Works matching IS 1553734X AND DT 2020 AND VI 16 AND IP 2

Results: 64

Flexibility and intrinsic disorder are conserved features of hepatitis C virus E2 glycoprotein.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007710

By:

Stejskal, Lenka;
Lees, William D.;
Moss, David S.;
Palor, Machaela;
Bingham, Richard J.;
Shepherd, Adrian J.;
Grove, Joe

Publication type:

Article

Human decision making anticipates future performance in motor learning.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007632

By:

Moskowitz, Joshua B.;
Gale, Daniel J.;
Gallivan, Jason P.;
Wolpert, Daniel M.;
Flanagan, J. Randall

Publication type:

Article

Stochastic optimal open-loop control as a theory of force and impedance planning via muscle co-contraction.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007414

By:

Berret, Bastien;
Jean, Frédéric

Publication type:

Article

Doubting what you already know: Uncertainty regarding state transitions is associated with obsessive compulsive symptoms.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007634

By:

Fradkin, Isaac;
Ludwig, Casimir;
Eldar, Eran;
Huppert, Jonathan D.

Publication type:

Article

Individualized genetic network analysis reveals new therapeutic vulnerabilities in 6,700 cancer genomes.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007701

By:

Liu, Chuang;
Zhao, Junfei;
Lu, Weiqiang;
Dai, Yao;
Hockings, Jennifer;
Zhou, Yadi;
Nussinov, Ruth;
Eng, Charis;
Cheng, Feixiong

Publication type:

Article

From cells to tissue: How cell scale heterogeneity impacts glioblastoma growth and treatment response.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007672

By:

Gallaher, Jill A.;
Massey, Susan C.;
Hawkins-Daarud, Andrea;
Noticewala, Sonal S.;
Rockne, Russell C.;
Johnston, Sandra K.;
Gonzalez-Cuyar, Luis;
Juliano, Joseph;
Gil, Orlando;
Swanson, Kristin R.;
Canoll, Peter;
Anderson, Alexander R. A.

Publication type:

Article

In silico investigation of the mechanisms underlying atrial fibrillation due to impaired Pitx2.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007678

By:

Bai, Jieyun;
Lo, Andy;
Gladding, Patrick A.;
Stiles, Martin K.;
Fedorov, Vadim V.;
Zhao, Jichao

Publication type:

Article

Tximeta: Reference sequence checksums for provenance identification in RNA-seq.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007664

By:

Love, Michael I.;
Soneson, Charlotte;
Hickey, Peter F.;
Johnson, Lisa K.;
Pierce, N. Tessa;
Shepherd, Lori;
Morgan, Martin;
Patro, Rob

Publication type:

Article

Reprogramming of macrophages employing gene regulatory and metabolic network models.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007657

By:

Hörhold, Franziska;
Eisel, David;
Oswald, Marcus;
Kolte, Amol;
Röll, Daniela;
Osen, Wolfram;
Eichmüller, Stefan B.;
König, Rainer

Publication type:

Article

Realistic assumptions about spatial locations and clustering of premises matter for models of foot-and-mouth disease spread in the United States.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007641

By:

Sellman, Stefan;
Tildesley, Michael J.;
Burdett, Christopher L.;
Miller, Ryan S.;
Hallman, Clayton;
Webb, Colleen T.;
Wennergren, Uno;
Portacci, Katie;
Lindström, Tom

Publication type:

Article

Structural diversity of B-cell receptor repertoires along the B-cell differentiation axis in humans and mice.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007636

By:

Kovaltsuk, Aleksandr;
Raybould, Matthew I. J.;
Wong, Wing Ki;
Marks, Claire;
Kelm, Sebastian;
Snowden, James;
Trück, Johannes;
Deane, Charlotte M.

Publication type:

Article

Dynamic integration of forward planning and heuristic preferences during multiple goal pursuit.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007685

By:

Ott, Florian;
Marković, Dimitrije;
Strobel, Alexander;
Kiebel, Stefan J.

Publication type:

Article

Non-ohmic tissue conduction in cardiac electrophysiology: Upscaling the non-linear voltage-dependent conductance of gap junctions.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007232

By:

Hurtado, Daniel E.;
Jilberto, Javiera;
Panasenko, Grigory

Publication type:

Article

The relation between crosstalk and gene regulation form revisited.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007642

By:

Grah, Rok;
Friedlander, Tamar

Publication type:

Article

A biophysical model of striatal microcircuits suggests delta/theta-rhythmically interleaved gamma and beta oscillations mediate periodicity in motor control.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007300

By:

Chartove, Julia A. K.;
McCarthy, Michelle M.;
Pittman-Polletta, Benjamin R.;
Kopell, Nancy J.

