Works matching IS 1553734X AND DT 2020 AND VI 16 AND IP 1

Results: 38

Heterogeneity coordinates bacterial multi-gene expression in single cells.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007643

By:

Han, Yichao;
Zhang, Fuzhong

Publication type:

Article

XPRESSyourself: Enhancing, standardizing, and automating ribosome profiling computational analyses yields improved insight into data.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007625

By:

Berg, Jordan A.;
Belyeu, Jonathan R.;
Morgan, Jeffrey T.;
Ouyang, Yeyun;
Bott, Alex J.;
Quinlan, Aaron R.;
Gertz, Jason;
Rutter, Jared

Publication type:

Article

Recurrent interactions can explain the variance in single trial responses.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007591

By:

Kotekal, Subhodh;
MacLean, Jason N.

Publication type:

Article

Incremental data integration for tracking genotype-disease associations.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007586

By:

Konopka, Tomasz;
Smedley, Damian

Publication type:

Article

Elementary Growth Modes provide a molecular description of cellular self-fabrication.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007559

By:

de Groot, Daan H.;
Hulshof, Josephus;
Teusink, Bas;
Bruggeman, Frank J.;
Planqué, Robert

Publication type:

Article

Atypical structural tendencies among low-complexity domains in the protein data bank proteome.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007487

By:

Cascarina, Sean M.;
Elder, Mikaela R.;
Ross, Eric D.

Publication type:

Article

Nucleosome positioning sequence patterns as packing or regulatory.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007365

By:

Pranckeviciene, Erinija;
Hosid, Sergey;
Liang, Nathan;
Ioshikhes, Ilya

Publication type:

Article

Optimizing circadian drug infusion schedules towards personalized cancer chronotherapy.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007218

By:

Hill, Roger J. W.;
Innominato, Pasquale F.;
Lévi, Francis;
Ballesta, Annabelle

Publication type:

Article

Notch signaling and taxis mechanims regulate early stage angiogenesis: A mathematical and computational model.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1006919

By:

Vega, Rocío;
Carretero, Manuel;
Travasso, Rui D. M.;
Bonilla, Luis L.

Publication type:

Article

ORSO (Online Resource for Social Omics): A data-driven social network connecting scientists to genomics datasets.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007571

By:

Lavender, Christopher A.;
Shapiro, Andrew J.;
Day, Frank S.;
Fargo, David C.

Publication type:

Article

A system for tracking whisker kinematics and whisker shape in three dimensions.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007402

By:

Petersen, Rasmus S.;
Colins Rodriguez, Andrea;
Evans, Mathew H.;
Campagner, Dario;
Loft, Michaela S. E.

Publication type:

Article

An educational guide for nanopore sequencing in the classroom.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007314

By:

Salazar, Alex N.;
Nobrega, Franklin L.;
Anyansi, Christine;
Aparicio-Maldonado, Cristian;
Costa, Ana Rita;
Haagsma, Anna C.;
Hiralal, Anwar;
Mahfouz, Ahmed;
McKenzie, Rebecca E.;
van Rossum, Teunke;
Brouns, Stan J. J.;
Abeel, Thomas

Publication type:

Article

Tissue-guided LASSO for prediction of clinical drug response using preclinical samples.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007607

By:

Huang, Edward W.;
Bhope, Ameya;
Lim, Jing;
Sinha, Saurabh;
Emad, Amin

Publication type:

Article

Learning spatiotemporal signals using a recurrent spiking network that discretizes time.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007606

By:

Maes, Amadeus;
Barahona, Mauricio;
Clopath, Claudia

Publication type:

Article

Collaboration leads to cooperation on sparse networks.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007557

By:

Angus, Simon D.;
Newton, Jonathan

Publication type:

Article

Bioinformatics analysis of whole slide images reveals significant neighborhood preferences of tumor cells in Hodgkin lymphoma.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007516

By:

Hannig, Jennifer;
Schäfer, Hendrik;
Ackermann, Jörg;
Hebel, Marie;
Schäfer, Tim;
Döring, Claudia;
Hartmann, Sylvia;
Hansmann, Martin-Leo;
Koch, Ina

Publication type:

Article

Between-tumor and within-tumor heterogeneity in invasive potential.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007464

By:

Padmanaban, Veena;
Tsehay, Yohannes;
Cheung, Kevin J.;
Ewald, Andrew J.;
Bader, Joel S.

Publication type:

Article

Computational optimization of associative learning experiments.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007593

By:

Melinscak, Filip;
Bach, Dominik R.

Publication type:

Article

Transient amplifiers of selection and reducers of fixation for death-Birth updating on graphs.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007529

By:

Allen, Benjamin;
Sample, Christine;
Jencks, Robert;
Withers, James;
Steinhagen, Patricia;
Brizuela, Lori;
Kolodny, Joshua;
Parke, Darren;
Lippner, Gabor;
Dementieva, Yulia A.

