Works matching IS 1553734X AND DT 2019 AND VI 15 AND IP 4

Results: 75

I_MDS: an inflammatory bowel disease molecular activity score to classify patients with differing disease-driving pathways and therapeutic response to anti-TNF treatment.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006951

By:

Pavlidis, Stelios;
Monast, Calixte;
Loza, Matthew J.;
Branigan, Patrick;
Chung, Kiang F.;
Adcock, Ian M.;
Guo, Yike;
Rowe, Anthony;
Baribaud, Frédéric

Publication type:

Article

The life history of learning: Demographic structure changes cultural outcomes.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006821

By:

Fogarty, Laurel;
Creanza, Nicole;
Feldman, Marcus W.

Publication type:

Article

A multiscale model of epigenetic heterogeneity-driven cell fate decision-making.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006592

By:

Folguera-Blasco, Núria;
Pérez-Carrasco, Rubén;
Cuyàs, Elisabet;
Menendez, Javier A.;
Alarcón, Tomás

Publication type:

Article

Gap junctions set the speed and nucleation rate of stage I retinal waves.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006355

By:

Kähne, Malte;
Rüdiger, Sten;
Kihara, Alexandre Hiroaki;
Lindner, Benjamin

Publication type:

Article

The nonlinear dynamics and fluctuations of mRNA levels in cell cycle coupled transcription.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007017

By:

Sun, Qiwen;
Jiao, Feng;
Lin, Genghong;
Yu, Jianshe;
Tang, Moxun

Publication type:

Article

Finding driver mutations in cancer: Elucidating the role of background mutational processes.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006981

By:

Brown, Anna-Leigh;
Li, Minghui;
Goncearenco, Alexander;
Panchenko, Anna R.

Publication type:

Article

Integrated computational and Drosophila cancer model platform captures previously unappreciated chemicals perturbing a kinase network.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006878

By:

Ung, Peter M. U.;
Sonoshita, Masahiro;
Scopton, Alex P.;
Dar, Arvin C.;
Cagan, Ross L.;
Schlessinger, Avner

Publication type:

Article

A Bayesian framework for the analysis of systems biology models of the brain.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006631

By:

Russell-Buckland, Joshua;
Barnes, Christopher P.;
Tachtsidis, Ilias

Publication type:

Article

Clonal hematopoiesis of indeterminate potential and its impact on patient trajectories after stem cell transplantation.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006913

By:

Park, Derek S.;
Akuffo, Afua A.;
Muench, David E.;
Grimes, H. Leighton;
Epling-Burnette, Pearlie K.;
Maini, Philip K.;
Anderson, Alexander R. A.;
Bonsall, Michael B.

Publication type:

Article

Chemical features mining provides new descriptive structure-odor relationships.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006945

By:

Licon, Carmen C.;
Bosc, Guillaume;
Sabri, Mohammed;
Mantel, Marylou;
Fournel, Arnaud;
Bushdid, Caroline;
Golebiowski, Jerome;
Robardet, Celine;
Plantevit, Marc;
Kaytoue, Mehdi;
Bensafi, Moustafa

Publication type:

Article

Revealing evolutionary constraints on proteins through sequence analysis.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007010

By:

Wang, Shou-Wen;
Bitbol, Anne-Florence;
Wingreen, Ned S.

Publication type:

Article

Ten simple rules for providing a meaningful research experience to high school students.

Published in:

2019

By:

Lescak, Emily A.;
O’Neill, Kate M.;
Collu, Giovanna M.;
Das, Subhamoy

Publication type:

Editorial

Details in the evaluation of circular RNA detection tools: Reply to Chen and Chuang.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006916

By:

Zeng, Xiangxiang;
Lin, Wei;
Guo, Maozu;
Zou, Quan

Publication type:

Article

TASmania: A bacterial Toxin-Antitoxin Systems database.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006946

By:

Akarsu, Hatice;
Bordes, Patricia;
Mansour, Moise;
Bigot, Donna-Joe;
Genevaux, Pierre;
Falquet, Laurent

Publication type:

Article

Leveraging heterogeneity for neural computation with fading memory in layer 2/3 cortical microcircuits.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006781

By:

Duarte, Renato;
Morrison, Abigail

Publication type:

Article

A kinetic model for Brain-Derived Neurotrophic Factor mediated spike timing-dependent LTP.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006975

By:

