Works matching IS 1553734X AND DT 2017 AND VI 13 AND IP 3

Results: 50

Migration of small ligands in globins: Xe diffusion in truncated hemoglobin N.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005450

By:

Diamantis, Polydefkis;
Unke, Oliver T.;
Meuwly, Markus

Publication type:

Article

Beware batch culture: Seasonality and niche construction predicted to favor bacterial adaptive diversification.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005459

By:

Rocabert, Charles;
Knibbe, Carole;
Consuegra, Jessika;
Schneider, Dominique;
Beslon, Guillaume

Publication type:

Article

Systematic identification of phosphorylation-mediated protein interaction switches.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005462

By:

Betts, Matthew J.;
Wichmann, Oliver;
Utz, Mathias;
Andre, Timon;
Petsalaki, Evangelia;
Minguez, Pablo;
Parca, Luca;
Roth, Frederick P.;
Gavin, Anne-Claude;
Bork, Peer;
Russell, Robert B.

Publication type:

Article

Ten simple rules for short and swift presentations.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005373

By:

Lortie, Christopher J.

Publication type:

Article

Learning about and from others' prudence, impatience or laziness: The computational bases of attitude alignment.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005422

By:

Devaine, Marie;
Daunizeau, Jean

Publication type:

Article

ARACHNE: A neural-neuroglial network builder with remotely controlled parallel computing.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005467

By:

Aleksin, Sergey G.;
Zheng, Kaiyu;
Rusakov, Dmitri A.;
Savtchenko, Leonid P.

Publication type:

Article

Effects of contact structure on the transient evolution of HIV virulence.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005453

By:

Park, Sang Woo;
Bolker, Benjamin M.

Publication type:

Article

Interrogating the topological robustness of gene regulatory circuits by randomization.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005456

By:

Huang, Bin;
Lu, Mingyang;
Jia, Dongya;
Ben-Jacob, Eshel;
Levine, Herbert;
Onuchic, Jose N.

Publication type:

Article

The preferred nucleotide contexts of the AID/APOBEC cytidine deaminases have differential effects when mutating retrotransposon and virus sequences compared to host genes.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005471

By:

Chen, Jeffrey;
MacCarthy, Thomas

Publication type:

Article

Geometry can provide long-range mechanical guidance for embryogenesis.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005443

By:

Dicko, Mahamar;
Saramito, Pierre;
Blanchard, Guy B.;
Lye, Claire M.;
Sanson, Bénédicte;
Étienne, Jocelyn

Publication type:

Article

Dysfunctions of the basal ganglia-cerebellar-thalamo-cortical system produce motor tics in Tourette syndrome.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005395

By:

Caligiore, Daniele;
Mannella, Francesco;
Arbib, Michael A.;
Baldassarre, Gianluca

Publication type:

Article

High GC content causes orphan proteins to be intrinsically disordered.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005375

By:

Basile, Walter;
Sachenkova, Oxana;
Light, Sara;
Elofsson, Arne

Publication type:

Article

Phylodynamics on local sexual contact networks.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005448

By:

Rasmussen, David A.;
Kouyos, Roger;
Günthard, Huldrych F.;
Stadler, Tanja

Publication type:

Article

Ten simple rules for responsible big data research.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005399

By:

Zook, Matthew;
Barocas, Solon;
boyd, danah;
Crawford, Kate;
Keller, Emily;
Gangadharan, Seeta Peña;
Goodman, Alyssa;
Hollander, Rachelle;
Koenig, Barbara A.;
Metcalf, Jacob;
Narayanan, Arvind;
Nelson, Alondra;
Pasquale, Frank

Publication type:

Article

A critical analysis of computational protein design with sparse residue interaction graphs.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005346

By:

Jain, Swati;
Jou, Jonathan D.;
Georgiev, Ivelin S.;
Donald, Bruce R.

Publication type:

Article

A computational analysis of in vivo VEGFR activation by multiple co-expressed ligands.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005445

By:

Clegg, Lindsay E.;
Mac Gabhann, Feilim

Publication type:

Article

Correction: A Molecular Clock Infers Heterogeneous Tissue Age Among Patients with Barrett's Esophagus.