Publication type:

Article

Interpreting neural decoding models using grouped model reliance.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007148

By:

Valentin, Simon;
Harkotte, Maximilian;
Popov, Tzvetan

Publication type:

Article

Computational simulation of the reactive oxygen species and redox network in the regulation of chloroplast metabolism.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007102

By:

Gerken, Melanie;
Kakorin, Sergej;
Chibani, Kamel;
Dietz, Karl-Josef

Publication type:

Article

Limits on amplifiers of natural selection under death-Birth updating.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007494

By:

Tkadlec, Josef;
Pavlogiannis, Andreas;
Chatterjee, Krishnendu;
Nowak, Martin A.

Publication type:

Article

A new method for inferring timetrees from temporally sampled molecular sequences.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007046

By:

Miura, Sayaka;
Tamura, Koichiro;
Tao, Qiqing;
Huuki, Louise A.;
Kosakovsky Pond, Sergei L.;
Priest, Jessica;
Deng, Jiamin;
Kumar, Sudhir

Publication type:

Article

Developmental trajectory of Caenorhabditis elegans nervous system governs its structural organization.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. N.PAG, doi. 10.1371/journal.pcbi.1007602

By:

Pathak, Anand;
Chatterjee, Nivedita;
Sinha, Sitabhra

Publication type:

Article

Eco-evolutionary agriculture: Host-pathogen dynamics in crop rotations.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007546

By:

Bargués-Ribera, Maria;
Gokhale, Chaitanya S.

Publication type:

Article

A single reaction-diffusion equation for the multifarious eruptions of urticaria.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007590

By:

Seirin-Lee, Sungrim;
Yanase, Yuhki;
Takahagi, Shunsuke;
Hide, Michihiro

Publication type:

Article

BrainIAK tutorials: User-friendly learning materials for advanced fMRI analysis.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007549

By:

Kumar, Manoj;
Ellis, Cameron T.;
Lu, Qihong;
Zhang, Hejia;
Capotă, Mihai;
Willke, Theodore L.;
Ramadge, Peter J.;
Turk-Browne, Nicholas B.;
Norman, Kenneth A.

Publication type:

Article

The Dynamic Shift Detector: An algorithm to identify changes in parameter values governing populations.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007542

By:

Bahlai, Christie A.;
Zipkin, Elise F.

Publication type:

Article

DetEdit: A graphical user interface for annotating and editing events detected in long-term acoustic monitoring data.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007598

By:

Solsona-Berga, Alba;
Frasier, Kaitlin E.;
Baumann-Pickering, Simone;
Wiggins, Sean M.;
Hildebrand, John A.

Publication type:

Article

VAMPr: VAriant Mapping and Prediction of antibiotic resistance via explainable features and machine learning.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007511

By:

Kim, Jiwoong;
Greenberg, David E.;
Pifer, Reed;
Jiang, Shuang;
Xiao, Guanghua;
Shelburne, Samuel A.;
Koh, Andrew;
Xie, Yang;
Zhan, Xiaowei

Publication type:

Article

The role of actin protrusion dynamics in cell migration through a degradable viscoelastic extracellular matrix: Insights from a computational model.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007250

By:

Heck, Tommy;
Vargas, Diego A.;
Smeets, Bart;
Ramon, Herman;
Van Liedekerke, Paul;
Van Oosterwyck, Hans

Publication type:

Article

Dynamic distribution decomposition for single-cell snapshot time series identifies subpopulations and trajectories during iPSC reprogramming.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007491

By:

Taylor-King, Jake P.;
Riseth, Asbjørn N.;
Macnair, Will;
Claassen, Manfred

Publication type:

Article

Adaptive landscape flattening allows the design of both enzyme: Substrate binding and catalytic power.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007600

By:

Opuu, Vaitea;
Nigro, Giuliano;
Gaillard, Thomas;
Schmitt, Emmanuelle;
Mechulam, Yves;
Simonson, Thomas

Publication type:

Article

Emergence and suppression of cooperation by action visibility in transparent games.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007588

By:

Unakafov, Anton M.;
Schultze, Thomas;
Gail, Alexander;
Moeller, Sebastian;
Kagan, Igor;
Eule, Stephan;
Wolf, Fred

Publication type:

Article

Learning from animals: How to Navigate Complex Terrains.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007452

By:

Zhu, Henghui;
Liu, Hao;
Ataei, Armin;
Munk, Yonatan;
Daniel, Thomas;
Paschalidis, Ioannis Ch.

Publication type:

Article

The origin of biological homochirality along with the origin of life.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007592

By:

Chen, Yong;
Ma, Wentao

Publication type:

Article

Emergence of social inequality in the spatial harvesting of renewable public goods.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007483

By:

Joshi, Jaideep;
Brännström, Åke;
Dieckmann, Ulf

Publication type:

Article

Increasing growth rate slows adaptation when genotypes compete for diffusing resources.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007585

By:

Chacón, Jeremy M.;
Shaw, Allison K.;
Harcombe, William R.

Publication type:

Article