Works matching IS 1553734X AND DT 2017 AND VI 13 AND IP 2

Results: 53

The role of the Hes1 crosstalk hub in Notch-Wnt interactions of the intestinal crypt.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005400

By:

Kay, Sophie K.;
Harrington, Heather A.;
Shepherd, Sarah;
Brennan, Keith;
Dale, Trevor;
Osborne, James M.;
Gavaghan, David J.;
Byrne, Helen M.

Publication type:

Article

Correction: Behavioral Modeling of Human Choices Reveals Dissociable Effects of Physical Effort and Temporal Delay on Reward Devaluation.

Published in:

2017

By:

null, null

Publication type:

Correction Notice

Modeling of the axon membrane skeleton structure and implications for its mechanical properties.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005407

By:

Zhang, Yihao;
Abiraman, Krithika;
Li, He;
Pierce, David M.;
Tzingounis, Anastasios V.;
Lykotrafitis, George

Publication type:

Article

The genotype-phenotype map of an evolving digital organism.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005414

By:

Fortuna, Miguel A.;
Zaman, Luis;
Ofria, Charles;
Wagner, Andreas

Publication type:

Article

Imputation for transcription factor binding predictions based on deep learning.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005403

By:

Qin, Qian;
Feng, Jianxing

Publication type:

Article

On the stability and dynamics of stochastic spiking neuron models: Nonlinear Hawkes process and point process GLMs.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005390

By:

Gerhard, Felipe;
Deger, Moritz;
Truccolo, Wilson

Publication type:

Article

ALKBH7 Variant Related to Prostate Cancer Exhibits Altered Substrate Binding.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005345

By:

Walker, Alice R.;
Silvestrov, Pavel;
Müller, Tina A.;
Podolsky, Robert H.;
Dyson, Gregory;
Hausinger, Robert P.;
Cisneros, Gerardo Andrés

Publication type:

Article

Mindboggling morphometry of human brains.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005350

By:

Klein, Arno;
Ghosh, Satrajit S.;
Bao, Forrest S.;
Giard, Joachim;
Häme, Yrjö;
Stavsky, Eliezer;
Lee, Noah;
Rossa, Brian;
Reuter, Martin;
Chaibub Neto, Elias;
Keshavan, Anisha

Publication type:

Article

A Causal Inference Model Explains Perception of the McGurk Effect and Other Incongruent Audiovisual Speech.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005229

By:

Magnotti, John F.;
Beauchamp, Michael S.

Publication type:

Article

Metacoder: An R package for visualization and manipulation of community taxonomic diversity data.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005404

By:

Foster, Zachary S. L.;
Sharpton, Thomas J.;
Grünwald, Niklaus J.

Publication type:

Article

Optimality principles reveal a complex interplay of intermediate toxicity and kinetic efficiency in the regulation of prokaryotic metabolism.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005371

By:

Ewald, Jan;
Bartl, Martin;
Dandekar, Thomas;
Kaleta, Christoph

Publication type:

Article

graph-GPA: A graphical model for prioritizing GWAS results and investigating pleiotropic architecture.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005388

By:

Chung, Dongjun;
Kim, Hang J.;
Zhao, Hongyu

Publication type:

Article

Correction: Psychotic Experiences and Overhasty Inferences Are Related to Maladaptive Learning.

Published in:

2017

By:

Stuke, Heiner;
Stuke, Hannes;
Weilnhammer, Veith Andreas;
Schmack, Katharina

Publication type:

Correction Notice

Two dynamic regimes in the human gut microbiome.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005364

By:

Gibbons, Sean M.;
Kearney, Sean M.;
Smillie, Chris S.;
Alm, Eric J.

Publication type:

Article

Testing the limits of gradient sensing.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005386

By:

Lakhani, Vinal;
Elston, Timothy C.

Publication type:

Article

Computational identification of the selenocysteine tRNA (tRNA<sup>Sec</sup>) in genomes.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005383

By:

Santesmasses, Didac;
Mariotti, Marco;
Guigó, Roderic

Publication type:

Article

A mathematical model of calcium dynamics in HSY cells.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005275

By:

Han, Jung Min;
Tanimura, Akihiko;
Kirk, Vivien;
Sneyd, James

Publication type:

Article

Depth-dependent flow and pressure characteristics in cortical microvascular networks.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005392

By:

Schmid, Franca;
Tsai, Philbert S.;
Kleinfeld, David;
Jenny, Patrick;
Weber, Bruno

Publication type:

Article

Mathematical models of tissue stem and transit target cell divisions and the risk of radiation- or smoking-associated cancer.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005391

By:

Little, Mark P.;
Hendry, Jolyon H.

