Works matching IS 1553734X AND DT 2016 AND VI 12 AND IP 11

Results: 46

Kinase Inhibition Leads to Hormesis in a Dual Phosphorylation-Dephosphorylation Cycle.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005216

By:

Rashkov, Peter;
Barrett, Ian P.;
Beardmore, Robert E.;
Bendtsen, Claus;
Gudelj, Ivana

Publication type:

Article

Individual Differences in Dynamic Functional Brain Connectivity across the Human Lifespan.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005178

By:

Davison, Elizabeth N.;
Turner, Benjamin O.;
Schlesinger, Kimberly J.;
Miller, Michael B.;
Grafton, Scott T.;
Bassett, Danielle S.;
Carlson, Jean M.

Publication type:

Article

Extending Integrate-and-Fire Model Neurons to Account for the Effects of Weak Electric Fields and Input Filtering Mediated by the Dendrite.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005206

By:

Aspart, Florian;
Ladenbauer, Josef;
Obermayer, Klaus

Publication type:

Article

Correction: Multi-level Modeling of Light-Induced Stomatal Opening Offers New Insights into Its Regulation by Drought.

Published in:

2016

By:

null, null

Publication type:

Correction Notice

Text Mining Genotype-Phenotype Relationships from Biomedical Literature for Database Curation and Precision Medicine.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005017

By:

Singhal, Ayush;
Simmons, Michael;
Lu, Zhiyong

Publication type:

Article

Do Vascular Networks Branch Optimally or Randomly across Spatial Scales?

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005223

By:

Tekin, Elif;
Hunt, David;
Newberry, Mitchell G.;
Savage, Van M.

Publication type:

Article

Modeling Cellular Noise Underlying Heterogeneous Cell Responses in the Epidermal Growth Factor Signaling Pathway.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005222

By:

Iwamoto, Kazunari;
Shindo, Yuki;
Takahashi, Koichi

Publication type:

Article

Macromolecular Crowding Regulates the Gene Expression Profile by Limiting Diffusion.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005122

By:

Golkaram, Mahdi;
Hellander, Stefan;
Drawert, Brian;
Petzold, Linda R.

Publication type:

Article

Computational Discovery of Putative Leads for Drug Repositioning through Drug-Target Interaction Prediction.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005219

By:

Coelho, Edgar D.;
Arrais, Joel P.;
Oliveira, José Luís

Publication type:

Article

Real-Time Control of an Articulatory-Based Speech Synthesizer for Brain Computer Interfaces.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005119

By:

Bocquelet, Florent;
Hueber, Thomas;
Girin, Laurent;
Savariaux, Christophe;
Yvert, Blaise

Publication type:

Article

As Simple As Possible, but Not Simpler: Exploring the Fidelity of Coarse-Grained Protein Models for Simulated Force Spectroscopy.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005211

By:

Habibi, Mona;
Rottler, Jörg;
Plotkin, Steven S.

Publication type:

Article

Malaria Elimination Campaigns in the Lake Kariba Region of Zambia: A Spatial Dynamical Model.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005192

By:

Nikolov, Milen;
Bever, Caitlin A.;
Upfill-Brown, Alexander;
Hamainza, Busiku;
Miller, John M.;
Eckhoff, Philip A.;
Wenger, Edward A.;
Gerardin, Jaline

Publication type:

Article

Order Under Uncertainty: Robust Differential Expression Analysis Using Probabilistic Models for Pseudotime Inference.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005212

By:

Campbell, Kieran R.;
Yau, Christopher

Publication type:

Article

Creating High-Resolution Multiscale Maps of Human Tissue Using Multi-beam SEM.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005217

By:

Pereira, André F.;
Hageman, Daniel J.;
Garbowski, Tomasz;
Riedesel, Christof;
Knothe, Ulf;
Zeidler, Dirk;
Knothe Tate, Melissa L.

Publication type:

Article

A Biophysical Systems Approach to Identifying the Pathways of Acute and Chronic Doxorubicin Mitochondrial Cardiotoxicity.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005214

By:

de Oliveira, Bernardo L.;
Niederer, Steven

Publication type:

Article

Improved Measures of Integrated Information.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005123

By:

Tegmark, Max

Publication type:

Article

Identification of Conserved Moieties in Metabolic Networks by Graph Theoretical Analysis of Atom Transition Networks.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1004999

By:

Haraldsdóttir, Hulda S.;
Fleming, Ronan M. T.

