kearney, Michael R.;
Neild, Adrian;
Chown, Steven L.

Publication type:

Article

Information integration and collective motility in phototactic cyanobacteria.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007807

By:

Menon, Shakti N.;
Varuni, P.;
Menon, Gautam I.

Publication type:

Article

Insight into the protein solubility driving forces with neural attention.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007722

By:

Raimondi, Daniele;
Orlando, Gabriele;
Fariselli, Piero;
Moreau, Yves

Publication type:

Article

Inferring a simple mechanism for alpha-blocking by fitting a neural population model to EEG spectra.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007662

By:

Hartoyo, Agus;
Cadusch, Peter J.;
Liley, David T. J.;
Hicks, Damien G.

Publication type:

Article

Inferring the immune response from repertoire sequencing.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007873

By:

Puelma Touzel, Maximilian;
Walczak, Aleksandra M.;
Mora, Thierry

Publication type:

Article

Medusa: Software to build and analyze ensembles of genome-scale metabolic network reconstructions.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007847

By:

Medlock, Gregory L.;
Moutinho, Thomas J.;
Papin, Jason A.

Publication type:

Article

An electrodiffusive, ion conserving Pinsky-Rinzel model with homeostatic mechanisms.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007661

By:

Sætra, Marte J.;
Einevoll, Gaute T.;
Halnes, Geir

Publication type:

Article

Predicting cell lineages using autoencoders and optimal transport.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007828

By:

Yang, Karren Dai;
Damodaran, Karthik;
Venkatachalapathy, Saradha;
Soylemezoglu, Ali C.;
Shivashankar, G. V.;
Uhler, Caroline

Publication type:

Article

Efficient and flexible representation of higher-dimensional cognitive variables with grid cells.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007796

By:

Klukas, Mirko;
Lewis, Marcus;
Fiete, Ila

Publication type:

Article

A three-dimensional phase-field model for multiscale modeling of thrombus biomechanics in blood vessels.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007709

By:

Zheng, Xiaoning;
Yazdani, Alireza;
Li, He;
Humphrey, Jay D.;
Karniadakis, George E.

Publication type:

Article

Combining molecular dynamics simulations with small-angle X-ray and neutron scattering data to study multi-domain proteins in solution.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007870

By:

Larsen, Andreas Haahr;
Wang, Yong;
Bottaro, Sandro;
Grudinin, Sergei;
Arleth, Lise;
Lindorff-Larsen, Kresten

Publication type:

Article

Critical role of deadenylation in regulating poly(A) rhythms and circadian gene expression.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007842

By:

Yao, Xiangyu;
Kojima, Shihoko;
Chen, Jing

Publication type:

Article

Automated analysis of immunosequencing datasets reveals novel immunoglobulin D genes across diverse species.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007837

By:

Bhardwaj, Vinnu;
Franceschetti, Massimo;
Rao, Ramesh;
Pevzner, Pavel A.;
Safonova, Yana

Publication type:

Article

Decentralized control of insect walking: A simple neural network explains a wide range of behavioral and neurophysiological results.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007804

By:

Schilling, Malte;
Cruse, Holk

Publication type:

Article

Scedar: A scalable Python package for single-cell RNA-seq exploratory data analysis.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007794

By:

Zhang, Yuanchao;
Kim, Man S.;
Reichenberger, Erin R.;
Stear, Ben;
Taylor, Deanne M.

Publication type:

Article

ASAP-SML: An antibody sequence analysis pipeline using statistical testing and machine learning.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007779

By:

Li, Xinmeng;
Van Deventer, James A.;
Hassoun, Soha

Publication type:

Article

Dimensionality, information and learning in prefrontal cortex.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007514

By:

Bartolo, Ramon;
Saunders, Richard C.;
Mitz, Andrew R.;
Averbeck, Bruno B.

Publication type:

Article

LMSM: A modular approach for identifying lncRNA related miRNA sponge modules in breast cancer.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007851

By:

Zhang, Junpeng;
Xu, Taosheng;
Liu, Lin;
Zhang, Wu;
Zhao, Chunwen;
Li, Sijing;
Li, Jiuyong;
Rao, Nini;
Le, Thuc Duy

Publication type:

Article

Biophysically grounded mean-field models of neural populations under electrical stimulation.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007822

By:

Cakan, Caglar;
Obermayer, Klaus

Publication type:

Article

Learning action-oriented models through active inference.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007805

By:

Tschantz, Alexander;
Seth, Anil K.;
Buckley, Christopher L.

