Works matching IS 1553734X AND DT 2016 AND VI 12 AND IP 1

Results: 46

Spatial Metrics of Tumour Vascular Organisation Predict Radiation Efficacy in a Computational Model.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004712

By:

Scott, Jacob G.;
Fletcher, Alexander G.;
Anderson, Alexander R. A.;
Maini, Philip K.

Publication type:

Article

Adaptive Landscape by Environment Interactions Dictate Evolutionary Dynamics in Models of Drug Resistance.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004710

By:

Ogbunugafor, C. Brandon;
Wylie, C. Scott;
Diakite, Ibrahim;
Weinreich, Daniel M.;
Hartl, Daniel L.

Publication type:

Article

NINJA-OPS: Fast Accurate Marker Gene Alignment Using Concatenated Ribosomes.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004658

By:

Al-Ghalith, Gabriel A.;
Montassier, Emmanuel;
Ward, Henry N.;
Knights, Dan

Publication type:

Article

A Biophysical Model of CRISPR/Cas9 Activity for Rational Design of Genome Editing and Gene Regulation.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004724

By:

Farasat, Iman;
Salis, Howard M.

Publication type:

Article

Does High-Dose Antimicrobial Chemotherapy Prevent the Evolution of Resistance?

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004689

By:

Day, Troy;
Read, Andrew F.

Publication type:

Article

Fluctuating Nonlinear Spring Model of Mechanical Deformation of Biological Particles.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004729

By:

Kononova, Olga;
Snijder, Joost;
Kholodov, Yaroslav;
Marx, Kenneth A.;
Wuite, Gijs J. L.;
Roos, Wouter H.;
Barsegov, Valeri

Publication type:

Article

Modelling Feedback Excitation, Pacemaker Properties and Sensory Switching of Electrically Coupled Brainstem Neurons Controlling Rhythmic Activity.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004702

By:

Hull, Michael J.;
Soffe, Stephen R.;
Willshaw, David J.;
Roberts, Alan

Publication type:

Article

Ten Simple Rules for a Bioinformatics Journal Club.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004526

By:

Lonsdale, Andrew;
Sietsma Penington, Jocelyn;
Rice, Timothy;
Walker, Michael;
Dashnow, Harriet

Publication type:

Article

Spontaneous Decoding of the Timing and Content of Human Object Perception from Cortical Surface Recordings Reveals Complementary Information in the Event-Related Potential and Broadband Spectral Change.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004660

By:

Miller, Kai J.;
Schalk, Gerwin;
Hermes, Dora;
Ojemann, Jeffrey G.;
Rao, Rajesh P. N.

Publication type:

Article

Correction: Comprehensive Sieve Analysis of Breakthrough HIV-1 Sequences in the RV144 Vaccine Efficacy Trial.

Published in:

2016

By:

null, null

Publication type:

Correction Notice

Coenzyme Q Biosynthesis: Evidence for a Substrate Access Channel in the FAD-Dependent Monooxygenase Coq6.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004690

By:

Ismail, Alexandre;
Leroux, Vincent;
Smadja, Myriam;
Gonzalez, Lucie;
Lombard, Murielle;
Pierrel, Fabien;
Mellot-Draznieks, Caroline;
Fontecave, Marc

Publication type:

Article

Fast and Rigorous Computation of Gene and Pathway Scores from SNP-Based Summary Statistics.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004714

By:

Lamparter, David;
Marbach, Daniel;
Rueedi, Rico;
Kutalik, Zoltán;
Bergmann, Sven

Publication type:

Article

Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5’-Phosphate Production in E. coli.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004705

By:

Oberhardt, Matthew A.;
Zarecki, Raphy;
Reshef, Leah;
Xia, Fangfang;
Duran-Frigola, Miquel;
Schreiber, Rachel;
Henry, Christopher S.;
Ben-Tal, Nir;
Dwyer, Daniel J.;
Gophna, Uri;
Ruppin, Eytan

Publication type:

Article

Binding Site Identification and Flexible Docking of Single Stranded RNA to Proteins Using a Fragment-Based Approach.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004697

By:

Chauvot de Beauchene, Isaure;
de Vries, Sjoerd J.;
Zacharias, Martin

Publication type:

Article

A Thermodynamic Model of Monovalent Cation Homeostasis in the Yeast Saccharomyces cerevisiae.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004703

By:

Gerber, Susanne;
Fröhlich, Martina;
Lichtenberg-Fraté, Hella;
Shabala, Sergey;
Shabala, Lana;
Klipp, Edda

Publication type:

Article

Correction: Neurally Encoding Time for Olfactory Navigation.

Published in:

2016

By:

null, null

Publication type:

Correction Notice

Model-Based Comprehensive Analysis of School Closure Policies for Mitigating Influenza Epidemics and Pandemics.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004681

By:

Fumanelli, Laura;
Ajelli, Marco;
Merler, Stefano;
Ferguson, Neil M.;
Cauchemez, Simon

Publication type:

Article

Probing the Limits to MicroRNA-Mediated Control of Gene Expression.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004715

By:

Martirosyan, Araks;
Figliuzzi, Matteo;
Marinari, Enzo;
De Martino, Andrea

Publication type:

Article

A Computational Model for the AMPA Receptor Phosphorylation Master Switch Regulating Cerebellar Long-Term Depression.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004664

By:

Gallimore, Andrew R.;
Aricescu, A. Radu;
Yuzaki, Michisuke;
Calinescu, Radu

Publication type:

Article

Social Norms of Cooperation in Small-Scale Societies.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004709

By:

Santos, Fernando P.;
Santos, Francisco C.;
Pacheco, Jorge M.

Publication type:

Article

Brain Connectivity Dissociates Responsiveness from Drug Exposure during Propofol-Induced Transitions of Consciousness.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004669

By:

Chennu, Srivas;
O’Connor, Stuart;
Adapa, Ram;
Menon, David K.;
Bekinschtein, Tristan A.

Publication type:

Article

Optimal Population-Level Infection Detection Strategies for Malaria Control and Elimination in a Spatial Model of Malaria Transmission.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004707

By:

Gerardin, Jaline;
Bever, Caitlin A.;
Hamainza, Busiku;
Miller, John M.;
Eckhoff, Philip A.;
Wenger, Edward A.

Publication type:

Article

Computational Modeling, Formal Analysis, and Tools for Systems Biology.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004591

By:

Bartocci, Ezio;
Lió, Pietro

Publication type:

Article

A Quick Introduction to Version Control with Git and GitHub.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004668

By:

Blischak, John D.;
Davenport, Emily R.;
Wilson, Greg

Publication type:

Article

Correction: Depletion of the Chromatin Looping Proteins CTCF and Cohesin Causes Chromatin Compaction: Insight into Chromatin Folding by Polymer Modelling.

Published in:

2016

By:

null, null

Publication type:

Correction Notice

Discovery of Influenza A Virus Sequence Pairs and Their Combinations for Simultaneous Heterosubtypic Targeting that Hedge against Antiviral Resistance.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004663

By:

Wee, Keng Boon;
Lee, Raphael Tze Chuen;
Lin, Jing;
Pramono, Zacharias Aloysius Dwi;
Maurer-Stroh, Sebastian

Publication type:

Article

Measuring Integrated Information from the Decoding Perspective.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004654

By:

Oizumi, Masafumi;
Amari, Shun-ichi;
Yanagawa, Toru;
Fujii, Naotaka;
Tsuchiya, Naotsugu

Publication type:

Article

Evolutionary and Functional Relationships in the Truncated Hemoglobin Family.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004701

By:

Bustamante, Juan P.;
Radusky, