Works matching IS 1553734X AND DT 2017 AND VI 13 AND IP 6

Results: 57

2017 ISCB Accomplishment by a Senior Scientist Award given to Pavel Pevzner.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005561

By:

Fogg, Christiana N.;
Kovats, Diane E.;
Berger, Bonnie

Publication type:

Article

2017 ISCB Innovator Award: Aviv Regev.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005558

By:

Fogg, Christiana N.;
Kovats, Diane E.;
Berger, Bonnie

Publication type:

Article

Independent regulation of gene expression level and noise by histone modifications.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005585

By:

Wu, Shaohuan;
Li, Ke;
Li, Yingshu;
Zhao, Tong;
Li, Ting;
Yang, Yu-Fei;
Qian, Wenfeng

Publication type:

Article

Active Vertex Model for cell-resolution description of epithelial tissue mechanics.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005569

By:

Barton, Daniel L.;
Henkes, Silke;
Weijer, Cornelis J.;
Sknepnek, Rastko

Publication type:

Article

2017 ISCB Overton Prize awarded to Christoph Bock.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005559

By:

Fogg, Christiana N.;
Kovats, Diane E.;
Berger, Bonnie

Publication type:

Article

2017 Outstanding Contributions to ISCB Award: Fran Lewitter.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005560

By:

Fogg, Christiana N.;
Kovats, Diane E.;
Berger, Bonnie

Publication type:

Article

Detecting similar binding pockets to enable systems polypharmacology.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005522

By:

Duran-Frigola, Miquel;
Siragusa, Lydia;
Ruppin, Eytan;
Barril, Xavier;
Cruciani, Gabriele;
Aloy, Patrick

Publication type:

Article

Landscape and variation of novel retroduplications in 26 human populations.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005567

By:

Zhang, Yan;
Li, Shantao;
Abyzov, Alexej;
Gerstein, Mark B.

Publication type:

Article

Optimal structure of metaplasticity for adaptive learning.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005630

By:

Khorsand, Peyman;
Soltani, Alireza

Publication type:

Article

NetNorM: Capturing cancer-relevant information in somatic exome mutation data with gene networks for cancer stratification and prognosis.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005573

By:

Le Morvan, Marine;
Zinovyev, Andrei;
Vert, Jean-Philippe

Publication type:

Article

MFPred: Rapid and accurate prediction of protein-peptide recognition multispecificity using self-consistent mean field theory.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005614

By:

Rubenstein, Aliza B.;
Pethe, Manasi A.;
Khare, Sagar D.

Publication type:

Article

Low-dimensional spike rate models derived from networks of adaptive integrate-and-fire neurons: Comparison and implementation.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005545

By:

Augustin, Moritz;
Ladenbauer, Josef;
Baumann, Fabian;
Obermayer, Klaus

Publication type:

Article

Linking structure and activity in nonlinear spiking networks.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005583

By:

Ocker, Gabriel Koch;
Josić, Krešimir;
Shea-Brown, Eric;
Buice, Michael A.

Publication type:

Article

Comorbidities in the diseasome are more apparent than real: What Bayesian filtering reveals about the comorbidities of depression.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005487

By:

Marx, Peter;
Antal, Peter;
Bolgar, Bence;
Bagdy, Gyorgy;
Deakin, Bill;
Juhasz, Gabriella

Publication type:

Article

A novel algorithm identifies stress-induced alterations in mitochondrial connectivity and inner membrane structure from confocal images.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005612

By:

Ouellet, Mathieu;
Guillebaud, Gérald;
Gervais, Valerie;
Lupien St-Pierre, David;
Germain, Marc

Publication type:

Article

Olfactory learning without the mushroom bodies: Spiking neural network models of the honeybee lateral antennal lobe tract reveal its capacities in odour memory tasks of varied complexities.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005551

By:

MaBouDi, HaDi;
Shimazaki, Hideaki;
Giurfa, Martin;
Chittka, Lars

Publication type:

Article

Good enough practices in scientific computing.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005510

By:

Wilson, Greg;
Bryan, Jennifer;
Cranston, Karen;
Kitzes, Justin;
Nederbragt, Lex;
Teal, Tracy K.

Publication type:

Article

Transmembrane helical interactions in the CFTR channel pore.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005594

By:

Das, Jhuma;
Aleksandrov, Andrei A.;
Cui, Liying;
He, Lihua;
Riordan, John R.;
Dokholyan, Nikolay V.

