Works matching IS 1553734X AND DT 2017 AND VI 13 AND IP 8

Results: 40

Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005725

By:

Bassani-Sternberg, Michal;
Chong, Chloé;
Guillaume, Philippe;
Solleder, Marthe;
Pak, HuiSong;
Gannon, Philippe O.;
Kandalaft, Lana E.;
Coukos, George;
Gfeller, David

Publication type:

Article

A stochastic-field description of finite-size spiking neural networks.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005691

By:

Dumont, Grégory;
Payeur, Alexandre;
Longtin, André

Publication type:

Article

Spread of hospital-acquired infections: A comparison of healthcare networks.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005666

By:

Nekkab, Narimane;
Astagneau, Pascal;
Temime, Laura;
Crépey, Pascal

Publication type:

Article

Stabilization of diastolic calcium signal via calcium pump regulation of complex local calcium releases and transient decay in a computational model of cardiac pacemaker cell with individual release channels.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005675

By:

Maltsev, Alexander V.;
Maltsev, Victor A.;
Stern, Michael D.

Publication type:

Article

Mouth-clicks used by blind expert human echolocators – signal description and model based signal synthesis.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005670

By:

Thaler, Lore;
Reich, Galen M.;
Zhang, Xinyu;
Wang, Dinghe;
Smith, Graeme E.;
Tao, Zeng;
Abdullah, Raja Syamsul Azmir Bin. Raja;
Cherniakov, Mikhail;
Baker, Christopher J.;
Kish, Daniel;
Antoniou, Michail

Publication type:

Article

Polymodal allosteric regulation of Type 1 Serine/Threonine Kinase Receptors via a conserved electrostatic lock.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005711

By:

Botello-Smith, Wesley M.;
Alsamarah, Abdelaziz;
Chatterjee, Payal;
Xie, Chen;
Lacroix, Jerome J.;
Hao, Jijun;
Luo, Yun

Publication type:

Article

A computational model of spatio-temporal cardiac intracellular calcium handling with realistic structure and spatial flux distribution from sarcoplasmic reticulum and t-tubule reconstructions.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005714

By:

Colman, Michael A.;
Pinali, Christian;
Trafford, Andrew W.;
Zhang, Henggui;
Kitmitto, Ashraf

Publication type:

Article

Domain-based prediction of the human isoform interactome provides insights into the functional impact of alternative splicing.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005717

By:

Ghadie, Mohamed Ali;
Lambourne, Luke;
Vidal, Marc;
Xia, Yu

Publication type:

Article

A method of determining where to target surveillance efforts in heterogeneous epidemiological systems.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005712

By:

Mastin, Alexander J.;
van den Bosch, Frank;
Gottwald, Timothy R.;
Alonso Chavez, Vasthi;
Parnell, Stephen R.

Publication type:

Article

HLA class I haplotype diversity is consistent with selection for frequent existing haplotypes.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005693

By:

Alter, Idan;
Gragert, Loren;
Fingerson, Stephanie;
Maiers, Martin;
Louzoun, Yoram

Publication type:

Article

Noise correlations in the human brain and their impact on pattern classification.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005674

By:

Bejjanki, Vikranth R.;
da Silveira, Rava Azeredo;
Cohen, Jonathan D.;
Turk-Browne, Nicholas B.

Publication type:

Article

Towards a category theory approach to analogy: Analyzing re-representation and acquisition of numerical knowledge.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005683

By:

Navarrete, Jairo A.;
Dartnell, Pablo

Publication type:

Article

Robust averaging protects decisions from noise in neural computations.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005723

By:

Li, Vickie;
Herce Castañón, Santiago;
Solomon, Joshua A.;
Vandormael, Hildward;
Summerfield, Christopher

Publication type:

Article

From homeostasis to behavior: Balanced activity in an exploration of embodied dynamic environmental-neural interaction.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005721

By:

Hellyer, Peter John;
Clopath, Claudia;
Kehagia, Angie A.;
Turkheimer, Federico E.;
Leech, Robert

Publication type:

Article

Histologic and biochemical alterations predict pulmonary mechanical dysfunction in aging mice with chronic lung inflammation.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005570

By:

Massa, Christopher B.;
Groves, Angela M.;
Jaggernauth, Smita U.;
Laskin, Debra L.;
Gow, Andrew J.

Publication type:

Article

Data driven flexible backbone protein design.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005722

By:

Sun, Mark G. F.;
Kim, Philip M.

Publication type:

Article

Temperature manipulation of neuronal dynamics in a forebrain motor control nucleus.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005699

By:

Goldin, Matías A.;
Mindlin, Gabriel B.

Publication type:

Article

Limb-Enhancer Genie: An accessible resource of accurate enhancer predictions in the developing limb.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005720

By:

Monti, Remo;
Barozzi, Iros;
Osterwalder, Marco;
Lee, Elizabeth;
Kato, Momoe;
Garvin, Tyler H.;
Plajzer-Frick, Ingrid;
Pickle, Catherine S.;
Akiyama, Jennifer A.;
Afzal, Veena;
Beerenwinkel, Niko;
Dickel, Diane E.;
Visel, Axel;
Pennacchio, Len A.

Publication type:

Article

Neuron’s eye view: Inferring features of complex stimuli from neural responses.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005645

By:

Chen, Xin;
Beck, Jeffrey M.;
Pearson, John M.