Publication type:

Article

Early prediction of antigenic transitions for influenza A/H3N2.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007683

By:

Castro, Lauren A.;
Bedford, Trevor;
Ancel Meyers, Lauren

Publication type:

Article

Population modeling of tumor growth curves and the reduced Gompertz model improve prediction of the age of experimental tumors.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007178

By:

Vaghi, Cristina;
Rodallec, Anne;
Fanciullino, Raphaëlle;
Ciccolini, Joseph;
Mochel, Jonathan P.;
Mastri, Michalis;
Poignard, Clair;
Ebos, John M. L.;
Benzekry, Sébastien

Publication type:

Article

Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007652

By:

Zinovyev, Andrei;
Czerwinska, Urszula;
Cantini, Laura;
Barillot, Emmanuel;
Frahm, Klaus M.;
Shepelyansky, Dima L.

Publication type:

Article

The SONATA data format for efficient description of large-scale network models.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007696

By:

Dai, Kael;
Hernando, Juan;
Billeh, Yazan N.;
Gratiy, Sergey L.;
Planas, Judit;
Davison, Andrew P.;
Dura-Bernal, Salvador;
Gleeson, Padraig;
Devresse, Adrien;
Dichter, Benjamin K.;
Gevaert, Michael;
King, James G.;
Van Geit, Werner A. H.;
Povolotsky, Arseny V.;
Muller, Eilif;
Courcol, Jean-Denis;
Arkhipov, Anton

Publication type:

Article

A computational framework for a Lyapunov-enabled analysis of biochemical reaction networks.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007681

By:

Ali Al-Radhawi, M.;
Angeli, David;
Sontag, Eduardo D.

Publication type:

Article

Phenotype-based probabilistic analysis of heterogeneous responses to cancer drugs and their combination efficacy.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007688

By:

Comandante-Lou, Natacha;
Khaliq, Mehwish;
Venkat, Divya;
Manikkam, Mohan;
Fallahi-Sichani, Mohammad

Publication type:

Article

Cytoskeleton polarity is essential in determining orientational order in basal bodies of multi-ciliated cells.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007649

By:

Namba, Toshinori;
Ishihara, Shuji

Publication type:

Article

Mathematical modeling to reveal breakthrough mechanisms in the HIV Antibody Mediated Prevention (AMP) trials.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007626

By:

Reeves, Daniel B.;
Huang, Yunda;
Duke, Elizabeth R.;
Mayer, Bryan T.;
Cardozo-Ojeda, E. Fabian;
Boshier, Florencia A.;
Swan, David A.;
Rolland, Morgane;
Robb, Merlin L.;
Mascola, John R.;
Cohen, Myron S.;
Corey, Lawrence;
Gilbert, Peter B.;
Schiffer, Joshua T.

Publication type:

Article

Graph-based description of tertiary lymphoid organs at single-cell level.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007385

By:

Schaadt, Nadine S.;
Schönmeyer, Ralf;
Forestier, Germain;
Brieu, Nicolas;
Braubach, Peter;
Nekolla, Katharina;
Meyer-Hermann, Michael;
Feuerhake, Friedrich

Publication type:

Article

DeepHiC: A Generative Adversarial Network for Enhancing Hi-C Data Resolution.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007287

By:

Hong, Hao;
Jiang, Shuai;
Li, Hao;
Du, Guifang;
Sun, Yu;
Tao, Huan;
Quan, Cheng;
Zhao, Chenghui;
Li, Ruijiang;
Li, Wanying;
Yin, Xiaoyao;
Huang, Yangchen;
Li, Cheng;
Chen, Hebing;
Bo, Xiaochen

Publication type:

Article

Inferring TF activation order in time series scRNA-Seq studies.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007644

By:

Lin, Chieh;
Ding, Jun;
Bar-Joseph, Ziv

Publication type:

Article

Ten Simple Rules to becoming a principal investigator.

Published in:

2020

By:

Tregoning, John S.;
McDermott, Jason E.

Publication type:

Editorial

The role of adaptation in generating monotonic rate codes in auditory cortex.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007627

By:

Lee, Jong Hoon;
Wang, Xiaoqin;
Bendor, Daniel

Publication type:

Article

Deep Learning-driven research for drug discovery: Tackling Malaria.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007025

By:

Neves, Bruno J.;
Braga, Rodolpho C.;
Alves, Vinicius M.;
Lima, Marília N. N.;
Cassiano, Gustavo C.;
Muratov, Eugene N.;
Costa, Fabio T. M.;
Andrade, Carolina Horta

Publication type:

Article

Nonlinear mixed selectivity supports reliable neural computation.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007544

By:

Johnston, W. Jeffrey;
Palmer, Stephanie E.;
Freedman, David J.

