Works matching IS 1553734X AND DT 2017 AND VI 13 AND IP 5

Results: 50

: Classification and source attribution of infectious agents among heterogeneous populations.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005564

By:

Miller, Poppy;
Marshall, Jonathan;
French, Nigel;
Jewell, Chris

Publication type:

Article

On the effects of alternative optima in context-specific metabolic model predictions.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005568

By:

Robaina-Estévez, Semidán;
Nikoloski, Zoran

Publication type:

Article

Hard real-time closed-loop electrophysiology with the Real-Time eXperiment Interface (RTXI).

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005430

By:

Patel, Yogi A.;
George, Ansel;
Dorval, Alan D.;
White, John A.;
Christini, David J.;
Butera, Robert J.

Publication type:

Article

Novel mRNA-specific effects of ribosome drop-off on translation rate and polysome profile.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005555

By:

Bonnin, Pierre;
Kern, Norbert;
Young, Neil T.;
Stansfield, Ian;
Romano, M. Carmen

Publication type:

Article

Dynamic decomposition of spatiotemporal neural signals.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005540

By:

Ambrogioni, Luca;
van Gerven, Marcel A. J.;
Maris, Eric

Publication type:

Article

Adaptation towards scale-free dynamics improves cortical stimulus discrimination at the cost of reduced detection.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005574

By:

Clawson, Wesley P.;
Wright, Nathaniel C.;
Wessel, Ralf;
Shew, Woodrow L.

Publication type:

Article

Correction: Intrinsic Noise Profoundly Alters the Dynamics and Steady State of Morphogen-Controlled Bistable Genetic Switches.

Published in:

2017

By:

null, null

Publication type:

Correction Notice

Chemomechanical regulation of myosin Ic cross-bridges: Deducing the elastic properties of an ensemble from single-molecule mechanisms.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005566

By:

Berger, Florian;
Hudspeth, A. J.

Publication type:

Article

Ten simple rules for surviving an interdisciplinary PhD.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005512

By:

Demharter, Samuel;
Pearce, Nicholas;
Beattie, Kylie;
Frost, Isabel;
Leem, Jinwoo;
Martin, Alistair;
Oppenheimer, Robert;
Regep, Cristian;
Rukat, Tammo;
Skates, Alexander;
Trendel, Nicola;
Gavaghan, David J.;
Deane, Charlotte M.;
Knapp, Bernhard

Publication type:

Article

An agent-based model of leukocyte transendothelial migration during atherogenesis.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005523

By:

Bhui, Rita;
Hayenga, Heather N.

Publication type:

Article

Predicting cryptic links in host-parasite networks.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005557

By:

Dallas, Tad;
Park, Andrew W;
Drake, John M

Publication type:

Article

Jupyter and Galaxy: Easing entry barriers into complex data analyses for biomedical researchers.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005425

By:

Grüning, Björn A.;
Rasche, Eric;
Rebolledo-Jaramillo, Boris;
Eberhard, Carl;
Houwaart, Torsten;
Chilton, John;
Coraor, Nate;
Backofen, Rolf;
Taylor, James;
Nekrutenko, Anton

Publication type:

Article

ROTS: An R package for reproducibility-optimized statistical testing.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005562

By:

Suomi, Tomi;
Seyednasrollah, Fatemeh;
Jaakkola, Maria K.;
Faux, Thomas;
Elo, Laura L.

Publication type:

Article

Spontaneous cortical activity is transiently poised close to criticality.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005543

By:

Monier, Cyril;
Frégnac, Yves;
Hahn, Gerald;
Ponce-Alvarez, Adrian;
Deco, Gustavo;
Benvenuti, Giacomo;
Chavane, Frédéric;
Kumar, Arvind

Publication type:

Article

Uncovering direct and indirect molecular determinants of chromatin loops using a computational integrative approach.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005538

By:

Mourad, Raphaël;
Li, Lang;
Cuvier, Olivier

Publication type:

Article

Multi-scale computational study of the mechanical regulation of cell mitotic rounding in epithelia.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005533

By:

Nematbakhsh, Ali;
Sun, Wenzhao;
Brodskiy, Pavel A.;
Amiri, Aboutaleb;
Narciso, Cody;
Xu, Zhiliang;
Zartman, Jeremiah J.;
Alber, Mark

Publication type:

Article

BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005544

By:

Bauer, Eugen;
Zimmermann, Johannes;
Baldini, Federico;
Thiele, Ines;
Kaleta, Christoph

Publication type:

Article

Protein charge distribution in proteomes and its impact on translation.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005549

By:

D. Requião, Rodrigo;
Fernandes, Luiza;
de Souza, Henrique José Araujo;
Rossetto, Silvana;
Domitrovic, Tatiana;
Palhano, Fernando L.

