Works matching IS 1553734X AND DT 2018 AND VI 14 AND IP 11

Results: 51

Tox_(R)CNN: Deep learning-based nuclei profiling tool for drug toxicity screening.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006238
By:
- Jimenez-Carretero, Daniel;
- Abrishami, Vahid;
- Fernández-de-Manuel, Laura;
- Palacios, Irene;
- Quílez-Álvarez, Antonio;
- Díez-Sánchez, Alberto;
- del Pozo, Miguel A.;
- Montoya, María C.
Publication type:
Article
Atlases of cognition with large-scale human brain mapping.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006565
By:
- Varoquaux, Gaël;
- Schwartz, Yannick;
- Poldrack, Russell A.;
- Gauthier, Baptiste;
- Bzdok, Danilo;
- Poline, Jean-Baptiste;
- Thirion, Bertrand
Publication type:
Article
Deterministic response strategies in a trial-and-error learning task.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006621
By:
- Mohr, Holger;
- Zwosta, Katharina;
- Markovic, Dimitrije;
- Bitzer, Sebastian;
- Wolfensteller, Uta;
- Ruge, Hannes
Publication type:
Article
Strategies and opportunities for promoting bioinformatics in Zimbabwe.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006480
By:
- Shoko, Ryman;
- Manasa, Justen;
- Maphosa, Mcebisi;
- Mbanga, Joshua;
- Mudziwapasi, Reagan;
- Nembaware, Victoria;
- Sanyika, Walter T.;
- Tinago, Tawanda;
- Chikwambi, Zedias;
- Mawere, Cephas;
- Matimba, Alice;
- Mugumbate, Grace;
- Mufandaedza, Jonathan;
- Mulder, Nicola;
- Patterton, Hugh
Publication type:
Article
Coevolving residues inform protein dynamics profiles and disease susceptibility of nSNVs.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006626
By:
- Butler, Brandon M.;
- Kazan, I. Can;
- Kumar, Avishek;
- Ozkan, S. Banu
Publication type:
Article
How pupil responses track value-based decision-making during and after reinforcement learning.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006632
By:
- Van Slooten, Joanne C.;
- Jahfari, Sara;
- Knapen, Tomas;
- Theeuwes, Jan
Publication type:
Article
Mechanistic insight into spontaneous transition from cellular alternans to arrhythmia—A simulation study.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006594
By:
- Wang, Wei;
- Zhang, Shanzhuo;
- Ni, Haibo;
- Garratt, Clifford J.;
- Boyett, Mark R.;
- Hancox, Jules C.;
- Zhang, Henggui
Publication type:
Article
Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006583
By:
- Wick, Ryan R.;
- Judd, Louise M.;
- Holt, Kathryn E.
Publication type:
Article
Metabolic models and gene essentiality data reveal essential and conserved metabolism in prokaryotes.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006556
By:
- Xavier, Joana C.;
- Patil, Kiran Raosaheb;
- Rocha, Isabel
Publication type:
Article
Oscillations in working memory and neural binding: A mechanism for multiple memories and their interactions.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006517
By:
- Pina, Jason E.;
- Bodner, Mark;
- Ermentrout, Bard
Publication type:
Article
Cytoplasmic flows in starfish oocytes are fully determined by cortical contractions.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006588
By:
- Klughammer, Nils;
- Bischof, Johanna;
- Schnellbächer, Nikolas D.;
- Callegari, Andrea;
- Lénárt, Péter;
- Schwarz, Ulrich S.
Publication type:
Article
Towards a molecular basis of ubiquitin signaling: A dual-scale simulation study of ubiquitin dimers.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006589
By:
- Berg, Andrej;
- Kukharenko, Oleksandra;
- Scheffner, Martin;
- Peter, Christine
Publication type:
Article
powerTCR: A model-based approach to comparative analysis of the clone size distribution of the T cell receptor repertoire.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006571
By:
- Koch, Hillary;
- Starenki, Dmytro;
- Cooper, Sara J.;
- Myers, Richard M.;
- Li, Qunhua
Publication type:
Article
Modeling craniofacial development reveals spatiotemporal constraints on robust patterning of the mandibular arch.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006569
By:
- Meinecke, Lina;
- Sharma, Praveer P.;
- Du, Huijing;
- Zhang, Lei;
- Nie, Qing;
- Schilling, Thomas F.