Solinas, Sergio M. G.;
Edelmann, Elke;
Leßmann, Volkmar;
Migliore, Michele

Publication type:

Article

Hydrodynamics of transient cell-cell contact: The role of membrane permeability and active protrusion length.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006352

By:

Liu, Kai;
Chu, Brian;
Newby, Jay;
Read, Elizabeth L.;
Lowengrub, John;
Allard, Jun

Publication type:

Article

Synchronization dependent on spatial structures of a mesoscopic whole-brain network.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006978

By:

Choi, Hannah;
Mihalas, Stefan

Publication type:

Article

Deep convolutional models improve predictions of macaque V1 responses to natural images.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006897

By:

Cadena, Santiago A.;
Denfield, George H.;
Walker, Edgar Y.;
Gatys, Leon A.;
Tolias, Andreas S.;
Bethge, Matthias;
Ecker, Alexander S.

Publication type:

Article

Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006842

By:

Bliven, Spencer E;
Lafita, Aleix;
Rose, Peter W;
Capitani, Guido;
Prlić, Andreas;
Bourne, Philip E

Publication type:

Article

Finding the balance between model complexity and performance: Using ventral striatal oscillations to classify feeding behavior in rats.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006838

By:

Dwiel, Lucas L.;
Khokhar, Jibran Y.;
Connerney, Michael A.;
Green, Alan I.;
Doucette, Wilder T.

Publication type:

Article

Isolating and quantifying the role of developmental noise in generating phenotypic variation.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006943

By:

Kiskowski, Maria;
Glimm, Tilmann;
Moreno, Nickolas;
Gamble, Tony;
Chiari, Ylenia

Publication type:

Article

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006971

By:

Lachance, Jean-Christophe;
Lloyd, Colton J.;
Monk, Jonathan M.;
Yang, Laurence;
Sastry, Anand V.;
Seif, Yara;
Palsson, Bernhard O.;
Rodrigue, Sébastien;
Feist, Adam M.;
King, Zachary A.;
Jacques, Pierre-Étienne

Publication type:

Article

Weak electric fields promote resonance in neuronal spiking activity: Analytical results from two-compartment cell and network models.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006974

By:

Ladenbauer, Josef;
Obermayer, Klaus

Publication type:

Article

Neural crest streaming as an emergent property of tissue interactions during morphogenesis.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007002

By:

Szabó, András;
Theveneau, Eric;
Turan, Melissa;
Mayor, Roberto

Publication type:

Article

A benchmark-driven approach to reconstruct metabolic networks for studying cancer metabolism.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006936

By:

Jamialahmadi, Oveis;
Hashemi-Najafabadi, Sameereh;
Motamedian, Ehsan;
Romeo, Stefano;
Bagheri, Fatemeh

Publication type:

Article

Temporal pattern separation in hippocampal neurons through multiplexed neural codes.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006932

By:

Madar, Antoine D.;
Ewell, Laura A.;
Jones, Mathew V.

Publication type:

Article

A Bayesian model of acquisition and clearance of bacterial colonization incorporating within-host variation.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006534

By:

Järvenpää, Marko;
Sater, Mohamad R. Abdul;
Lagoudas, Georgia K.;
Blainey, Paul C.;
Miller, Loren G.;
McKinnell, James A.;
Huang, Susan S.;
Grad, Yonatan H.;
Marttinen, Pekka

Publication type:

Article

Bet-hedging strategies in expanding populations.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006529

By:

Villa Martín, Paula;
Muñoz, Miguel A.;
Pigolotti, Simone

Publication type:

Article

SPINDLE: End-to-end learning from EEG/EMG to extrapolate animal sleep scoring across experimental settings, labs and species.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006968

By:

Miladinović, Đorđe;
Muheim, Christine;
Bauer, Stefan;
Spinnler, Andrea;
Noain, Daniela;
Bandarabadi, Mojtaba;
Gallusser, Benjamin;
Krummenacher, Gabriel;
Baumann, Christian;
Adamantidis, Antoine;
Brown, Steven A.;
Buhmann, Joachim M.

Publication type:

Article

Imperfect Bayesian inference in visual perception.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006465

By:

Stengård, Elina;
van den Berg, Ronald

Publication type:

Article

Toward a 3D model of phyllotaxis based on a biochemically plausible auxin-transport mechanism.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006896

By:

Hartmann, Félix P.;
Barbier de Reuille, Pierre;
Kuhlemeier, Cris

Publication type:

Article

Predicting synthetic lethal interactions using conserved patterns in protein interaction networks.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006888

By:

Benstead-Hume, Graeme;
Chen, Xiangrong;
Hopkins, Suzanna R.;
Lane, Karen A.;
Downs, Jessica A.;
Pearl, Frances M. G.

