Works matching IS 1553734X AND DT 2018 AND VI 14 AND IP 5

Results: 46

Simulations to benchmark time-varying connectivity methods for fMRI.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006196

By:

Thompson, William Hedley;
Richter, Craig Geoffrey;
Plavén-Sigray, Pontus;
Fransson, Peter

Publication type:

Article

Variability in pulmonary vein electrophysiology and fibrosis determines arrhythmia susceptibility and dynamics.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006166

By:

Roney, Caroline H.;
Bayer, Jason D.;
Cochet, Hubert;
Meo, Marianna;
Dubois, Rémi;
Jaïs, Pierre;
Vigmond, Edward J.

Publication type:

Article

Traceability, reproducibility and wiki-exploration for “à-la-carte” reconstructions of genome-scale metabolic models.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006146

By:

Aite, Méziane;
Chevallier, Marie;
Frioux, Clémence;
Trottier, Camille;
Got, Jeanne;
Cortés, María Paz;
Mendoza, Sebastián N.;
Carrier, Grégory;
Dameron, Olivier;
Guillaudeux, Nicolas;
Latorre, Mauricio;
Loira, Nicolás;
Markov, Gabriel V.;
Maass, Alejandro;
Siegel, Anne

Publication type:

Article

Structural organization and energy storage in crosslinked actin assemblies.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006150

By:

Ma, Rui;
Berro, Julien

Publication type:

Article

Quantitative theory of deep brain stimulation of the subthalamic nucleus for the suppression of pathological rhythms in Parkinson’s disease.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006217

By:

Müller, Eli J.;
Robinson, Peter A.

Publication type:

Article

Correction: Solving the influence maximization problem reveals regulatory organization of the yeast cell cycle.

Published in:: 2018
Publication type:: Correction Notice

Logistical constraints lead to an intermediate optimum in outbreak response vaccination.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006161

By:

Tao, Yun;
Shea, Katriona;
Ferrari, Matthew

Publication type:

Article

On the role of sparseness in the evolution of modularity in gene regulatory networks.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006172

By:

Espinosa-Soto, Carlos

Publication type:

Article

Parameter uncertainty quantification using surrogate models applied to a spatial model of yeast mating polarization.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006181

By:

Renardy, Marissa;
Yi, Tau-Mu;
Xiu, Dongbin;
Chou, Ching-Shan

Publication type:

Article

Detecting change in stochastic sound sequences.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006162

By:

Skerritt-Davis, Benjamin;
Elhilali, Mounya

Publication type:

Article

Can a time varying external drive give rise to apparent criticality in neural systems?

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006081

By:

Priesemann, Viola;
Shriki, Oren

Publication type:

Article

Coupled feedback loops maintain synaptic long-term potentiation: A computational model of PKMzeta synthesis and AMPA receptor trafficking.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006147

By:

Helfer, Peter;
Shultz, Thomas R.

Publication type:

Article

How epigenome drives chromatin folding and dynamics, insights from efficient coarse-grained models of chromosomes.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006159

By:

Ghosh, Surya K.;
Jost, Daniel

Publication type:

Article

Optimizing the learning rate for adaptive estimation of neural encoding models.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006168

By:

Hsieh, Han-Lin;
Shanechi, Maryam M.

Publication type:

Article

Design of optimal nonlinear network controllers for Alzheimer's disease.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006136

By:

Sanchez-Rodriguez, Lazaro M.;
Iturria-Medina, Yasser;
Baines, Erica A.;
Mallo, Sabela C.;
Dousty, Mehdy;
Sotero, Roberto C.;
null, null

Publication type:

Article

The complex ecosystem in non small cell lung cancer invasion.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006131

By:

Haney, Seth;
Konen, Jessica;
Marcus, Adam I.;
Bazhenov, Maxim

Publication type:

Article

Systematic interrogation of diverse Omic data reveals interpretable, robust, and generalizable transcriptomic features of clinically successful therapeutic targets.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006142

By:

Rouillard, Andrew D.;
Hurle, Mark R.;
Agarwal, Pankaj

Publication type:

Article

Firing-rate based network modeling of the dLGN circuit: Effects of cortical feedback on spatiotemporal response properties of relay cells.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006156

By:

Mobarhan, Milad Hobbi;
Halnes, Geir;
Martínez-Cañada, Pablo;
Hafting, Torkel;
Fyhn, Marianne;
Einevoll, Gaute T.

