Works matching IS 1553734X AND DT 2017 AND VI 13 AND IP 9

Results: 50

Multi-layer network utilizing rewarded spike time dependent plasticity to learn a foraging task.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005705

By:

Sanda, Pavel;
Skorheim, Steven;
Bazhenov, Maxim

Publication type:

Article

Features of spatial and functional segregation and integration of the primate connectome revealed by trade-off between wiring cost and efficiency.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005776

By:

Chen, Yuhan;
Wang, Shengjun;
Hilgetag, Claus C.;
Zhou, Changsong

Publication type:

Article

A composite network of conserved and tissue specific gene interactions reveals possible genetic interactions in glioma.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005739

By:

Voigt, André;
Nowick, Katja;
Almaas, Eivind

Publication type:

Article

Interactions between the tumor and the blood systemic response of breast cancer patients.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005680

By:

Dumeaux, Vanessa;
Fjukstad, Bjørn;
Fjosne, Hans E.;
Frantzen, Jan-Ole;
Holmen, Marit Muri;
Rodegerdts, Enno;
Schlichting, Ellen;
Børresen-Dale, Anne-Lise;
Bongo, Lars Ailo;
Lund, Eiliv;
Hallett, Michael

Publication type:

Article

Flexibility to contingency changes distinguishes habitual and goal-directed strategies in humans.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005753

By:

Lee, Julie J.;
Keramati, Mehdi

Publication type:

Article

A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell growth: The WarburQ effect.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005758

By:

Damiani, Chiara;
Colombo, Riccardo;
Gaglio, Daniela;
Mastroianni, Fabrizia;
Pescini, Dario;
Westerhoff, Hans Victor;
Mauri, Giancarlo;
Vanoni, Marco;
Alberghina, Lilia

Publication type:

Article

Ten simple rules for structuring papers.

Published in:

2017

By:

Mensh, Brett;
Kording, Konrad

Publication type:

Editorial

Exploiting ecology in drug pulse sequences in favour of population reduction.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005747

By:

Bauer, Marianne;
Graf, Isabella R.;
Ngampruetikorn, Vudtiwat;
Stephens, Greg J.;
Frey, Erwin

Publication type:

Article

Infectious reactivation of cytomegalovirus explaining age- and sex-specific patterns of seroprevalence.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005719

By:

van Boven, Michiel;
van de Kassteele, Jan;
Korndewal, Marjolein J.;
van Dorp, Christiaan H.;
Kretzschmar, Mirjam;
van der Klis, Fiona;
de Melker, Hester E.;
Vossen, Ann C.;
van Baarle, Debbie

Publication type:

Article

Predictive representations can link model-based reinforcement learning to model-free mechanisms.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005768

By:

Russek, Evan M.;
Momennejad, Ida;
Daw, Nathaniel D.;
Botvinick, Matthew M.;
Gershman, Samuel J.

Publication type:

Article

Phase changes in neuronal postsynaptic spiking due to short term plasticity.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005634

By:

McDonnell, Mark D.;
Graham, Bruce P.

Publication type:

Article

Spatiotemporal network coding of physiological mossy fiber inputs by the cerebellar granular layer.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005754

By:

Sudhakar, Shyam Kumar;
Hong, Sungho;
Raikov, Ivan;
Publio, Rodrigo;
Lang, Claus;
Close, Thomas;
Guo, Daqing;
Negrello, Mario;
De Schutter, Erik

Publication type:

Article

Probabilistic models for neural populations that naturally capture global coupling and criticality.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005763

By:

Humplik, Jan;
Tkačik, Gašper

Publication type:

Article

Correlated receptor transport processes buffer single-cell heterogeneity.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005779

By:

Kallenberger, Stefan M.;
Eils, Roland;
Unger, Anne L.;
Lymperopoulos, Konstantinos;
Herten, Dirk-Peter;
Legewie, Stefan;
Klingmüller, Ursula

Publication type:

Article

Correction: Multiscale Approach to the Determination of the Photoactive Yellow Protein Signaling State Ensemble.

