Works matching IS 1553734X AND DT 2016 AND VI 12 AND IP 6

Results: 67

Colony Expansion of Socially Motile Myxococcus xanthus Cells Is Driven by Growth, Motility, and Exopolysaccharide Production.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005010

By:

Patra, Pintu;
Kissoon, Kimberley;
Cornejo, Isabel;
Kaplan, Heidi B.;
Igoshin, Oleg A.

Publication type:

Article

Inferring Strain Mixture within Clinical Plasmodium falciparum Isolates from Genomic Sequence Data.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004824

By:

O’Brien, John D.;
Iqbal, Zamin;
Wendler, Jason;
Amenga-Etego, Lucas

Publication type:

Article

Conservation in Mammals of Genes Associated with Aggression-Related Behavioral Phenotypes in Honey Bees.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004921

By:

Liu, Hui;
Robinson, Gene E.;
Jakobsson, Eric

Publication type:

Article

Evolutionary and Topological Properties of Genes and Community Structures in Human Gene Regulatory Networks.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005009

By:

Szedlak, Anthony;
Smith, Nicholas;
Liu, Li;
Paternostro, Giovanni;
Piermarocchi, Carlo

Publication type:

Article

Rare Variants Association Analysis in Large-Scale Sequencing Studies at the Single Locus Level.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004993

By:

Jeng, Xinge Jessie;
Daye, Zhongyin John;
Lu, Wenbin;
Tzeng, Jung-Ying

Publication type:

Article

Constrained Allocation Flux Balance Analysis.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004913

By:

Mori, Matteo;
Hwa, Terence;
Martin, Olivier C.;
De Martino, Andrea;
Marinari, Enzo

Publication type:

Article

Quantification and Classification of E. coli Proteome Utilization and Unused Protein Costs across Environments.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004998

By:

O’Brien, Edward J.;
Utrilla, Jose;
Palsson, Bernhard O.

Publication type:

Article

Modeling Inter-trial Variability of Saccade Trajectories: Effects of Lesions of the Oculomotor Part of the Fastigial Nucleus.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004866

By:

Eggert, Thomas;
Robinson, Farrel R.;
Straube, Andreas

Publication type:

Article

A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004890

By:

Noren, David P.;
Long, Byron L.;
Norel, Raquel;
Rrhissorrakrai, Kahn;
Hess, Kenneth;
Hu, Chenyue Wendy;
Bisberg, Alex J.;
Schultz, Andre;
Engquist, Erik;
Liu, Li;
Lin, Xihui;
Chen, Gregory M.;
Xie, Honglei;
Hunter, Geoffrey A. M.;
Boutros, Paul C.;
Stepanov, Oleg;
null, null;
Norman, Thea;
Friend, Stephen H.;
Stolovitzky, Gustavo

Publication type:

Article

Isofunctional Protein Subfamily Detection Using Data Integration and Spectral Clustering.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005001

By:

Boari de Lima, Elisa;
JúniorMeira, Wagner;
Melo-Minardi, Raquel Cardoso de

Publication type:

Article

Model Constrained by Visual Hierarchy Improves Prediction of Neural Responses to Natural Scenes.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004927

By:

Antolík, Ján;
Hofer, Sonja B.;
Bednar, James A.;
Mrsic-Flogel, Thomas D.

Publication type:

Article

How to Estimate Epidemic Risk from Incomplete Contact Diaries Data?

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005002

By:

Mastrandrea, Rossana;
Barrat, Alain

Publication type:

Article

Computationally Efficient Implementation of a Novel Algorithm for the General Unified Threshold Model of Survival (GUTS).

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004978

By:

Albert, Carlo;
Vogel, Sören;
Ashauer, Roman

Publication type:

Article

Competitive Dynamics in MSTd: A Mechanism for Robust Heading Perception Based on Optic Flow.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004942

By:

Layton, Oliver W.;
Fajen, Brett R.

Publication type:

Article

Genes as Cues of Relatedness and Social Evolution in Heterogeneous Environments.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005006

By:

Leimar, Olof;
Dall, Sasha R. X.;
Hammerstein, Peter;
McNamara, John M.

Publication type:

Article

Prospective Coding by Spiking Neurons.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005003

By:

Brea, Johanni;
Gaál, Alexisz Tamás;
Urbanczik, Robert;
Senn, Walter

Publication type:

Article

The Context-Dependence of Mutations: A Linkage of Formalisms.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004771

By:

Poelwijk, Frank J.;
Krishna, Vinod;
Ranganathan, Rama

Publication type:

Article

Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004989

By:

Waagmeester, Andra;
Kutmon, Martina;
Riutta, Anders;
Miller, Ryan;
Willighagen, Egon L.;
Evelo, Chris T.;
Pico, Alexander R.