Publication type:

Article

Brain network eigenmodes provide a robust and compact representation of the structural connectome in health and disease.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005550

By:

Wang, Maxwell B.;
Owen, Julia P.;
Mukherjee, Pratik;
Raj, Ashish

Publication type:

Article

Sensory noise predicts divisive reshaping of receptive fields.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005582

By:

Chalk, Matthew;
Masset, Paul;
Gutkin, Boris;
Deneve, Sophie

Publication type:

Article

Boolean analysis reveals systematic interactions among low-abundance species in the human gut microbiome.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005361

By:

Claussen, Jens Christian;
Skiecevičienė, Jurgita;
Wang, Jun;
Rausch, Philipp;
Karlsen, Tom H.;
Lieb, Wolfgang;
Baines, John F.;
Franke, Andre;
Hütt, Marc-Thorsten

Publication type:

Article

High-confidence assessment of functional impact of human mitochondrial non-synonymous genome variations by APOGEE.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005628

By:

Castellana, Stefano;
Fusilli, Caterina;
Mazzoccoli, Gianluigi;
Biagini, Tommaso;
Capocefalo, Daniele;
Carella, Massimo;
Vescovi, Angelo Luigi;
Mazza, Tommaso

Publication type:

Article

Solving the influence maximization problem reveals regulatory organization of the yeast cell cycle.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005591

By:

Gibbs, David L.;
Shmulevich, Ilya

Publication type:

Article

An efficient coding theory for a dynamic trajectory predicts non-uniform allocation of entorhinal grid cells to modules.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005597

By:

Mosheiff, Noga;
Agmon, Haggai;
Moriel, Avraham;
Burak, Yoram

Publication type:

Article

In silico assessment of genetic variation in KCNA5 reveals multiple mechanisms of human atrial arrhythmogenesis.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005587

By:

Colman, Michael A.;
Ni, Haibo;
Liang, Bo;
Schmitt, Nicole;
Zhang, Henggui

Publication type:

Article

LASSIM—A network inference toolbox for genome-wide mechanistic modeling.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005608

By:

Magnusson, Rasmus;
Mariotti, Guido Pio;
Köpsén, Mattias;
Lövfors, William;
Gawel, Danuta R.;
Jörnsten, Rebecka;
Linde, Jörg;
Nordling, Torbjörn;
Nyman, Elin;
Schulze, Sylvie;
Nestor, Colm E.;
Zhang, Huan;
Cedersund, Gunnar;
Benson, Mikael;
Tjärnberg, Andreas;
Gustafsson, Mika

Publication type:

Article

A knowledge-based T<sup>2</sup>-statistic to perform pathway analysis for quantitative proteomic data.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005601

By:

Lai, En-Yu;
Chen, Yi-Hau;
Wu, Kun-Pin

Publication type:

Article

GINOM: A statistical framework for assessing interval overlap of multiple genomic features.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005586

By:

Bryner, Darshan;
Criscione, Stephen;
Leith, Andrew;
Huynh, Quyen;
Huffer, Fred;
Neretti, Nicola

Publication type:

Article

Molecular determinants for the thermodynamic and functional divergence of uniporter GLUT1 and proton symporter XylE.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005603

By:

Ke, Meng;
Yuan, Yafei;
Jiang, Xin;
Yan, Nieng;
Gong, Haipeng

Publication type:

Article

Robust transmission of rate coding in the inhibitory Purkinje cell to cerebellar nuclei pathway in awake mice.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005578

By:

Abbasi, Samira;
Hudson, Amber E.;
Maran, Selva K.;
Cao, Ying;
Abbasi, Ataollah;
Heck, Detlef H.;
Jaeger, Dieter

Publication type:

Article

Inferring repeat-protein energetics from evolutionary information.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005584

By:

Espada, Rocío;
Parra, R. Gonzalo;
Mora, Thierry;
Walczak, Aleksandra M.;
Ferreiro, Diego U.

Publication type:

Article

Atrial arrhythmogenicity of KCNJ2 mutations in short QT syndrome: Insights from virtual human atria.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005593

By:

Whittaker, Dominic G.;
Ni, Haibo;
Harchi, Aziza El;
Hancox, Jules C.;
Zhang, Henggui

Publication type:

Article

Histone posttranslational modifications predict specific alternative exon subtypes in mammalian brain.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005602

By:

Hu, Qiwen;
Kim, Eun Ji;
Feng, Jian;
Grant, Gregory R.;
Heller, Elizabeth A.