Publication type:

Article

Antioxidant Properties of Kynurenines: Density Functional Theory Calculations.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005213

By:

Zhuravlev, Aleksandr V.;
Zakharov, Gennady A.;
Savvateeva-Popova, Elena V.;
Shchegolev, Boris F.

Publication type:

Article

Forecasting Influenza Outbreaks in Boroughs and Neighborhoods of New York City.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005201

By:

Yang, Wan;
Shaman, Jeffrey;
Olson, Donald R.

Publication type:

Article

An Integrative Approach to Computational Modelling of the Gene Regulatory Network Controlling Clostridium botulinum Type A1 Toxin Production.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005205

By:

Ihekwaba, Adaoha E. C.;
Peck, Michael W.;
Barker, Gary C.;
Walshaw, John;
Mura, Ivan

Publication type:

Article

Drivers of Inter-individual Variation in Dengue Viral Load Dynamics.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005194

By:

Ben-Shachar, Rotem;
Schmidler, Scott;
Koelle, Katia

Publication type:

Article

Error-Robust Modes of the Retinal Population Code.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005148

By:

Prentice, Jason S.;
Loback, Adrianna R.;
Ioffe, Mark L.;
IIBerry, Michael J.;
Marre, Olivier;
Tkačik, Gašper

Publication type:

Article

Markov Networks of Collateral Resistance: National Antimicrobial Resistance Monitoring System Surveillance Results from Escherichia coli Isolates, 2004-2012.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005160

By:

Love, William J.;
Zawack, Kelson A.;
Booth, James G.;
Grӧhn, Yrjo T.;
Lanzas, Cristina

Publication type:

Article

Kinetic Modeling of ABCG2 Transporter Heterogeneity: A Quantitative, Single-Cell Analysis of the Side Population Assay.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005188

By:

Prasanphanich, Adam F.;
White, Douglas E.;
Gran, Margaret A.;
Kemp, Melissa L.

Publication type:

Article

Quantifying Differences and Similarities in Whole-Brain White Matter Architecture Using Local Connectome Fingerprints.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005203

By:

Yeh, Fang-Cheng;
Vettel, Jean M.;
Singh, Aarti;
Poczos, Barnabas;
Grafton, Scott T.;
Erickson, Kirk I.;
Tseng, Wen-Yih I.;
Verstynen, Timothy D.

Publication type:

Article

PoCos: Population Covering Locus Sets for Risk Assessment in Complex Diseases.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005195

By:

Ayati, Marzieh;
Koyutürk, Mehmet

Publication type:

Article

Network Receptive Field Modeling Reveals Extensive Integration and Multi-feature Selectivity in Auditory Cortical Neurons.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005113

By:

Harper, Nicol S.;
Schoppe, Oliver;
Willmore, Ben D. B.;
Cui, Zhanfeng;
Schnupp, Jan W. H.;
King, Andrew J.

Publication type:

Article

The Environment Shapes the Inner Vestibule of LeuT.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005197

By:

Sohail, Azmat;
Jayaraman, Kumaresan;
Venkatesan, Santhoshkannan;
Gotfryd, Kamil;
Daerr, Markus;
Gether, Ulrik;
Loland, Claus J.;
Wanner, Klaus T.;
Freissmuth, Michael;
Sitte, Harald H.;
Sandtner, Walter;
Stockner, Thomas

Publication type:

Article

Ten Simple Rules for Developing Public Biological Databases.

Published in:

2016

By:

Helmy, Mohamed;
Crits-Christoph, Alexander;
Bader, Gary D.

Publication type:

Editorial

NullSeq: A Tool for Generating Random Coding Sequences with Desired Amino Acid and GC Contents.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005184

By:

Liu, Sophia S.;
Hockenberry, Adam J.;
Lancichinetti, Andrea;
Jewett, Michael C.;
Amaral, Luís A. N.

Publication type:

Article

Combined Changes in Chloride Regulation and Neuronal Excitability Enable Primary Afferent Depolarization to Elicit Spiking without Compromising its Inhibitory Effects.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005215

By:

Takkala, Petri;
Zhu, Yi;
Prescott, Steven A.