Publication type:

Article

Telling ecological networks apart by their structure: An environment-dependent approach.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007787

By:

Song, Chuliang;
Saavedra, Serguei

Publication type:

Article

BioConceptVec: Creating and evaluating literature-based biomedical concept embeddings on a large scale.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007617

By:

Chen, Qingyu;
Lee, Kyubum;
Yan, Shankai;
Kim, Sun;
Wei, Chih-Hsuan;
Lu, Zhiyong

Publication type:

Article

Compounds without borders: A mechanism for quantifying complex odors and responses to scent-pollution in bumblebees.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007765

By:

Sprayberry, Jordanna D. H.

Publication type:

Article

Vector bionomics and vectorial capacity as emergent properties of mosquito behaviors and ecology.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007446

By:

Wu, Sean L.;
Sánchez C., Héctor M.;
Henry, John M.;
Citron, Daniel T.;
Zhang, Qian;
Compton, Kelly;
Liang, Biyonka;
Verma, Amit;
Cummings, Derek A. T.;
Le Menach, Arnaud;
Scott, Thomas W.;
Wilson, Anne L.;
Lindsay, Steven W.;
Moyes, Catherine L.;
Hancock, Penny A.;
Russell, Tanya L.;
Burkot, Thomas R.;
Marshall, John M.;
Kiware, Samson;
Reiner, Robert C.

Publication type:

Article

Accounting for red blood cell accessibility reveals distinct invasion strategies in Plasmodium falciparum strains.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007702

By:

Cai, Francisco;
DeSimone, Tiffany M.;
Hansen, Elsa;
Jennings, Cameron V.;
Bei, Amy K.;
Ahouidi, Ambroise D.;
Mboup, Souleymane;
Duraisingh, Manoj T.;
Buckee, Caroline O.

Publication type:

Article

Structural and molecular insight into the pH-induced low-permeability of the voltage-gated potassium channel Kv1.2 through dewetting of the water cavity.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007405

By:

Lee, Juhwan;
Kang, Mooseok;
Kim, Sangyeol;
Chang, Iksoo

Publication type:

Article

Flux-based hierarchical organization of Escherichia coli's metabolic network.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007832

By:

Robaina-Estévez, Semidán;
Nikoloski, Zoran

Publication type:

Article

Methodological challenges in translational drug response modeling in cancer: A systematic analysis with FORESEE.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007803

By:

Schätzle, Lisa-Katrin;
Hadizadeh Esfahani, Ali;
Schuppert, Andreas

Publication type:

Article

Expression of quasi-equivalence and capsid dimorphism in the Hepadnaviridae.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007782

By:

Wu, Weimin;
Watts, Norman R.;
Cheng, Naiqian;
Huang, Rick;
Steven, Alasdair C.;
Wingfield, Paul T.

Publication type:

Article

Optimizing the deployment of ultra-low volume and indoor residual spraying for dengue outbreak response.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007743

By:

Cavany, Sean M.;
España, Guido;
Lloyd, Alun L.;
Waller, Lance A.;
Kitron, Uriel;
Astete, Helvio;
Elson, William H.;
Vazquez-Prokopec, Gonzalo M.;
Scott, Thomas W.;
Morrison, Amy C.;
Reiner Jr., Robert C.;
Perkins, T. Alex

Publication type:

Article

The drift diffusion model as the choice rule in inter-temporal and risky choice: A case study in medial orbitofrontal cortex lesion patients and controls.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007615

By:

Peters, Jan;
D'Esposito, Mark

Publication type:

Article

Low-rate firing limit for neurons with axon, soma and dendrites driven by spatially distributed stochastic synapses.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007175

By:

Gowers, Robert P.;
Timofeeva, Yulia;
Richardson, Magnus J. E.

Publication type:

Article

High-dimensional mediation analysis in survival models.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007768

By:

Luo, Chengwen;
Fa, Botao;
Yan, Yuting;
Wang, Yang;
Zhou, Yiwang;
Zhang, Yue;
Yu, Zhangsheng

Publication type:

Article

Striatal network modeling in Huntington's Disease.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007648

By:

Ponzi, Adam;
Barton, Scott J.;
Bunner, Kendra D.;
Rangel-Barajas, Claudia;
Zhang, Emily S.;
Miller, Benjamin R.;
Rebec, George V.;
Kozloski, James

Publication type:

Article

Insights into adenosine A<sub>2A</sub> receptor activation through cooperative modulation of agonist and allosteric lipid interactions.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007818

By:

Bruzzese, Agustín;
Dalton, James A. R.;
Giraldo, Jesús

Publication type:

Article

Unveiling dynamic metabolic signatures in human induced pluripotent and neural stem cells.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007780

By:

Vasconcelos e Sá, João;
Simão, Daniel;
Terrasso, Ana P.;
Silva, Marta M.;
Brito, Catarina;
Isidro, Inês A.;
Alves, Paula M.;
Carrondo, Manuel J. T.