Publication type:

Article

PyLDM - An open source package for lifetime density analysis of time-resolved spectroscopic data.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005528

By:

Dorlhiac, Gabriel F.;
Fare, Clyde;
van Thor, Jasper J.

Publication type:

Article

Correction: Complex Dynamics of Virus Spread from Low Infection Multiplicities: Implications for the Spread of Oncolytic Viruses.

Published in:

2017

By:

null, null

Publication type:

Correction Notice

Automatically tracking neurons in a moving and deforming brain.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005517

By:

Nguyen, Jeffrey P.;
Linder, Ashley N.;
Plummer, George S.;
Shaevitz, Joshua W.;
Leifer, Andrew M.

Publication type:

Article

Transcriptomics technologies.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005457

By:

Lowe, Rohan;
Shirley, Neil;
Bleackley, Mark;
Dolan, Stephen;
Shafee, Thomas

Publication type:

Article

Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005495

By:

Klinkenberg, Don;
Backer, Jantien A.;
Didelot, Xavier;
Colijn, Caroline;
Wallinga, Jacco

Publication type:

Article

Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005489

By:

Wang, Zhuo;
Danziger, Samuel A.;
Heavner, Benjamin D.;
Ma, Shuyi;
Smith, Jennifer J.;
Li, Song;
Herricks, Thurston;
Simeonidis, Evangelos;
Baliga, Nitin S.;
Aitchison, John D.;
Price, Nathan D.

Publication type:

Article

Mixture models reveal multiple positional bias types in RNA-Seq data and lead to accurate transcript concentration estimates.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005515

By:

Tuerk, Andreas;
Wiktorin, Gregor;
Güler, Serhat

Publication type:

Article

A predictive coding account of bistable perception - a model-based fMRI study.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005536

By:

Weilnhammer, Veith;
Stuke, Heiner;
Hesselmann, Guido;
Sterzer, Philipp;
Schmack, Katharina

Publication type:

Article

SteadyCom: Predicting microbial abundances while ensuring community stability.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005539

By:

Chan, Siu Hung Joshua;
Simons, Margaret N.;
Maranas, Costas D.

Publication type:

Article

High-order epistasis shapes evolutionary trajectories.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005541

By:

Sailer, Zachary R.;
Harms, Michael J.

Publication type:

Article

An independent component analysis confounding factor correction framework for identifying broad impact expression quantitative trait loci.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005537

By:

Ju, Jin Hyun;
Shenoy, Sushila A.;
Crystal, Ronald G.;
Mezey, Jason G.

Publication type:

Article

FIMTrack: An open source tracking and locomotion analysis software for small animals.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005530

By:

Risse, Benjamin;
Berh, Dimitri;
Otto, Nils;
Klämbt, Christian;
Jiang, Xiaoyi

Publication type:

Article

Identifying stochastic oscillations in single-cell live imaging time series using Gaussian processes.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005479

By:

Phillips, Nick E.;
Manning, Cerys;
Papalopulu, Nancy;
Rattray, Magnus

Publication type:

Article

Short-term activity cycles impede information transmission in ant colonies.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005527

By:

Richardson, Thomas O.;
Liechti, Jonas I.;
Stroeymeyt, Nathalie;
Bonhoeffer, Sebastian;
Keller, Laurent

Publication type:

Article

Sequential inference as a mode of cognition and its correlates in fronto-parietal and hippocampal brain regions.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005418

By:

FitzGerald, Thomas H. B.;
Hämmerer, Dorothea;
Friston, Karl J.;
Li, Shu-Chen;
Dolan, Raymond J.

Publication type:

Article

Single-molecule protein identification by sub-nanopore sensors.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005356

By:

Kolmogorov, Mikhail;
Kennedy, Eamonn;
Dong, Zhuxin;
Timp, Gregory;
Pevzner, Pavel A.