Publication type:

Article

Co-emergence of multi-scale cortical activities of irregular firing, oscillations and avalanches achieves cost-efficient information capacity.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005384

By:

Yang, Dong-Ping;
Zhou, Hai-Jun;
Zhou, Changsong

Publication type:

Article

Quantifying the Value of Perfect Information in Emergency Vaccination Campaigns.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005318

By:

Bradbury, Naomi V.;
Probert, William J. M.;
Shea, Katriona;
Runge, Michael C.;
Fonnesbeck, Christopher J.;
Keeling, Matt J.;
Ferrari, Matthew J.;
Tildesley, Michael J.

Publication type:

Article

Comparing individual-based approaches to modelling the self-organization of multicellular tissues.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005387

By:

Osborne, James M.;
Fletcher, Alexander G.;
Pitt-Francis, Joe M.;
Maini, Philip K.;
Gavaghan, David J.

Publication type:

Article

Elucidation of molecular kinetic schemes from macroscopic traces using system identification.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005376

By:

Fribourg, Miguel;
Logothetis, Diomedes E.;
González-Maeso, Javier;
Sealfon, Stuart C.;
Galocha-Iragüen, Belén;
Las-Heras Andrés, Fernando;
Brezina, Vladimir

Publication type:

Article

Conformational diversity analysis reveals three functional mechanisms in proteins.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005398

By:

Monzon, Alexander Miguel;
Zea, Diego Javier;
Fornasari, María Silvina;
Saldaño, Tadeo E.;
Fernandez-Alberti, Sebastian;
Tosatto, Silvio C. E.;
Parisi, Gustavo

Publication type:

Article

Spatial separation of two different pathways accounting for the generation of calcium signals in astrocytes.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005377

By:

Oschmann, Franziska;
Mergenthaler, Konstantin;
Jungnickel, Evelyn;
Obermayer, Klaus

Publication type:

Article

An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of Proteins.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005284

By:

Harper, Angela F.;
Leuthaeuser, Janelle B.;
Babbitt, Patricia C.;
Morris, John H.;
Ferrin, Thomas E.;
Poole, Leslie B.;
Fetrow, Jacquelyn S.

Publication type:

Article

Metabolic regulation is sufficient for global and robust coordination of glucose uptake, catabolism, energy production and growth in Escherichia coli.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005396

By:

Millard, Pierre;
Smallbone, Kieran;
Mendes, Pedro

Publication type:

Article

Correction: Emergence of Slow-Switching Assemblies in Structured Neuronal Networks.

Published in:

2017

By:

null, null

Publication type:

Correction Notice

Human mobility and the spatial transmission of influenza in the United States.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005382

By:

Charu, Vivek;
Zeger, Scott;
Gog, Julia;
Bjørnstad, Ottar N.;
Kissler, Stephen;
Simonsen, Lone;
Grenfell, Bryan T.;
Viboud, Cécile

Publication type:

Article

Correction: Transcriptional Dynamics Reveal Critical Roles for Non-coding RNAs in the Immediate-Early Response.

Published in:

2017

By:

null, null

Publication type:

Correction Notice

Estimating the Respective Contributions of Human and Viral Genetic Variation to HIV Control.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005339

By:

Bartha, István;
McLaren, Paul J.;
Brumme, Chanson;
Harrigan, Richard;
Telenti, Amalio;
Fellay, Jacques

Publication type:

Article

Representing high throughput expression profiles via perturbation barcodes reveals compound targets.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005335

By:

Filzen, Tracey M.;
Kutchukian, Peter S.;
Hermes, Jeffrey D.;
Li, Jing;
Tudor, Matthew

Publication type:

Article

Predicting Structure-Function Relations and Survival following Surgical and Bronchoscopic Lung Volume Reduction Treatment of Emphysema.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005282

By:

Mondoñedo, Jarred R.;
Suki, Béla

Publication type:

Article

Computational investigation of sphingosine kinase 1 (SphK1) and calcium dependent ERK1/2 activation downstream of VEGFR2 in endothelial cells.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005332

By:

Bazzazi, Hojjat;
Popel, Aleksander S.