Publication type:

Article

Ten simple rules for innovative dissemination of research.

Published in:

2020

By:

Ross-Hellauer, Tony;
Tennant, Jonathan P.;
Banelytė, Viltė;
Gorogh, Edit;
Luzi, Daniela;
Kraker, Peter;
Pisacane, Lucio;
Ruggieri, Roberta;
Sifacaki, Electra;
Vignoli, Michela

Publication type:

Editorial

Transcriptome-guided parsimonious flux analysis improves predictions with metabolic networks in complex environments.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007099

By:

Jenior, Matthew L.;
Moutinho, Thomas J.;
Dougherty, Bonnie V.;
Papin, Jason A.

Publication type:

Article

Dysregulated biodynamics in metabolic attractor systems precede the emergence of amyotrophic lateral sclerosis.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007773

By:

Curtin, Paul;
Austin, Christine;
Curtin, Austen;
Gennings, Chris;
Figueroa-Romero, Claudia;
Mikhail, Kristen A.;
Botero, Tatiana M.;
Goutman, Stephen A.;
Feldman, Eva L.;
Arora, Manish

Publication type:

Article

DOT: Gene-set analysis by combining decorrelated association statistics.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007819

By:

Vsevolozhskaya, Olga A.;
Shi, Min;
Hu, Fengjiao;
Zaykin, Dmitri V.

Publication type:

Article

ScalaFlux: A scalable approach to quantify fluxes in metabolic subnetworks.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007799

By:

Millard, Pierre;
Schmitt, Uwe;
Kiefer, Patrick;
Vorholt, Julia A.;
Heux, Stéphanie;
Portais, Jean-Charles

Publication type:

Article

A molecular odorant transduction model and the complexity of spatio-temporal encoding in the Drosophila antenna.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007751

By:

Lazar, Aurel A.;
Yeh, Chung-Heng

Publication type:

Article

Improving the coverage of credible sets in Bayesian genetic fine-mapping.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007829

By:

Hutchinson, Anna;
Watson, Hope;
Wallace, Chris

Publication type:

Article

Enhanced production of heterologous proteins by a synthetic microbial community: Conditions and trade-offs.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007795

By:

Mauri, Marco;
Gouzé, Jean-Luc;
de Jong, Hidde;
Cinquemani, Eugenio

Publication type:

Article

Localized semi-nonnegative matrix factorization (LocaNMF) of widefield calcium imaging data.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007791

By:

Saxena, Shreya;
Kinsella, Ian;
Musall, Simon;
Kim, Sharon H.;
Meszaros, Jozsef;
Thibodeaux, David N.;
Kim, Carla;
Cunningham, John;
Hillman, Elizabeth M. C.;
Churchland, Anne;
Paninski, Liam

Publication type:

Article

Generalizing to generalize: Humans flexibly switch between compositional and conjunctive structures during reinforcement learning.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007720

By:

Franklin, Nicholas T.;
Frank, Michael J.

Publication type:

Article

A mathematical model describing the localization and spread of influenza A virus infection within the human respiratory tract.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007705

By:

Quirouette, Christian;
Younis, Nada P.;
Reddy, Micaela B.;
Beauchemin, Catherine A. A.

Publication type:

Article

DeLTA: Automated cell segmentation, tracking, and lineage reconstruction using deep learning.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007673

By:

Lugagne, Jean-Baptiste;
Lin, Haonan;
Dunlop, Mary J.

Publication type:

Article

DRAMS: A tool to detect and re-align mixed-up samples for integrative studies of multi-omics data.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007522

By:

Jiang, Yi;
Giase, Gina;
Grennan, Kay;
Shieh, Annie W.;
Xia, Yan;
Han, Lide;
Wang, Quan;
Wei, Qiang;
Chen, Rui;
Liu, Sihan;
White, Kevin P.;
Chen, Chao;
Li, Bingshan;
Liu, Chunyu

Publication type:

Article

Humans adapt their anticipatory eye movements to the volatility of visual motion properties.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007438

By:

Pasture, Chloé;
Montagnini, Anna;
Perrinet, Laurent Udo

Publication type:

Article