Publication type:

Article

Rosetta:MSF: a modular framework for multi-state computational protein design.

Published in:

2017

By:

Löffler, Patrick;
Schmitz, Samuel;
Hupfeld, Enrico;
Sterner, Reinhard;
Merkl, Rainer

Publication type:

Product Review

Locking of correlated neural activity to ongoing oscillations.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005534

By:

Kühn, Tobias;
Helias, Moritz

Publication type:

Article

Mitochondrial respiration and ROS emission during β-oxidation in the heart an experimental-computational study.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005588

By:

Cortassa, Sonia;
Sollott, Steven J.;
Aon, Miguel A.

Publication type:

Article

Metabolic network segmentation: A probabilistic graphical modeling approach to identify the sites and sequential order of metabolic regulation from non-targeted metabolomics data.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005577

By:

Kuehne, Andreas;
Mayr, Urs;
Sévin, Daniel C.;
Claassen, Manfred;
Zamboni, Nicola

Publication type:

Article

Ribosome reinitiation can explain length-dependent translation of messenger RNA.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005592

By:

Rogers, David W.;
Böttcher, Marvin A.;
Traulsen, Arne;
Greig, Duncan

Publication type:

Article

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005595

By:

Wick, Ryan R.;
Judd, Louise M.;
Gorrie, Claire L.;
Holt, Kathryn E.

Publication type:

Article

Leveraging functional annotations in genetic risk prediction for human complex diseases.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005589

By:

Hu, Yiming;
Lu, Qiongshi;
Powles, Ryan;
Yao, Xinwei;
Yang, Can;
Fang, Fang;
Xu, Xinran;
Zhao, Hongyu

Publication type:

Article

Temperature–amplitude coupling for stable biological rhythms at different temperatures.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005501

By:

Kurosawa, Gen;
Fujioka, Atsuko;
Koinuma, Satoshi;
Mochizuki, Atsushi;
Shigeyoshi, Yasufumi

Publication type:

Article

Mendel,MD: A user-friendly open-source web tool for analyzing WES and WGS in the diagnosis of patients with Mendelian disorders.

Published in:

2017

By:

G. C. C. L. Cardenas, Raony;
D. Linhares, Natália;
L. Ferreira, Raquel;
Pena, Sérgio D. J.

Publication type:

Product Review

A comprehensive overview and evaluation of circular RNA detection tools.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005420

By:

Zeng, Xiangxiang;
Lin, Wei;
Guo, Maozu;
Zou, Quan

Publication type:

Article

An integrated calcium imaging processing toolbox for the analysis of neuronal population dynamics.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005526

By:

Romano, Sebastián A.;
Pérez-Schuster, Verónica;
Jouary, Adrien;
Boulanger-Weill, Jonathan;
Candeo, Alessia;
Pietri, Thomas;
Sumbre, Germán

Publication type:

Article

Mechanisms underlying a thalamocortical transformation during active tactile sensation.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005576

By:

Gutnisky, Diego Adrian;
Yu, Jianing;
Hires, Samuel Andrew;
To, Minh-Son;
Bale, Michael;
Svoboda, Karel;
Golomb, David

Publication type:

Article

Fast and general tests of genetic interaction for genome-wide association studies.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005556

By:

Frånberg, Mattias;
Strawbridge, Rona J.;
Hamsten, Anders;
null, null;
de Faire, Ulf;
Lagergren, Jens;
Sennblad, Bengt

Publication type:

Article

Reduction of multiscale stochastic biochemical reaction networks using exact moment derivation.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005571

By:

Kim, Jae Kyoung;
Sontag, Eduardo D.

Publication type:

Article

Dynamic metabolic modeling of heterotrophic and mixotrophic microalgal growth on fermentative wastes.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005590

By:

Baroukh, Caroline;
Turon, Violette;
Bernard, Olivier

Publication type:

Article

Mechanisms of generation of membrane potential resonance in a neuron with multiple resonant ionic currents.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005565

By:

Fox, David M.;
Tseng, Hua-an;
Smolinski, Tomasz G.;
Rotstein, Horacio G.;
Nadim, Farzan

Publication type:

Article

MMTF—An efficient file format for the transmission, visualization, and analysis of macromolecular structures.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005575

By:

Bradley, Anthony R.;
Rose, Alexander S.;
Pavelka, Antonín;
Valasatava, Yana;
Duarte, Jose M.;
Prlić, Andreas;
Rose, Peter W.

Publication type:

Article