Publication type:

Article

Phylogeny Reconstruction with Alignment-Free Method That Corrects for Horizontal Gene Transfer.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004985

By:

Bromberg, Raquel;
Grishin, Nick V.;
Otwinowski, Zbyszek

Publication type:

Article

Ensembler: Enabling High-Throughput Molecular Simulations at the Superfamily Scale.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004728

By:

Parton, Daniel L.;
Grinaway, Patrick B.;
Hanson, Sonya M.;
Beauchamp, Kyle A.;
Chodera, John D.

Publication type:

Article

QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004809

By:

Thibodeau, Asa;
Márquez, Eladio J.;
Luo, Oscar;
Ruan, Yijun;
Menghi, Francesca;
Shin, Dong-Guk;
Stitzel, Michael L.;
Vera-Licona, Paola;
Ucar, Duygu

Publication type:

Article

Electrophysiology of Heart Failure Using a Rabbit Model: From the Failing Myocyte to Ventricular Fibrillation.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004968

By:

Ponnaluri, Aditya V. S.;
Perotti, Luigi E.;
Liu, Michael;
Qu, Zhilin;
Weiss, James N.;
Ennis, Daniel B.;
Klug, William S.;
Garfinkel, Alan

Publication type:

Article

Novel Computational Protocols for Functionally Classifying and Characterising Serine Beta-Lactamases.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004926

By:

Lee, David;
Das, Sayoni;
Dawson, Natalie L.;
Dobrijevic, Dragana;
Ward, John;
Orengo, Christine

Publication type:

Article

A Mathematical Model of Neonatal Rat Atrial Monolayers with Constitutively Active Acetylcholine-Mediated K<sup>+</sup> Current.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004946

By:

Majumder, Rupamanjari;
Jangsangthong, Wanchana;
Feola, Iolanda;
Ypey, Dirk L.;
Pijnappels, Daniël A.;
Panfilov, Alexander V.

Publication type:

Article

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004957

By:

Huson, Daniel H.;
Beier, Sina;
Flade, Isabell;
Górska, Anna;
El-Hadidi, Mohamed;
Mitra, Suparna;
Ruscheweyh, Hans-Joachim;
Tappu, Rewati

Publication type:

Article

Filopodial-Tension Model of Convergent-Extension of Tissues.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004952

By:

Belmonte, Julio M.;
Swat, Maciej H.;
Glazier, James A.

Publication type:

Article

Roles for Coincidence Detection in Coding Amplitude-Modulated Sounds.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004997

By:

Ashida, Go;
Kretzberg, Jutta;
Tollin, Daniel J.

Publication type:

Article

The Computational Development of Reinforcement Learning during Adolescence.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004953

By:

Palminteri, Stefano;
Kilford, Emma J.;
Coricelli, Giorgio;
Blakemore, Sarah-Jayne

Publication type:

Article

Pervasive Selection for Cooperative Cross-Feeding in Bacterial Communities.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004986

By:

Germerodt, Sebastian;
Bohl, Katrin;
Lück, Anja;
Pande, Samay;
Schröter, Anja;
Kaleta, Christoph;
Schuster, Stefan;
Kost, Christian

Publication type:

Article

Predicting Achievable Fundamental Frequency Ranges in Vocalization Across Species.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004907

By:

Titze, Ingo;
Riede, Tobias;
Mau, Ted

Publication type:

Article

Learning Universal Computations with Spikes.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004895

By:

Thalmeier, Dominik;
Uhlmann, Marvin;
Kappen, Hilbert J.;
Memmesheimer, Raoul-Martin

Publication type:

Article

GRAbB: Selective Assembly of Genomic Regions, a New Niche for Genomic Research.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004753

By:

Brankovics, Balázs;
Zhang, Hao;
van Diepeningen, Anne D.;
van der Lee, Theo A. J.;
Waalwijk, Cees;
de Hoog, G. Sybren

Publication type:

Article

Graded, Dynamically Routable Information Processing with Synfire-Gated Synfire Chains.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004979

By:

Wang, Zhuo;
Sornborger, Andrew T.;
Tao, Louis

Publication type:

Article

Training in High-Throughput Sequencing: Common Guidelines to Enable Material Sharing, Dissemination, and Reusability.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004937

By:

Schiffthaler, Bastian;
Kostadima, Myrto;
null, null;
Delhomme, Nicolas;
Rustici, Gabriella

Publication type:

Article

Correction: Evolution of Self-Organized Task Specialization in Robot Swarms.