Publication type:

Article

Accuracy Maximization Analysis for Sensory-Perceptual Tasks: Computational Improvements, Filter Robustness, and Coding Advantages for Scaled Additive Noise.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005281

By:

Burge, Johannes;
Jaini, Priyank

Publication type:

Article

A quantitative model for the rate-limiting process of UGA alternative assignments to stop and selenocysteine codons.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005367

By:

Chen, Yen-Fu;
Lin, Hsiu-Chuan;
Chuang, Kai-Neng;
Lin, Chih-Hsu;
Yen, Hsueh-Chi;
Yeang, Chen-Hsiang

Publication type:

Article

Multiscale mutation clustering algorithm identifies pan-cancer mutational clusters associated with pathway-level changes in gene expression.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005347

By:

Poole, William;
Leinonen, Kalle;
Shmulevich, Ilya;
Knijnenburg, Theo;
Bernard, Brady

Publication type:

Article

Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005389

By:

Magee, Daniel;
Suchard, Marc A.;
Scotch, Matthew

Publication type:

Article

Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005352

By:

Chifman, Julia;
Arat, Seda;
Deng, Zhiyong;
Lemler, Erica;
Pino, James C.;
Harris, Leonard A.;
Kochen, Michael A.;
Lopez, Carlos F.;
Akman, Steven A.;
Torti, Frank M.;
Torti, Suzy V.;
Laubenbacher, Reinhard

Publication type:

Article

Data-driven reverse engineering of signaling pathways using ensembles of dynamic models.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005379

By:

Henriques, David;
Villaverde, Alejandro F.;
Rocha, Miguel;
Saez-Rodriguez, Julio;
Banga, Julio R.

Publication type:

Article

Insect Bio-inspired Neural Network Provides New Evidence on How Simple Feature Detectors Can Enable Complex Visual Generalization and Stimulus Location Invariance in the Miniature Brain of Honeybees.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005333

By:

Roper, Mark;
Fernando, Chrisantha;
Chittka, Lars

Publication type:

Article

Early and Real-Time Detection of Seasonal Influenza Onset.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005330

By:

Won, Miguel;
Marques-Pita, Manuel;
Louro, Carlota;
Gonçalves-Sá, Joana

Publication type:

Article

ASPASIA: A toolkit for evaluating the effects of biological interventions on SBML model behaviour.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005351

By:

Evans, Stephanie;
Alden, Kieran;
Cucurull-Sanchez, Lourdes;
Larminie, Christopher;
Coles, Mark C.;
Kullberg, Marika C.;
Timmis, Jon

Publication type:

Article

Unifying view of mechanical and functional hotspots across class A GPCRs.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005381

By:

Ponzoni, Luca;
Rossetti, Giulia;
Maggi, Luca;
Giorgetti, Alejandro;
Carloni, Paolo;
Micheletti, Cristian

Publication type:

Article

Dynamic Maternal Gradients Control Timing and Shift-Rates for Drosophila Gap Gene Expression.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005285

By:

Verd, Berta;
Crombach, Anton;
Jaeger, Johannes

Publication type:

Article

Correction: When Optimal Feedback Control Is Not Enough: Feedforward Strategies Are Required for Optimal Control with Active Sensing.

Published in:

2017

By:

null, null

Publication type:

Correction Notice

Ten Simple Rules on How to Organize a Scientific Retreat.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005344

By:

Ponomarenko, Julia;
Garrido, Romina;
Guigó, Roderic

Publication type:

Article

Ten Simple Rules for Developing a Successful Research Proposal in Brazil.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005289

By:

de Oliveira, Dyoni M.;
Buckeridge, Marcos S.;
dos Santos, Wanderley D.

Publication type:

Article

Correlation-based model of artificially induced plasticity in motor cortex by a bidirectional brain-computer interface.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005343

By:

Lajoie, Guillaume;
Krouchev, Nedialko I.;
Kalaska, John F.;
Fairhall, Adrienne L.;
Fetz, Eberhard E.

Publication type:

Article

A Comparative Analysis of Drug-Induced Hepatotoxicity in Clinically Relevant Situations.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005280

By:

Thiel, Christoph;
Cordes, Henrik;
Fabbri, Lorenzo;
Aschmann, Hélène Eloise;
Baier, Vanessa;
Smit, Ines;
Atkinson, Francis;
Blank, Lars Mathias;
Kuepfer, Lars

Publication type:

Article