Published in:

2017

By:

null, null

Publication type:

Correction Notice

Reconstruction and signal propagation analysis of the Syk signaling network in breast cancer cells.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005432

By:

Naldi, Aurélien;
Larive, Romain M.;
Czerwinska, Urszula;
Urbach, Serge;
Montcourrier, Philippe;
Roy, Christian;
Solassol, Jérôme;
Freiss, Gilles;
Coopman, Peter J.;
Radulescu, Ovidiu

Publication type:

Article

Fragility of foot process morphology in kidney podocytes arises from chaotic spatial propagation of cytoskeletal instability.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005433

By:

Falkenberg, Cibele V.;
Azeloglu, Evren U.;
Stothers, Mark;
Deerinck, Thomas J.;
Chen, Yibang;
He, John C.;
Ellisman, Mark H.;
Hone, James C.;
Iyengar, Ravi;
Loew, Leslie M.

Publication type:

Article

Classification and adaptive behavior prediction of children with autism spectrum disorder based upon multivariate data analysis of markers of oxidative stress and DNA methylation.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005385

By:

Howsmon, Daniel P.;
Kruger, Uwe;
Melnyk, Stepan;
James, S. Jill;
Hahn, Juergen

Publication type:

Article

PBMDA: A novel and effective path-based computational model for miRNA-disease association prediction.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005455

By:

You, Zhu-Hong;
Huang, Zhi-An;
Zhu, Zexuan;
Yan, Gui-Ying;
Li, Zheng-Wei;
Wen, Zhenkun;
Chen, Xing

Publication type:

Article

Bioenergetics-based modeling of Plasmodium falciparum metabolism reveals its essential genes, nutritional requirements, and thermodynamic bottlenecks.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005397

By:

Chiappino-Pepe, Anush;
Tymoshenko, Stepan;
Ataman, Meriç;
Soldati-Favre, Dominique;
Hatzimanikatis, Vassily

Publication type:

Article

Network perturbation by recurrent regulatory variants in cancer.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005449

By:

Jang, Kiwon;
Kim, Kwoneel;
Cho, Ara;
Lee, Insuk;
Choi, Jung Kyoon

Publication type:

Article

Ten simple rules for forming a scientific professional society.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005226

By:

Gaëta, Bruno A.;
De Las Rivas, Javier;
Horton, Paul;
Meysman, Pieter;
Mulder, Nicola;
Romano, Paolo;
Welch, Lonnie

Publication type:

Article

Structurally detailed coarse-grained model for Sec-facilitated co-translational protein translocation and membrane integration.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005427

By:

Niesen, Michiel J. M.;
Wang, Connie Y.;
Van Lehn, Reid C.;
IIIMiller, Thomas F.

Publication type:

Article

Navigating in foldonia: Using accelerated molecular dynamics to explore stability, unfolding and self-healing of the β-solenoid structure formed by a silk-like polypeptide.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005446

By:

Zhao, Binwu;
Cohen Stuart, Martien A.;
Hall, Carol K.

Publication type:

Article

A general model for metabolic scaling in self-similar asymmetric networks.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005394

By:

Brummer, Alexander Byers;
Savage, Van M.;
Enquist, Brian J.

Publication type:

Article

PLOS Computational Biology 2016 Reviewer and Editorial Board Thank You.

Published in:: PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005442
Publication type:: Article

A thermodynamically consistent model of the post-translational Kai circadian clock.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005415

By:

Paijmans, Joris;
Lubensky, David K.;
ten Wolde, Pieter Rein

Publication type:

Article

Fast online deconvolution of calcium imaging data.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005423

By:

Friedrich, Johannes;
Zhou, Pengcheng;
Paninski, Liam

Publication type:

Article

Stimulus-specific adaptation in a recurrent network model of primary auditory cortex.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005437

By:

Yarden, Tohar S.;
Nelken, Israel

Publication type:

Article

A model for brain life history evolution.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005380

By:

González-Forero, Mauricio;
Faulwasser, Timm;
Lehmann, Laurent

Publication type:

Article

Parameter estimation for multistage clonal expansion models from cancer incidence data: A practical identifiability analysis.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005431

By:

Brouwer, Andrew F.;
Meza, Rafael;
Eisenberg, Marisa C.

Publication type:

Article

Correction: Inference of Quantitative Models of Bacterial Promoters from Time-Series Reporter Gene Data.