Publication type:

Article

Enzyme sequestration by the substrate: An analysis in the deterministic and stochastic domains.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006107

By:

Petrides, Andreas;
Vinnicombe, Glenn

Publication type:

Article

2018 ISCB accomplishments by a senior scientist award.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006138

By:

Fogg, Christiana N.;
Kovats, Diane E.;
Shamir, Ron

Publication type:

Article

Polymorphic sites preferentially avoid co-evolving residues in MHC class I proteins.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006188

By:

Dib, Linda;
Salamin, Nicolas;
Gfeller, David

Publication type:

Article

Atomic resolution mechanism of ligand binding to a solvent inaccessible cavity in T4 lysozyme.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006180

By:

Mondal, Jagannath;
Ahalawat, Navjeet;
Pandit, Subhendu;
Vallurupalli, Pramodh;
Kay, Lewis E.

Publication type:

Article

Implications for human odor sensing revealed from the statistics of odorant-receptor interactions.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006175

By:

Bak, Ji Hyun;
Jang, Seogjoo J.;
Hyeon, Changbong

Publication type:

Article

Community-based benchmarking improves spike rate inference from two-photon calcium imaging data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006157

By:

Berens, Philipp;
Freeman, Jeremy;
Deneux, Thomas;
Chenkov, Nicolay;
McColgan, Thomas;
Speiser, Artur;
Macke, Jakob H.;
Turaga, Srinivas C.;
Mineault, Patrick;
Rupprecht, Peter;
Gerhard, Stephan;
Friedrich, Rainer W.;
Friedrich, Johannes;
Paninski, Liam;
Pachitariu, Marius;
Harris, Kenneth D.;
Bolte, Ben;
Machado, Timothy A.;
Ringach, Dario;
Stone, Jasmine

Publication type:

Article

Potassium and sodium microdomains in thin astroglial processes: A computational model study.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006151

By:

Breslin, Kevin;
Wade, John Joseph;
Harkin, Jim;
Flanagan, Bronac;
McDaid, Liam;
Wong-Lin, KongFatt;
Van Zalinge, Harm;
Hall, Steve;
Walker, Matthew;
Verkhratsky, Alexei

Publication type:

Article

2018 outstanding contributions to ISCB award: Russ Altman.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006140

By:

Fogg, Christiana N.;
Kovats, Diane E.;
Shamir, Ron

Publication type:

Article

Near real-time forecasting for cholera decision making in Haiti after Hurricane Matthew.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006127

By:

Pasetto, Damiano;
Finger, Flavio;
Camacho, Anton;
Grandesso, Francesco;
Cohuet, Sandra;
Lemaitre, Joseph C.;
Azman, Andrew S.;
Luquero, Francisco J.;
Bertuzzo, Enrico;
Rinaldo, Andrea

Publication type:

Article

A loop-counting method for covariate-corrected low-rank biclustering of gene-expression and genome-wide association study data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006105

By:

Rangan, Aaditya V.;
McGrouther, Caroline C.;
Kelsoe, John;
Schork, Nicholas;
Stahl, Eli;
Zhu, Qian;
Krishnan, Arjun;
Yao, Vicky;
Troyanskaya, Olga;
Bilaloglu, Seda;
Raghavan, Preeti;
Bergen, Sarah;
Jureus, Anders;
Landen, Mikael;
null, null

Publication type:

Article

Porcupine: A visual pipeline tool for neuroimaging analysis.

Published in:

2018

By:

van Mourik, Tim;
Snoek, Lukas;
Knapen, Tomas;
Norris, David G.

Publication type:

Abstract

How stimulation frequency and intensity impact on the long-lasting effects of coordinated reset stimulation.

Published in:

2018

By:

Manos, Thanos;
Zeitler, Magteld;
Tass, Peter A.

Publication type:

Abstract

Bi-stability in cooperative transport by ants in the presence of obstacles.

Published in:

2018

By:

Ron, Jonathan E.;
Pinkoviezky, Itai;
Fonio, Ehud;
Feinerman, Ofer;
Gov, Nir S.