Publication type:

Article

The decay of motor adaptation to novel movement dynamics reveals an asymmetry in the stability of motion state-dependent learning.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005492

By:

Hosseini, Eghbal A.;
Nguyen, Katrina P.;
Joiner, Wilsaan M.

Publication type:

Article

Post-transcriptional regulation across human tissues.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005535

By:

Franks, Alexander;
Airoldi, Edoardo;
Slavov, Nikolai

Publication type:

Article

Epidemiological modeling of Trypanosoma cruzi: Low stercorarian transmission and failure of host adaptive immunity explain the frequency of mixed infections in humans.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005532

By:

Tomasini, Nicolás;
Ragone, Paula Gabriela;
Gourbière, Sébastien;
Aparicio, Juan Pablo;
Diosque, Patricio

Publication type:

Article

A mathematical model coupling polarity signaling to cell adhesion explains diverse cell migration patterns.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005524

By:

Holmes, William R.;
Park, JinSeok;
Levchenko, Andre;
Edelstein-Keshet, Leah

Publication type:

Article

Mechanisms underlying different onset patterns of focal seizures.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005475

By:

Wang, Yujiang;
Trevelyan, Andrew J;
Valentin, Antonio;
Alarcon, Gonzalo;
Taylor, Peter N;
Kaiser, Marcus

Publication type:

Article

A systems-level model reveals that 1,2-Propanediol utilization microcompartments enhance pathway flux through intermediate sequestration.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005525

By:

Jakobson, Christopher M.;
Tullman-Ercek, Danielle;
Slininger, Marilyn F.;
Mangan, Niall M.

Publication type:

Article

Ten simple rules to consider regarding preprint submission.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005473

By:

Bourne, Philip E.;
Polka, Jessica K.;
Vale, Ronald D.;
Kiley, Robert

Publication type:

Article

Top-down control of cortical gamma-band communication via pulvinar induced phase shifts in the alpha rhythm.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005519

By:

Quax, Silvan;
Jensen, Ole;
Tiesinga, Paul

Publication type:

Article

Ten simple rules to make the most out of your undergraduate research career.

Published in:

2017

By:

Yu, Megan;
Kuo, Yu-Min

Publication type:

Editorial

MAGERI: Computational pipeline for molecular-barcoded targeted resequencing.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005480

By:

Shugay, Mikhail;
Zaretsky, Andrew R.;
Shagin, Dmitriy A.;
Shagina, Irina A.;
Volchenkov, Ivan A.;
Shelenkov, Andrew A.;
Lebedin, Mikhail Y.;
Bagaev, Dmitriy V.;
Lukyanov, Sergey;
Chudakov, Dmitriy M.

Publication type:

Article

Widespread position-specific conservation of synonymous rare codons within coding sequences.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005531

By:

Chaney, Julie L.;
Steele, Aaron;
Carmichael, Rory;
Rodriguez, Anabel;
Specht, Alicia T.;
Ngo, Kim;
Li, Jun;
Emrich, Scott;
Clark, Patricia L.

Publication type:

Article

Modelling of the cancer cell cycle as a tool for rational drug development: A systems pharmacology approach to cyclotherapy.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005529

By:

Jackson, Robert C.;
Di Veroli, Giovanni Y.;
Koh, Siang-Boon;
Goldlust, Ian;
Richards, Frances M.;
Jodrell, Duncan I.

Publication type:

Article

Slow diffusive dynamics in a chaotic balanced neural network.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005505

By:

Shaham, Nimrod;
Burak, Yoram

Publication type:

Article

Co-occurring protein phosphorylation are functionally associated.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005502

By:

Li, Ying;
Zhou, Xueya;
Zhai, Zichao;
Li, Tingting

Publication type:

Article

Nucleotide-time alignment for molecular recorders.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005483

By:

Cybulski, Thaddeus R.;
Boyden, Edward S.;
Church, George M.;
Tyo, Keith E. J.;
Kording, Konrad P.

Publication type:

Article

phyC: Clustering cancer evolutionary trees.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pcbi.1005509

By:

Matsui, Yusuke;
Niida, Atsushi;
Uchi, Ryutaro;
Mimori, Koshi;
Miyano, Satoru;
Shimamura, Teppei

Publication type:

Article