Publication type:

Article

Enhancing reproducibility of gene expression analysis with known protein functional relationships: The concept of well-associated protein.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007684

By:

Pradines, Joël R.;
Farutin, Victor;
Cilfone, Nicholas A.;
Ghavami, Abouzar;
Kurtagic, Elma;
Guess, Jamey;
Manning, Anthony M.;
Capila, Ishan

Publication type:

Article

Long-range correlation in protein dynamics: Confirmation by structural data and normal mode analysis.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007670

By:

Tang, Qian-Yuan;
Kaneko, Kunihiko

Publication type:

Article

Coding with transient trajectories in recurrent neural networks.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007655

By:

Bondanelli, Giulio;
Ostojic, Srdjan

Publication type:

Article

SuperFreq: Integrated mutation detection and clonal tracking in cancer.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007603

By:

Flensburg, Christoffer;
Sargeant, Tobias;
Oshlack, Alicia;
Majewski, Ian J.

Publication type:

Article

A generative growth model for thalamocortical axonal branching in primary visual cortex.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007315

By:

Kassraian-Fard, Pegah;
Pfeiffer, Michael;
Bauer, Roman

Publication type:

Article

A stochastic model for simulating ribosome kinetics in vivo.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007618

By:

Dykeman, Eric Charles

Publication type:

Article

RAINBOW: Haplotype-based genome-wide association study using a novel SNP-set method.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007663

By:

Hamazaki, Kosuke;
Iwata, Hiroyoshi

Publication type:

Article

From whole-organ imaging to in-silico blood flow modeling: A new multi-scale network analysis for revisiting tissue functional anatomy.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007322

By:

Kennel, Pol;
Dichamp, Jules;
Barreau, Corinne;
Guissard, Christophe;
Teyssedre, Lise;
Rouquette, Jacques;
Colombelli, Julien;
Lorsignol, Anne;
Casteilla, Louis;
Plouraboué, Franck

Publication type:

Article

Bayesian inference and comparison of stochastic transcription elongation models.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1006717

By:

Douglas, Jordan;
Kingston, Richard;
Drummond, Alexei J.

Publication type:

Article

CovCopCan: An efficient tool to detect Copy Number Variation from amplicon sequencing data in inherited diseases and cancer.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007503

By:

Derouault, Paco;
Chauzeix, Jasmine;
Rizzo, David;
Miressi, Federica;
Magdelaine, Corinne;
Bourthoumieu, Sylvie;
Durand, Karine;
Dzugan, Hélène;
Feuillard, Jean;
Sturtz, Franck;
Mérillou, Stéphane;
Lia, Anne-Sophie

Publication type:

Article

Leveraging effect size distributions to improve polygenic risk scores derived from summary statistics of genome-wide association studies.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007565

By:

Song, Shuang;
Jiang, Wei;
Hou, Lin;
Zhao, Hongyu

Publication type:

Article

Changes-of-mind in the absence of new post-decision evidence.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007149

By:

Atiya, Nadim A. A.;
Zgonnikov, Arkady;
O'Hora, Denis;
Schoemann, Martin;
Scherbaum, Stefan;
Wong-Lin, KongFatt

Publication type:

Article

Surprise response as a probe for compressed memory states.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007065

By:

Levi-Aharoni, Hadar;
Shriki, Oren;
Tishby, Naftali

Publication type:

Article

Neurogranin stimulates Ca<sup>2+</sup>/calmodulin-dependent kinase II by suppressing calcineurin activity at specific calcium spike frequencies.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1006991

By:

Li, Lu;
Lai, Massimo;
Cole, Stephen;
Le Novère, Nicolas;
Edelstein, Stuart J.

Publication type:

Article

The role of spatial structure in the evolution of viral innate immunity evasion: A diffusion-reaction cellular automaton model.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007656

By:

Segredo-Otero, Ernesto;
Sanjuán, Rafael

Publication type:

Article

A mechanism for epithelial-mesenchymal heterogeneity in a population of cancer cells.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007619

By:

Tripathi, Shubham;
Chakraborty, Priyanka;
Levine, Herbert;
Jolly, Mohit Kumar

Publication type:

Article

Host factor prioritization for pan-viral genetic perturbation screens using random intercept models and network propagation.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007587

By:

Dirmeier, Simon;
Dächert, Christopher;
van Hemert, Martijn;
Tas, Ali;
Ogando, Natacha S.;
van Kuppeveld, Frank;
Bartenschlager, Ralf;
Kaderali, Lars;
Binder, Marco;
Beerenwinkel, Niko

Publication type:

Article

A model for time interval learning in the Purkinje cell.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007601

By:

Majoral, Daniel;
Zemmar, Ajmal;
Vicente, Raul

Publication type:

Article

Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007119

By:

Sun, Xiangying;
Wang, Zhezhen;
Hall, Johnathon M.;
Perez-Cervantes, Carlos;
Ruthenburg, Alexander J.;
Moskowitz, Ivan P.;
Gribskov, Michael;
Yang, Xinan H.

Publication type:

Article

Ten simple rules for getting started on Twitter as a scientist.

Published in:

2020

By:

Cheplygina, Veronika;
Hermans, Felienne;
Albers, Casper;
Bielczyk, Natalia;
Smeets, Ionica

Publication type:

Editorial