Publication type:

Abstract

Nonlinear decoding of a complex movie from the mammalian retina.

Published in:

2018

By:

Botella-Soler, Vicente;
Deny, Stéphane;
Martius, Georg;
Marre, Olivier;
Tkačik, Gašper

Publication type:

Abstract

Differential T cell response against BK virus regulatory and structural antigens: A viral dynamics modelling approach.

Published in:

2018

By:

Blazquez-Navarro, Arturo;
Schachtner, Thomas;
Stervbo, Ulrik;
Sefrin, Anett;
Stein, Maik;
Westhoff, Timm H.;
Reinke, Petra;
Klipp, Edda;
Babel, Nina;
Neumann, Avidan U.;
Or-Guil, Michal

Publication type:

Abstract

The AmP project: Comparing species on the basis of dynamic energy budget parameters.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006100

By:

Marques, Gonçalo M.;
Augustine, Starrlight;
Lika, Konstadia;
Pecquerie, Laure;
Domingos, Tiago;
Kooijman, Sebastiaan A. L. M.

Publication type:

Article

Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006088

By:

MacGilvray, Matthew E.;
Shishkova, Evgenia;
Chasman, Deborah;
Place, Michael;
Gitter, Anthony;
Coon, Joshua J.;
Gasch, Audrey P.

Publication type:

Article

Art in Science Competition invites artworks to the annual exhibition on ISMB 2018 in Chicago.

Published in:

2018

By:

Frenkel-Morgenstern, Milana;
Welch, Lonnie;
Gaeta, Bruno;
Kovats, Diane E.

Publication type:

Proceeding

Functional triplet motifs underlie accurate predictions of single-trial responses in populations of tuned and untuned V1 neurons.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006153

By:

Dechery, Joseph B.;
MacLean, Jason N.

Publication type:

Article

Differential polarization of cortical pyramidal neuron dendrites through weak extracellular fields.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006124

By:

Aspart, Florian;
Remme, Michiel W. H.;
Obermayer, Klaus

Publication type:

Article

Assessing the public health impact of tolerance-based therapies with mathematical models.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006119

By:

Hozé, Nathanaël;
Bonhoeffer, Sebastian;
Regoes, Roland

Publication type:

Article

Predictive modelling of a novel anti-adhesion therapy to combat bacterial colonisation of burn wounds.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006071

By:

Roberts, Paul A.;
Huebinger, Ryan M.;
Keen, Emma;
Krachler, Anne-Marie;
Jabbari, Sara

Publication type:

Article

beachmat: A Bioconductor C++ API for accessing high-throughput biological data from a variety of R matrix types.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006135

By:

Lun, Aaron T. L.;
Pagès, Hervé;
Smith, Mike L.

Publication type:

Article

Identification of animal behavioral strategies by inverse reinforcement learning.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006122

By:

Yamaguchi, Shoichiro;
Naoki, Honda;
Ikeda, Muneki;
Tsukada, Yuki;
Nakano, Shunji;
Mori, Ikue;
Ishii, Shin

Publication type:

Article

Topological and statistical analyses of gene regulatory networks reveal unifying yet quantitatively different emergent properties.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006098

By:

Ouma, Wilberforce Zachary;
Pogacar, Katja;
Grotewold, Erich

Publication type:

Article

Estimation of the dispersal distances of an aphid-borne virus in a patchy landscape.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006085

By:

Pleydell, David R. J.;
Soubeyrand, Samuel;
Dallot, Sylvie;
Labonne, Gérard;
Chadœuf, Joël;
Jacquot, Emmanuel;
Thébaud, Gaël

Publication type:

Article

Automated evaluation of quaternary structures from protein crystals.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006104

By:

Bliven, Spencer;
Lafita, Aleix;
Parker, Althea;
Capitani, Guido;
Duarte, Jose M.

Publication type:

Article

Quantitative analysis reveals crosstalk mechanisms of heat shock-induced attenuation of NF-κB signaling at the single cell level.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006130

By:

Kardyńska, Małgorzata;
Paszek, Anna;
Śmieja, Jarosław;
Spiller, David;
Widłak, Wiesława;
White, Michael R. H.;
Paszek, Pawel;
Kimmel, Marek

Publication type:

Article