Publication type:

Article

MinePath: Mining for Phenotype Differential Sub-paths in Molecular Pathways.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005187

By:

Koumakis, Lefteris;
Kanterakis, Alexandros;
Kartsaki, Evgenia;
Chatzimina, Maria;
Zervakis, Michalis;
Tsiknakis, Manolis;
Vassou, Despoina;
Kafetzopoulos, Dimitris;
Marias, Kostas;
Moustakis, Vassilis;
Potamias, George

Publication type:

Article

Machine Learning for Characterization of Insect Vector Feeding.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005158

By:

Willett, Denis S.;
George, Justin;
Willett, Nora S.;
Stelinski, Lukasz L.;
Lapointe, Stephen L.

Publication type:

Article

High-Frequency Resonance in the Gerbil Medial Superior Olive.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005166

By:

Mikiel-Hunter, Jason;
Kotak, Vibhakar;
Rinzel, John

Publication type:

Article

A Statistical Framework to Identify Deviation from Time Linearity in Epigenetic Aging.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005183

By:

Snir, Sagi;
vonHoldt, Bridgett M.;
Pellegrini, Matteo

Publication type:

Article

Induced Fit in Protein Multimerization: The HFBI Case.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005202

By:

Riccardi, Laura;
Mereghetti, Paolo

Publication type:

Article

Co-operation between Polymerases and Nucleotide Synthetases in the RNA World.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005161

By:

Kim, Ye Eun;
Higgs, Paul G.

Publication type:

Article

Effect of Ionic Diffusion on Extracellular Potentials in Neural Tissue.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005193

By:

Halnes, Geir;
Mäki-Marttunen, Tuomo;
Keller, Daniel;
Pettersen, Klas H.;
Andreassen, Ole A.;
Einevoll, Gaute T.

Publication type:

Article

Tensor Analysis Reveals Distinct Population Structure that Parallels the Different Computational Roles of Areas M1 and V1.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005164

By:

Seely, Jeffrey S.;
Kaufman, Matthew T.;
Ryu, Stephen I.;
Shenoy, Krishna V.;
Cunningham, John P.;
Churchland, Mark M.

Publication type:

Article

Neural Population Dynamics during Reaching Are Better Explained by a Dynamical System than Representational Tuning.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005175

By:

Michaels, Jonathan A.;
Dann, Benjamin;
Scherberger, Hansjörg

Publication type:

Article

Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005177

By:

Van Valen, David A.;
Kudo, Takamasa;
Lane, Keara M.;
Macklin, Derek N.;
Quach, Nicolas T.;
DeFelice, Mialy M.;
Maayan, Inbal;
Tanouchi, Yu;
Ashley, Euan A.;
Covert, Markus W.

Publication type:

Article

Using Matrix and Tensor Factorizations for the Single-Trial Analysis of Population Spike Trains.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005189

By:

Onken, Arno;
Liu, Jian K.;
Karunasekara, P. P. Chamanthi R.;
Delis, Ioannis;
Gollisch, Tim;
Panzeri, Stefano

Publication type:

Article

Interrogating Emergent Transport Properties for Molecular Motor Ensembles: A Semi-analytical Approach.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005152

By:

Bhaban, Shreyas;
Materassi, Donatello;
Li, Mingang;
Hays, Thomas;
Salapaka, Murti

Publication type:

Article

The Protein Cost of Metabolic Fluxes: Prediction from Enzymatic Rate Laws and Cost Minimization.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005167

By:

Noor, Elad;
Flamholz, Avi;
Bar-Even, Arren;
Davidi, Dan;
Milo, Ron;
Liebermeister, Wolfram

Publication type:

Article

Dynamic Cholesterol-Conditioned Dimerization of the G Protein Coupled Chemokine Receptor Type 4.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005169

By:

Pluhackova, Kristyna;
Gahbauer, Stefan;
Kranz, Franziska;
Wassenaar, Tsjerk A.;
Böckmann, Rainer A.

Publication type:

Article

WORMHOLE: Novel Least Diverged Ortholog Prediction through Machine Learning.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005182

By:

Sutphin, George L.;
Mahoney, J. Matthew;
Sheppard, Keith;
Walton, David O.;
Korstanje, Ron

Publication type:

Article