Publication type:
Article
RNA3DCNN: Local and global quality assessments of RNA 3D structures using 3D deep convolutional neural networks.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006514
By:
- Li, Jun;
- Zhu, Wei;
- Wang, Jun;
- Li, Wenfei;
- Gong, Sheng;
- Zhang, Jian;
- Wang, Wei
Publication type:
Article
A Bayesian mixture modelling approach for spatial proteomics.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006516
By:
- Crook, Oliver M.;
- Mulvey, Claire M.;
- Kirk, Paul D. W.;
- Lilley, Kathryn S.;
- Gatto, Laurent
Publication type:
Article
Determinants of early afterdepolarization properties in ventricular myocyte models.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006382
By:
- Huang, Xiaodong;
- Song, Zhen;
- Qu, Zhilin
Publication type:
Article
Comprehensive computational modelling of the development of mammalian cortical connectivity underlying an architectonic type principle.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006550
By:
- Beul, Sarah F.;
- Goulas, Alexandros;
- Hilgetag, Claus C.
Publication type:
Article
Binding of the general anesthetic sevoflurane to ion channels.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006605
By:
- Stock, Letícia;
- Hosoume, Juliana;
- Cirqueira, Leonardo;
- Treptow, Werner
Publication type:
Article
Ten simple rules for collaboratively writing a multi-authored paper.
Published in:
2018
By:
- Frassl, Marieke A.;
- Hamilton, David P.;
- Denfeld, Blaize A.;
- de Eyto, Elvira;
- Hampton, Stephanie E.;
- Keller, Philipp S.;
- Sharma, Sapna;
- Lewis, Abigail S. L.;
- Weyhenmeyer, Gesa A.;
- O’Reilly, Catherine M.;
- Lofton, Mary E.;
- Catalán, Núria
Publication type:
Editorial
Adaptive feature detection from differential processing in parallel retinal pathways.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006560
By:
- Ozuysal, Yusuf;
- Kastner, David B.;
- Baccus, Stephen A.
Publication type:
Article
Rosetta FunFolDes – A general framework for the computational design of functional proteins.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006623
By:
- Bonet, Jaume;
- Wehrle, Sarah;
- Schriever, Karen;
- Yang, Che;
- Billet, Anne;
- Sesterhenn, Fabian;
- Scheck, Andreas;
- Sverrisson, Freyr;
- Veselkova, Barbora;
- Vollers, Sabrina;
- Lourman, Roxanne;
- Villard, Mélanie;
- Rosset, Stéphane;
- Krey, Thomas;
- Correia, Bruno E.
Publication type:
Article
Simulations of blood as a suspension predicts a depth dependent hematocrit in the circulation throughout the cerebral cortex.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006549
By:
- Hartung, Grant;
- Vesel, Claudia;
- Morley, Ryan;
- Alaraj, Ali;
- Sled, John;
- Kleinfeld, David;
- Linninger, Andreas
Publication type:
Article
Visual physiology of the layer 4 cortical circuit in silico.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006535
By:
- Arkhipov, Anton;
- Gouwens, Nathan W.;
- Billeh, Yazan N.;
- Gratiy, Sergey;
- Iyer, Ramakrishnan;
- Wei, Ziqiang;
- Xu, Zihao;
- Abbasi-Asl, Reza;
- Berg, Jim;
- Buice, Michael;
- Cain, Nicholas;
- da Costa, Nuno;
- de Vries, Saskia;
- Denman, Daniel;
- Durand, Severine;
- Feng, David;
- Jarsky, Tim;
- Lecoq, Jerome;
- Lee, Brian;
- Li, Lu
Publication type:
Article
Invasion and effective size of graph-structured populations.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006559
By:
- Giaimo, Stefano;
- Arranz, Jordi;
- Traulsen, Arne
Publication type:
Article
Patterning the insect eye: From stochastic to deterministic mechanisms.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006363
By:
- Ebadi, Haleh;
- Perry, Michael;
- Short, Keith;
- Klemm, Konstantin;
- Desplan, Claude;
- Stadler, Peter F.;
- Mehta, Anita
Publication type:
Article
Ten simple rules for delivering live distance training in bioinformatics across the globe using webinars.
Published in:
2018
By:
- Carvalho-Silva, Denise;
- Garcia, Leyla;
- Morgan, Sarah L.;
- Brooksbank, Cath;
- Dunham, Ian
Publication type:
Editorial
Comparing Bayesian and non-Bayesian accounts of human confidence reports.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006572
By:
- Adler, William T.;
- Ma, Wei Ji
Publication type:
Article
A regularity index for dendrites - local statistics of a neuron's input space.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006593
By:
- Anton-Sanchez, Laura;
- Effenberger, Felix;
- Bielza, Concha;
- Larrañaga, Pedro;
- Cuntz, Hermann
Publication type:
Article
Inferring interaction partners from protein sequences using mutual information.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006401
By:
- Bitbol, Anne-Florence
Publication type:
Article
Bayesian phylodynamic inference with complex models.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006546
By:
- Volz, Erik M.;
- Siveroni, Igor
Publication type:
Article
Moth olfactory receptor neurons adjust their encoding efficiency to temporal statistics of pheromone fluctuations.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006586
By:
- Levakova, Marie;
- Kostal, Lubomir;
- Monsempès, Christelle;
- Jacob, Vincent;
- Lucas, Philippe
Publication type:
Article
Functional mechanisms underlie the emergence of a diverse range of plasticity phenomena.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006590
By:
- Henderson, James A.;
- Gong, Pulin
Publication type:
Article
Correction: Assessment of ab initio models of protein complexes by molecular dynamics.