Published in:

2016

By:

null, null

Publication type:

Correction Notice

Integration and Fixation Preferences of Human and Mouse Endogenous Retroviruses Uncovered with Functional Data Analysis.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004956

By:

Campos-Sánchez, Rebeca;
Cremona, Marzia A.;
Pini, Alessia;
Chiaromonte, Francesca;
Makova, Kateryna D.

Publication type:

Article

Mechanistic Mathematical Modeling Tests Hypotheses of the Neurovascular Coupling in fMRI.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004971

By:

Lundengård, Karin;
Cedersund, Gunnar;
Sten, Sebastian;
Leong, Felix;
Smedberg, Alexander;
Elinder, Fredrik;
Engström, Maria

Publication type:

Article

Formal Models of the Network Co-occurrence Underlying Mental Operations.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004994

By:

Bzdok, Danilo;
Varoquaux, Gaël;
Grisel, Olivier;
Eickenberg, Michael;
Poupon, Cyril;
Thirion, Bertrand

Publication type:

Article

Adaptive Spike Threshold Enables Robust and Temporally Precise Neuronal Encoding.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004984

By:

Huang, Chao;
Resnik, Andrey;
Celikel, Tansu;
Englitz, Bernhard

Publication type:

Article

Progression of Diabetic Capillary Occlusion: A Model.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004932

By:

Fu, Xiao;
Gens, John Scott;
Glazier, James A.;
Burns, Stephen A.;
Gast, Thomas J.

Publication type:

Article

Large Scale Chromosome Folding Is Stable against Local Changes in Chromatin Structure.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004987

By:

Florescu, Ana-Maria;
Therizols, Pierre;
Rosa, Angelo

Publication type:

Article

Accuracy of Answers to Cell Lineage Questions Depends on Single-Cell Genomics Data Quality and Quantity.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004983

By:

Spiro, Adam;
Shapiro, Ehud

Publication type:

Article

Phylogenetic Analysis Reveals That ERVs "Die Young" but HERV-H Is Unusually Conserved.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004964

By:

Gemmell, Patrick;
Hein, Jotun;
Katzourakis, Aris

Publication type:

Article

Deciphering Dimerization Modes of PAS Domains: Computational and Experimental Analyses of the AhR:ARNT Complex Reveal New Insights Into the Mechanisms of AhR Transformation.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004981

By:

Corrada, Dario;
Soshilov, Anatoly A.;
Denison, Michael S.;
Bonati, Laura

Publication type:

Article

Theory and Experimental Validation of a Spatio-temporal Model of Chemotherapy Transport to Enhance Tumor Cell Kill.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004969

By:

Wang, Zhihui;
Kerketta, Romica;
Chuang, Yao-Li;
Dogra, Prashant;
Butner, Joseph D.;
Brocato, Terisse A.;
Day, Armin;
Xu, Rong;
Shen, Haifa;
Simbawa, Eman;
AL-Fhaid, A. S.;
Mahmoud, S. R.;
Curley, Steven A.;
Ferrari, Mauro;
Koay, Eugene J.;
Cristini, Vittorio

Publication type:

Article

Revealing Atomic-Level Mechanisms of Protein Allostery with Molecular Dynamics Simulations.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004746

By:

Hertig, Samuel;
Latorraca, Naomi R.;
Dror, Ron O.

Publication type:

Article

Reservoir Computing Properties of Neural Dynamics in Prefrontal Cortex.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004967

By:

Enel, Pierre;
Procyk, Emmanuel;
Quilodran, René;
Dominey, Peter Ford

Publication type:

Article

Continuing Education Workshops in Bioinformatics Positively Impact Research and Careers.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004916

By:

Brazas, Michelle D.;
Ouellette, B. F. Francis

Publication type:

Article

Ten Simple Rules for Effective Statistical Practice.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004961

By:

Kass, Robert E.;
Caffo, Brian S.;
Davidian, Marie;
Meng, Xiao-Li;
Yu, Bin;
Reid, Nancy

Publication type:

Article

The Evolutionary Origins of Hierarchy.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pcbi.1004829

By:

Mengistu, Henok;
Huizinga, Joost;
Mouret, Jean-Baptiste;
Clune, Jeff

Publication type:

Article