Publication type:

Article

Host population structure impedes reversion to drug sensitivity after discontinuation of treatment.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005704

By:

Liechti, Jonas I.;
Leventhal, Gabriel E.;
Bonhoeffer, Sebastian

Publication type:

Article

Computational-experimental approach to drug-target interaction mapping: A case study on kinase inhibitors.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005678

By:

Cichonska, Anna;
Ravikumar, Balaguru;
Parri, Elina;
Timonen, Sanna;
Pahikkala, Tapio;
Airola, Antti;
Wennerberg, Krister;
Rousu, Juho;
Aittokallio, Tero

Publication type:

Article

Spatial dynamics of synthetic microbial mutualists and their parasites.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005689

By:

Amor, Daniel R.;
Montañez, Raúl;
Duran-Nebreda, Salva;
Solé, Ricard

Publication type:

Article

Revisiting chemoaffinity theory: Chemotactic implementation of topographic axonal projection.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005702

By:

Naoki, Honda

Publication type:

Article

Extracting replicable associations across multiple studies: Empirical Bayes algorithms for controlling the false discovery rate.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005700

By:

Amar, David;
Shamir, Ron;
Yekutieli, Daniel

Publication type:

Article

Multidomain analyses of a longitudinal human microbiome intestinal cleanout perturbation experiment.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005706

By:

Fukuyama, Julia;
Rumker, Laurie;
Sankaran, Kris;
Jeganathan, Pratheepa;
Dethlefsen, Les;
Relman, David A.;
Holmes, Susan P.

Publication type:

Article

Efficient and accurate causal inference with hidden confounders from genome-transcriptome variation data.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005703

By:

Wang, Lingfei;
Michoel, Tom

Publication type:

Article

Comparing efficacies of moxifloxacin, levofloxacin and gatifloxacin in tuberculosis granulomas using a multi-scale systems pharmacology approach.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005650

By:

Pienaar, Elsje;
Sarathy, Jansy;
Prideaux, Brendan;
Dietzold, Jillian;
Dartois, Véronique;
Kirschner, Denise E.;
Linderman, Jennifer J.

Publication type:

Article

The application of project-based learning in bioinformatics training.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005620

By:

Emery, Laura R.;
Morgan, Sarah L.

Publication type:

Article

Ten simple rules for getting the most out of a summer laboratory internship.

Published in:

2017

By:

Aicher, Toby P.;
Barabási, Dániel L.;
Harris, Benjamin D.;
Nadig, Ajay;
Williams, Kaitlin L.

Publication type:

Editorial

An optimal strategy for epilepsy surgery: Disruption of the rich-club?

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005637

By:

Lopes, Marinho A.;
Richardson, Mark P.;
Abela, Eugenio;
Rummel, Christian;
Schindler, Kaspar;
Goodfellow, Marc;
Terry, John R.

Publication type:

Article

Ten simple rules to initiate and run a postdoctoral association.

Published in:

2017

By:

Bruckmann, Chiara;
Sebestyén, Endre

Publication type:

Editorial

A systems approach reveals distinct metabolic strategies among the NCI-60 cancer cell lines.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005698

By:

Aurich, Maike K.;
Fleming, Ronan M. T.;
Thiele, Ines

Publication type:

Article

Confirmation bias in human reinforcement learning: Evidence from counterfactual feedback processing.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005684

By:

Palminteri, Stefano;
Lefebvre, Germain;
Kilford, Emma J.;
Blakemore, Sarah-Jayne

Publication type:

Article

Multi-scale approaches for high-speed imaging and analysis of large neural populations.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005685

By:

Friedrich, Johannes;
Yang, Weijian;
Soudry, Daniel;
Mu, Yu;
Ahrens, Misha B.;
Yuste, Rafael;
Peterka, Darcy S.;
Paninski, Liam

Publication type:

Article

Quantification of transplant-derived circulating cell-free DNA in absence of a donor genotype.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005629

By:

Sharon, Eilon;
Shi, Hao;
Kharbanda, Sandhya;
Koh, Winston;
Martin, Lance R.;
Khush, Kiran K.;
Valantine, Hannah;
Pritchard, Jonathan K.;
De Vlaminck, Iwijn

Publication type:

Article

Measuring distance through dense weighted networks: The case of hospital-associated pathogens.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005622

By:

Donker, Tjibbe;
Smieszek, Timo;
Henderson, Katherine L.;
Johnson, Alan P.;
Walker, A. Sarah;
Robotham, Julie V.

Publication type:

Article

A model of human motor sequence learning explains facilitation and interference effects based on spike-timing dependent plasticity.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005632

By:

Wang, Quan;
Rothkopf, Constantin A.;
Triesch, Jochen

Publication type:

Article

Bow-tie signaling in c-di-GMP: Machine learning in a simple biochemical network.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005677

By:

Yan, Jinyuan;
Deforet, Maxime;
Boyle, Kerry E.;
Rahman, Rayees;
Liang, Raymond;
Okegbe, Chinweike;
Dietrich, Lars E. P.;
Qiu, Weigang;
Xavier, Joao B.

Publication type:

Article

Rearrangement moves on rooted phylogenetic networks.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005611

By:

Gambette, Philippe;
Van Iersel, Leo;
Jones, Mark;
Lafond, Manuel;
Pardi, Fabio;
Scornavacca, Celine

Publication type:

Article

The Stochastic Early Reaction, Inhibition, and late Action (SERIA) model for antisaccades.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005692

By:

Aponte, Eduardo A.;
Schöbi, Dario;
Stephan, Klaas E.;
Heinzle, Jakob

Publication type:

Article