Published in:

2017

By:

null, null

Publication type:

Correction Notice

Relating dynamic brain states to dynamic machine states: Human and machine solutions to the speech recognition problem.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005617

By:

Wingfield, Cai;
Thwaites, Andrew;
Fonteneau, Elisabeth;
Marslen-Wilson, William D.;
Su, Li;
Liu, Xunying;
Zhang, Chao;
Woodland, Phil

Publication type:

Article

Force encoding in muscle spindles during stretch of passive muscle.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005767

By:

Blum, Kyle P.;
Ting, Lena H.;
Lamotte D'Incamps, Boris;
Zytnicki, Daniel

Publication type:

Article

Altering neuronal excitability to preserve network connectivity in a computational model of Alzheimer's disease.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005707

By:

de Haan, Willem;
van Straaten, Elisabeth C. W.;
Gouw, Alida A.;
Stam, Cornelis J.

Publication type:

Article

Ten simple rules for successfully completing a graduate degree in Latin America.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005682

By:

Ruelas Inzunza, Ernesto;
Salazar-Rivera, Gabriela I.;
Láinez, Magdiel;
Ruiz-Gómez, María Guadalupe;
Domínguez-Eusebio, Carlo A.;
Cristóbal-Sánchez, Griselda;
Teodosio Faustino, Issaac A.;
Pérez-López, Edel;
Campbell, Meagan L.;
Merfa, Marcus Vinicius;
Latorre Beltrán, Ivonne Tatiana;
Armas, Fernanda;
Mota-Vargas, Claudio

Publication type:

Article

Limited synapse overproduction can speed development but sometimes with long-term energy and discrimination penalties.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005750

By:

Ju, Harang;
Colbert, Costa M.;
Levy, William B.

Publication type:

Article

C-reactive protein upregulates the whole blood expression of CD59 - an integrative analysis.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005766

By:

Lepik, Kaido;
Annilo, Tarmo;
Kukuškina, Viktorija;
Kisand, Kai;
Kutalik, Zoltán;
Peterson, Pärt;
Peterson, Hedi;
null, null

Publication type:

Article

The logic of the floral transition: Reverse-engineering the switch controlling the identity of lateral organs.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005744

By:

Dinh, Jean-Louis;
Farcot, Etienne;
Hodgman, Charlie

Publication type:

Article

How can computation advance microbiome research?

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005547

By:

Nussinov, Ruth;
Papin, Jason A.

Publication type:

Article

Ten simple rules for developing a mentor–mentee expectations document.

Published in:

2017

By:

Masters, Kristyn S.;
Kreeger, Pamela K.

Publication type:

Editorial

Stochastic principles governing alternative splicing of RNA.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005761

By:

Hu, Jianfei;
Boritz, Eli;
Wylie, William;
Douek, Daniel C.

Publication type:

Article

Correction: Dose-response relationships for environmentally mediated infectious disease transmission models.

Published in:

2017

By:

null, null

Publication type:

Correction Notice

Probing eukaryotic cell mechanics via mesoscopic simulations.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005726

By:

Lykov, Kirill;
Nematbakhsh, Yasaman;
Shang, Menglin;
Lim, Chwee Teck;
Pivkin, Igor V.

Publication type:

Article

The eBioKit, a stand-alone educational platform for bioinformatics.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005616

By:

Hernández-de-Diego, Rafael;
de Villiers, Etienne P.;
Klingström, Tomas;
Gourlé, Hadrien;
Conesa, Ana;
Bongcam-Rudloff, Erik

Publication type:

Article

Correction: lumpGEM: Systematic generation of subnetworks and elementally balanced lumped reactions for the biosynthesis of target metabolites.

Published in:

2017

By:

null, null

Publication type:

Correction Notice

Sequence features of viral and human Internal Ribosome Entry Sites predictive of their activity.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005734

By:

Gritsenko, Alexey A.;
Weingarten-Gabbay, Shira;
Elias-Kirma, Shani;
Nir, Ronit;
de Ridder, Dick;
Segal, Eran

Publication type:

Article

Mathematical modeling and quantitative analysis of HIV-1 Gag trafficking and polymerization.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005733

By:

Liu, Yuewu;
Zou, Xiufen

Publication type:

Article

Quantifying the effects of antiangiogenic and chemotherapy drug combinations on drug delivery and treatment efficacy.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005724

By:

Yonucu, Sirin;
Yιlmaz, Defne;
Phipps, Colin;
Unlu, Mehmet Burcin;
Kohandel, Mohammad

Publication type:

Article

Synthesizing developmental trajectories.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005742

By:

Villoutreix, Paul;
Andén, Joakim;
Lim, Bomyi;
Lu, Hang;
Kevrekidis, Ioannis G.;
Singer, Amit;
Shvartsman, Stanislav Y.

