Works matching IS 1553734X AND DT 2018 AND VI 14 AND IP 2

Results: 48

Ligand-induced perturbation of the HIF-2α:ARNT dimer dynamics.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1006021

By:

Motta, Stefano;
Minici, Claudia;
Corrada, Dario;
Bonati, Laura;
Pandini, Alessandro

Publication type:

Article

Genetic programming based models in plant tissue culture: An addendum to traditional statistical approach.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005976

By:

Mridula, Meenu R.;
Nair, Ashalatha S.;
Kumar, K. Satheesh

Publication type:

Article

Multiscale modeling of layer formation in epidermis.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1006006

By:

Du, Huijing;
Wang, Yangyang;
Haensel, Daniel;
Lee, Briana;
Dai, Xing;
Nie, Qing

Publication type:

Article

Differential tissue growth and cell adhesion alone drive early tooth morphogenesis: An ex vivo and in silico study.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005981

By:

Marin-Riera, Miquel;
Moustakas-Verho, Jacqueline;
Savriama, Yoland;
Jernvall, Jukka;
Salazar-Ciudad, Isaac

Publication type:

Article

Mathematical modelling of the antibiotic-induced morphological transition of Pseudomonas aeruginosa.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1006012

By:

Spalding, Chloe;
Keen, Emma;
Smith, David J;
Krachler, Anne-Marie;
Jabbari, Sara

Publication type:

Article

Systems-level computational modeling demonstrates fuel selection switching in high capacity running and low capacity running rats.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005982

By:

Moxley, Michael A.;
Vinnakota, Kalyan C.;
Bazil, Jason N.;
Qi, Nathan R.;
Beard, Daniel A.

Publication type:

Article

Integrating linear optimization with structural modeling to increase HIV neutralization breadth.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005999

By:

Sevy, Alexander M.;
Panda, Swetasudha;
JrCrowe, James E.;
Meiler, Jens;
Vorobeychik, Yevgeniy

Publication type:

Article

PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005991

By:

Ghaffarizadeh, Ahmadreza;
Heiland, Randy;
Friedman, Samuel H.;
Mumenthaler, Shannon M.;
Macklin, Paul

Publication type:

Article

A biophysical model of dynamic balancing of excitation and inhibition in fast oscillatory large-scale networks.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1006007

By:

Abeysuriya, Romesh G.;
Hadida, Jonathan;
Sotiropoulos, Stamatios N.;
Jbabdi, Saad;
Becker, Robert;
Hunt, Benjamin A. E.;
Brookes, Matthew J.;
Woolrich, Mark W.

Publication type:

Article

Memory functions reveal structural properties of gene regulatory networks.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1006003

By:

Herrera-Delgado, Edgar;
Perez-Carrasco, Ruben;
Briscoe, James;
Sollich, Peter

Publication type:

Article

Association between expression of random gene sets and survival is evident in multiple cancer types and may be explained by sub-classification.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1006026

By:

Shimoni, Yishai

Publication type:

Article

The self-organization of plant microtubules inside the cell volume yields their cortical localization, stable alignment, and sensitivity to external cues.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1006011

By:

Mirabet, Vincent;
Krupinski, Pawel;
Hamant, Olivier;
Meyerowitz, Elliot M.;
Jönsson, Henrik;
Boudaoud, Arezki

Publication type:

Article

Exploiting the geometry of the solution space to reduce sensitivity to neuromotor noise.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1006013

By:

Zhang, Zhaoran;
Guo, Dena;
Huber, Meghan E.;
Park, Se-Woong;
Sternad, Dagmar

Publication type:

Article

A stochastic and dynamical view of pluripotency in mouse embryonic stem cells.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1006000

By:

Lin, Yen Ting;
Hufton, Peter G.;
Lee, Esther J.;
Potoyan, Davit A.