Published in:

2017

By:

null, null

Publication type:

Correction Notice

Patient-specific modeling of individual sickle cell behavior under transient hypoxia.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005426

By:

Li, Xuejin;
Du, E.;
Dao, Ming;
Suresh, Subra;
Karniadakis, George Em

Publication type:

Article

A human judgment approach to epidemiological forecasting.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005248

By:

Farrow, David C.;
Brooks, Logan C.;
Hyun, Sangwon;
Tibshirani, Ryan J.;
Burke, Donald S.;
Rosenfeld, Roni

Publication type:

Article

Dynamics robustness of cascading systems.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005434

By:

Young, Jonathan T.;
Hatakeyama, Tetsuhiro S.;
Kaneko, Kunihiko

Publication type:

Article

BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005209

By:

Gorgolewski, Krzysztof J.;
Alfaro-Almagro, Fidel;
Auer, Tibor;
Bellec, Pierre;
Capotă, Mihai;
Chakravarty, M. Mallar;
Churchill, Nathan W.;
Cohen, Alexander Li;
Craddock, R. Cameron;
Devenyi, Gabriel A.;
Eklund, Anders;
Esteban, Oscar;
Flandin, Guillaume;
Ghosh, Satrajit S.;
Guntupalli, J. Swaroop;
Jenkinson, Mark;
Keshavan, Anisha;
Kiar, Gregory;
Liem, Franziskus;
Raamana, Pradeep Reddy

Publication type:

Article

Modelling T cell proliferation: Dynamics heterogeneity depending on cell differentiation, age, and genetic background.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005417

By:

Vibert, Julien;
Thomas-Vaslin, Véronique

Publication type:

Article

Managing uncertainty in metabolic network structure and improving predictions using EnsembleFBA.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005413

By:

Biggs, Matthew B.;
Papin, Jason A.

Publication type:

Article

Bistable front dynamics in a contractile medium: Travelling wave fronts and cortical advection define stable zones of RhoA signaling at epithelial adherens junctions.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005411

By:

Priya, Rashmi;
Gomez, Guillermo A.;
Budnar, Srikanth;
Acharya, Bipul R.;
Czirok, Andras;
Yap, Alpha S.;
Neufeld, Zoltan

Publication type:

Article

Biomarkers are used to predict quantitative metabolite concentration profiles in human red blood cells.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005424

By:

Yurkovich, James T.;
Yang, Laurence;
Palsson, Bernhard O.

Publication type:

Article

Feedback between motion and sensation provides nonlinear boost in run-and-tumble navigation.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005429

By:

Long, Junjiajia;
Zucker, Steven W.;
Emonet, Thierry

Publication type:

Article

Inferring epidemiological parameters from phylogenies using regression-ABC: A comparative study.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005416

By:

Saulnier, Emma;
Gascuel, Olivier;
Alizon, Samuel

Publication type:

Article

Mechanisms of fast and stringent search in homologous pairing of double-stranded DNA.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005421

By:

Bitran, Amir;
Chiang, Wei-Yin;
Levine, Erel;
Prentiss, Mara

Publication type:

Article

Novel non-invasive algorithm to identify the origins of re-entry and ectopic foci in the atria from 64-lead ECGs: A computational study.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005270

By:

Alday, Erick A. Perez;
Colman, Michael A.;
Langley, Philip;
Zhang, Henggui

Publication type:

Article

Scalable Design of Paired CRISPR Guide RNAs for Genomic Deletion.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005341

By:

Pulido-Quetglas, Carlos;
Aparicio-Prat, Estel;
Arnan, Carme;
Polidori, Taisia;
Hermoso, Toni;
Palumbo, Emilio;
Ponomarenko, Julia;
Guigo, Roderic;
Johnson, Rory

Publication type:

Article

Fidelity of the representation of value in decision-making.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005405

By:

Bays, Paul M.;
Dowding, Ben A.

Publication type:

Article

A magnesium-induced triplex pre-organizes the SAM-II riboswitch.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005406

By:

Roy, Susmita;
Lammert, Heiko;
Hayes, Ryan L.;
Chen, Bin;
LeBlanc, Regan;
Dayie, T. Kwaku;
Onuchic, José N.;
Sanbonmatsu, Karissa Y.

Publication type:

Article

Multiregional integration in the brain during resting-state fMRI activity.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005410

By:

Hay, Etay;
Ritter, Petra;
Lobaugh, Nancy J.;
McIntosh, Anthony R.

Publication type:

Article