Publication type:

Article

Learning and forgetting using reinforced Bayesian change detection.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006713

By:

Moens, Vincent;
Zénon, Alexandre

Publication type:

Article

Neural control of body-plan axis in regenerating planaria.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006904

By:

Pietak, Alexis;
Bischof, Johanna;
LaPalme, Joshua;
Morokuma, Junji;
Levin, Michael

Publication type:

Article

Competing evolutionary paths in growing populations with applications to multidrug resistance.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006866

By:

Nicholson, Michael D.;
Antal, Tibor

Publication type:

Article

Approximate Bayesian estimation of coevolutionary arms races.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006988

By:

Nuismer, Scott L.;
Week, Bob

Publication type:

Article

Passenger mutations accurately classify human tumors.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006953

By:

Salvadores, Marina;
Mas-Ponte, David;
Supek, Fran

Publication type:

Article

GOOGA: A platform to synthesize mapping experiments and identify genomic structural diversity.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006949

By:

Flagel, Lex E.;
Blackman, Benjamin K.;
Fishman, Lila;
Monnahan, Patrick J.;
Sweigart, Andrea;
Kelly, John K.

Publication type:

Article

MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006982

By:

Juric, Ivan;
Yu, Miao;
Abnousi, Armen;
Raviram, Ramya;
Fang, Rongxin;
Zhao, Yuan;
Zhang, Yanxiao;
Qiu, Yunjiang;
Yang, Yuchen;
Li, Yun;
Ren, Bing;
Hu, Ming

Publication type:

Article

Increasing consensus of context-specific metabolic models by integrating data-inferred cell functions.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006867

By:

Richelle, Anne;
Chiang, Austin W. T.;
Kuo, Chih-Chung;
Lewis, Nathan E.

Publication type:

Article

A global map of the protein shape universe.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006969

By:

Xusi Han;
Sit, Atilla;
Christoffer, Charles;
Siyang Chen;
Daisuke Kihara

Publication type:

Article

The relative contribution of color and material in object selection.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006950

By:

Radonjić, Ana;
Cottaris, Nicolas P.;
Brainard, David H.

Publication type:

Article

Assessing intra-lab precision and inter-lab repeatability of outgrowth assays of HIV-1 latent reservoir size.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006849

By:

Rosenbloom, Daniel I. S.;
Bacchetti, Peter;
Stone, Mars;
Xutao Deng;
Bosch, Ronald J.;
Richman, Douglas D.;
Siliciano, Janet D.;
Mellors, John W.;
Deeks, Steven G.;
Ptak, Roger G.;
Hoh, Rebecca;
Keating, Sheila M.;
Dimapasoc, Melanie;
Massanella, Marta;
Jun Lai;
Sobolewski, Michele D.;
Kulpa, Deanna A.;
Busch, Michael P.

Publication type:

Article

Microstimulation in a spiking neural network model of the midbrain superior colliculus.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006522

By:

Kasap, Bahadir;
van Opstal, A. John

Publication type:

Article

Reconciling high-throughput gene essentiality data with metabolic network reconstructions.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006507

By:

Blazier, Anna S.;
Papin, Jason A.

Publication type:

Article

Model-based analysis of influenza A virus replication in genetically engineered cell lines elucidates the impact of host cell factors on key kinetic parameters of virus growth.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006944

By:

Laske, Tanja;
Bachmann, Mandy;
Dostert, Melanie;
Karlas, Alexander;
Wirth, Dagmar;
Frensing, Timo;
Meyer, Thomas F.;
Hauser, Hansjörg;
Reichl, Udo

Publication type:

Article

Exon level machine learning analyses elucidate novel candidate miRNA targets in an avian model of fetal alcohol spectrum disorder.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006937

By:

Al-Shaer, Abrar E.;
Flentke, George R.;
Berres, Mark E.;
Garic, Ana;
Smith, Susan M.

Publication type:

Article

Ten quick tips for creating an effective lesson.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006915

By:

Wilson, Greg

Publication type:

Article

Ten simple rules towards healthier research labs.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006914

By:

Maestre, Fernando T.

Publication type:

Article