Publication type:

Article

Metabolic enzyme cost explains variable trade-offs between microbial growth rate and yield.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1006010

By:

Wortel, Meike T.;
Noor, Elad;
Ferris, Michael;
Bruggeman, Frank J.;
Liebermeister, Wolfram

Publication type:

Article

Prediction of infectious disease epidemics via weighted density ensembles.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005910

By:

Ray, Evan L.;
Reich, Nicholas G.

Publication type:

Article

Trade-off between synergy and efficacy in combinations of HIV-1 latency-reversing agents.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1006004

By:

Gupta, Vipul;
Dixit, Narendra M.

Publication type:

Article

In silico analysis of antibiotic-induced Clostridium difficile infection: Remediation techniques and biological adaptations.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1006001

By:

Jones, Eric W.;
Carlson, Jean M.

Publication type:

Article

Control fast or control smart: When should invading pathogens be controlled?

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1006014

By:

Thompson, Robin N.;
Gilligan, Christopher A.;
Cunniffe, Nik J.

Publication type:

Article

Modeling the interactions of sense and antisense Period transcripts in the mammalian circadian clock network.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005957

By:

Battogtokh, Dorjsuren;
Kojima, Shihoko;
Tyson, John J.

Publication type:

Article

A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005962

By:

Westergaard, David;
Stærfeldt, Hans-Henrik;
Tønsberg, Christian;
Jensen, Lars Juhl;
Brunak, Søren

Publication type:

Article

Life cycle synchronization is a viral drug resistance mechanism.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005947

By:

Neagu, Iulia A.;
Olejarz, Jason;
Freeman, Mark;
Rosenbloom, Daniel I.S.;
Nowak, Martin A.;
Hill, Alison L.

Publication type:

Article

Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005740

By:

Touré, Vasundra;
Le Novère, Nicolas;
Waltemath, Dagmar;
Wolkenhauer, Olaf

Publication type:

Article

Optimizing homeostatic cell renewal in hierarchical tissues.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005967

By:

Alvarado, Cesar;
Fider, Nicole A.;
Wearing, Helen J.;
Komarova, Natalia L.

Publication type:

Article

A model of risk and mental state shifts during social interaction.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005935

By:

Hula, Andreas;
Vilares, Iris;
Lohrenz, Terry;
Dayan, Peter;
Montague, P. Read

Publication type:

Article

A multiscale modelling approach to assess the impact of metabolic zonation and microperfusion on the hepatic carbohydrate metabolism.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1006005

By:

Berndt, Nikolaus;
Horger, Marius Stefan;
Bulik, Sascha;
Holzhütter, Hermann-Georg

Publication type:

Article

Spike and burst coding in thalamocortical relay cells.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005960

By:

Zeldenrust, Fleur;
Chameau, Pascal;
Wadman, Wytse J.

Publication type:

Article

History dependence in insect flight decisions during odor tracking.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005969

By:

Pang, Rich;
van Breugel, Floris;
Dickinson, Michael;
Riffell, Jeffrey A.;
Fairhall, Adrienne

Publication type:

Article

Same but not alike: Structure, flexibility and energetics of domains in multi-domain proteins are influenced by the presence of other domains.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1006008

By:

Vishwanath, Sneha;
de Brevern, Alexandre G.;
Srinivasan, Narayanaswamy

Publication type:

Article

Hub connectivity, neuronal diversity, and gene expression in the Caenorhabditis elegans connectome.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005989

By:

Arnatkevic̆iūtė, Aurina;
Fulcher, Ben D.;
Pocock, Roger;
Fornito, Alex

Publication type:

Article

Examining the controllability of sepsis using genetic algorithms on an agent-based model of systemic inflammation.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005876

By:

Cockrell, Robert Chase;
An, Gary

Publication type:

Article

The feasibility of equilibria in large ecosystems: A primary but neglected concept in the complexity-stability debate.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005988

By:

Dougoud, Michaël;
Vinckenbosch, Laura;
Rohr, Rudolf P.;
Bersier, Louis-Félix;
Mazza, Christian

Publication type:

Article

Self-crowding of AMPA receptors in the excitatory postsynaptic density can effectuate anomalous receptor sub-diffusion.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005984

By:

Gupta, Rahul

Publication type:

Article

Recognition of sites of functional specialisation in all known eukaryotic protein kinase families.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005975

By:

Kalaivani, Raju;
Reema, Raju;
Srinivasan, Narayanaswamy

Publication type:

Article

Electrical receptive fields of retinal ganglion cells: Influence of presynaptic neurons.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005997

By:

Maturana, Matias I.;
Apollo, Nicholas V.;
Garrett, David J.;
Kameneva, Tatiana;
Cloherty, Shaun L.;
Grayden, David B.;
Burkitt, Anthony N.;
Ibbotson, Michael R.;
Meffin, Hamish

Publication type:

Article

Heritable tumor cell division rate heterogeneity induces clonal dominance.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005954

By:

Palm, Margriet M.;
Elemans, Marjet;
Beltman, Joost B.

Publication type:

Article

A computational approach to distinguish somatic vs. germline origin of genomic alterations from deep sequencing of cancer specimens without a matched normal.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005965

By:

Sun, James X.;
He, Yuting;
Sanford, Eric;
Montesion, Meagan;
Frampton, Garrett M.;
Vignot, Stéphane;
Soria, Jean-Charles;
Ross, Jeffrey S.;
Miller, Vincent A.;
Stephens, Phil J.;
Lipson, Doron;
Yelensky, Roman

Publication type:

Article

Interpretation of correlated neural variability from models of feed-forward and recurrent circuits.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005979

By:

Pernice, Volker;
da Silveira, Rava Azeredo

Publication type:

Article

Membrane perturbing properties of toxin mycolactone from Mycobacterium ulcerans.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005972

By:

López, Cesar A.;
Unkefer, Clifford J.;
Swanson, Basil I.;
Swanson, Jessica M. J.;
Gnanakaran, S.

Publication type:

Article

A maximum-entropy model for predicting chromatin contacts.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005956

By:

Farré, Pau;
Emberly, Eldon

Publication type:

Article

A phylogenetic method to perform genome-wide association studies in microbes that accounts for population structure and recombination.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005958

By:

Collins, Caitlin;
Didelot, Xavier

Publication type:

Article

Evolutionary analysis of polyproline motifs in Escherichia coli reveals their regulatory role in translation.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005987

By:

Qi, Fei;
Motz, Magdalena;
Jung, Kirsten;
Lassak, Jürgen;
Frishman, Dmitrij

Publication type:

Article

Imaging of neural oscillations with embedded inferential and group prevalence statistics.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005990

By:

Donhauser, Peter W.;
Florin, Esther;
Baillet, Sylvain

Publication type:

Article

Simulation enabled search for explanatory mechanisms of the fracture healing process.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005980

By:

Kennedy, Ryan C.;
Marmor, Meir;
Marcucio, Ralph;
Hunt, C. Anthony

Publication type:

Article

Biophysical attributes that affect CaMKII activation deduced with a novel spatial stochastic simulation approach.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005946

By:

Li, Ximing;
Holmes, William R.

Publication type:

Article

Ten simple rules for writing a popular science book.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005808

By:

Kucharski, Adam J.

Publication type:

Article

A computational framework for cortical microtubule dynamics in realistically shaped plant cells.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005959

By:

Chakrabortty, Bandan;
Blilou, Ikram;
Scheres, Ben;
Mulder, Bela M.

Publication type:

Article

The development and application of bioinformatics core competencies to improve bioinformatics training and education.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005772

By:

Mulder, Nicola;
Schwartz, Russell;
Brazas, Michelle D.;
Brooksbank, Cath;
Gaeta, Bruno;
Morgan, Sarah L.;
Pauley, Mark A.;
Rosenwald, Anne;
Rustici, Gabriella;
Sierk, Michael;
Warnow, Tandy;
Welch, Lonnie

Publication type:

Article