Publication type:

Article

Reconstructing promoter activity from Lux bioluminescent reporters.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005731

By:

Iqbal, Mudassar;
Doherty, Neil;
Page, Anna M. L.;
Qazi, Saara N. A.;
Ajmera, Ishan;
Lund, Peter A.;
Kypraios, Theodore;
Scott, David J.;
Hill, Philip J.;
Stekel, Dov J.

Publication type:

Article

Modeling antibiotic treatment in hospitals: A systematic approach shows benefits of combination therapy over cycling, mixing, and mono-drug therapies.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005745

By:

Tepekule, Burcu;
Uecker, Hildegard;
Derungs, Isabel;
Frenoy, Antoine;
Bonhoeffer, Sebastian

Publication type:

Article

Analysis of the relationship between coexpression domains and chromatin 3D organization.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005708

By:

Soler-Oliva, María E.;
Guerrero-Martínez, Jose A.;
Bachetti, Valentina;
Reyes, Jose C.

Publication type:

Article

Projecting social contact matrices in 152 countries using contact surveys and demographic data.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005697

By:

Prem, Kiesha;
Cook, Alex R.;
Jit, Mark

Publication type:

Article

Cost-efficient vaccination protocols for network epidemiology.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005696

By:

Holme, Petter;
Litvak, Nelly

Publication type:

Article

Exploring the inhibition mechanism of adenylyl cyclase type 5 by n-terminal myristoylated Gαi1.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005673

By:

Van Keulen, Siri Camee;
Rothlisberger, Ursula

Publication type:

Article

Allosteric conformational change cascade in cytoplasmic dynein revealed by structure-based molecular simulations.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005748

By:

Kubo, Shintaroh;
Li, Wenfei;
Takada, Shoji

Publication type:

Article

Mobility can promote the evolution of cooperation via emergent self-assortment dynamics.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005732

By:

Joshi, Jaideep;
Couzin, Iain D;
Levin, Simon A;
Guttal, Vishwesha

Publication type:

Article

Funneled potential and flux landscapes dictate the stabilities of both the states and the flow: Fission yeast cell cycle.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005710

By:

Luo, Xiaosheng;
Xu, Liufang;
Han, Bo;
Wang, Jin

Publication type:

Article

Population FBA predicts metabolic phenotypes in yeast.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005728

By:

Labhsetwar, Piyush;
Melo, Marcelo C. R.;
Cole, John A.;
Luthey-Schulten, Zaida

Publication type:

Article

Two passive mechanical conditions modulate power generation by the outer hair cells.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005701

By:

Liu, Yanju;
Gracewski, Sheryl M.;
Nam, Jong-Hoon

Publication type:

Article

kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005727

By:

Murray, Kevin D.;
Webers, Christfried;
Ong, Cheng Soon;
Borevitz, Justin;
Warthmann, Norman

Publication type:

Article

DeepPep: Deep proteome inference from peptide profiles.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005661

By:

Kim, Minseung;
Eetemadi, Ameen;
Tagkopoulos, Ilias

Publication type:

Article

Estimating short-term synaptic plasticity from pre- and postsynaptic spiking.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005738

By:

Ghanbari, Abed;
Malyshev, Aleksey;
Volgushev, Maxim;
Stevenson, Ian H.

Publication type:

Article

A single Markov-type kinetic model accounting for the macroscopic currents of all human voltage-gated sodium channel isoforms.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005737

By:

Balbi, Pietro;
Massobrio, Paolo;
Hellgren Kotaleski, Jeanette

Publication type:

Article

Differential receptive field organizations give rise to nearly identical neural correlations across three parallel sensory maps in weakly electric fish.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005716

By:

Hofmann, Volker;
Chacron, Maurice J.

Publication type:

Article

A conceptual and computational framework for modelling and understanding the non-equilibrium gene regulatory networks of mouse embryonic stem cells.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pcbi.1005713

By:

Greaves, Richard B.;
Dietmann, Sabine;
Smith, Austin;
Stepney, Susan;
Halley, Julianne D.

Publication type:

Article