Published in:
2018
Publication type:
Correction Notice
A benchmark driven guide to binding site comparison: An exhaustive evaluation using tailor-made data sets (ProSPECCTs).
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006483
By:
- Ehrt, Christiane;
- Brinkjost, Tobias;
- Koch, Oliver
Publication type:
Article
Modulation of voltage-dependent K<sup>+</sup> conductances in photoreceptors trades off investment in contrast gain for bandwidth.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006566
By:
- H. Heras, Francisco J.;
- Vähäsöyrinki, Mikko;
- Niven, Jeremy E.
Publication type:
Article
A computational analysis of dynamic, multiorgan inflammatory crosstalk induced by endotoxin in mice.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006582
By:
- Zamora, Ruben;
- Korff, Sebastian;
- Qi Mi;
- Barclay, Derek;
- Schimunek, Lukas;
- Zucca, Riccardo;
- Arsiwalla, Xerxes D.;
- Simmons, Richard L.;
- Verschure, Paul;
- Billiar, Timothy R.;
- Vodovotz, Yoram
Publication type:
Article
Chromatin remodelers couple inchworm motion with twist-defect formation to slide nucleosomal DNA.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006512
By:
- Brandani, Giovanni B.;
- Takada, Shoji
Publication type:
Article
Comparative structural dynamic analysis of GTPases.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006364
By:
- Li, Hongyang;
- Yao, Xin-Qiu;
- Grant, Barry J.
Publication type:
Article
Prediction and classification in equation-free collective motion dynamics.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006545
By:
- Fujii, Keisuke;
- Kawasaki, Takeshi;
- Inaba, Yuki;
- Kawahara, Yoshinobu
Publication type:
Article
Modulation of voltage-dependent K<sup>+</sup> conductances in photoreceptors trades off investment in contrast gain for bandwidth.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006566
By:
- Heras, Francisco J. H.;
- Vähäsöyrinki, Mikko;
- Niven, Jeremy E.
Publication type:
Article
Systematically benchmarking peptide-MHC binding predictors: From synthetic to naturally processed epitopes.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006457
By:
- Zhao, Weilong;
- Sher, Xinwei
Publication type:
Article
The Cultural Brain Hypothesis: How culture drives brain expansion, sociality, and life history.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006504
By:
- Muthukrishna, Michael;
- Doebeli, Michael;
- Chudek, Maciej;
- Henrich, Joseph
Publication type:
Article
Putting benchmarks in their rightful place: The heart of computational biology.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006494
By:
- Peters, Bjoern;
- Brenner, Steven E.;
- Wang, Edwin;
- Slonim, Donna;
- Kann, Maricel G.
Publication type:
Article
Synthetic protein alignments by CCMgen quantify noise in residue-residue contact prediction.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006526
By:
- Vorberg, Susann;
- Seemayer, Stefan;
- Söding, Johannes
Publication type:
Article
A computational analysis of dynamic, multi-organ inflammatory crosstalk induced by endotoxin in mice.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006582
By:
- Zamora, Ruben;
- Korff, Sebastian;
- Mi, Qi;
- Barclay, Derek;
- Schimunek, Lukas;
- Zucca, Riccardo;
- Arsiwalla, Xerxes D.;
- Simmons, Richard L.;
- Verschure, Paul;
- Billiar, Timothy R.;
- Vodovotz, Yoram
Publication type:
Article
Modeling driver cells in developing neuronal networks.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006551
By:
- Luccioli, Stefano;
- Angulo-Garcia, David;
- Cossart, Rosa;
- Malvache, Arnaud;
- Módol, Laura;
- Sousa, Vitor Hugo;
- Bonifazi, Paolo;
- Torcini, Alessandro
Publication type:
Article
Demonstrating aspects of multiscale modeling by studying the permeation pathway of the human ZnT2 zinc transporter.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006503
By:
- Golan, Yarden;
- Alhadeff, Raphael;
- Glaser, Fabian;
- Ganoth, Assaf;
- Warshel, Arieh;
- Assaraf, Yehuda G.
Publication type:
Article
Motif-Aware PRALINE: Improving the alignment of motif regions.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006547
By:
- Dijkstra, Maurits;
- Bawono, Punto;
- Abeln, Sanne;
- Feenstra, K. Anton;
- Fokkink, Wan;
- Heringa, Jaap
Publication type:
Article
Active dendrites regulate the spatiotemporal spread of signaling microdomains.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006485
By:
- Basak, Reshma;
- Narayanan, Rishikesh
Publication type:
Article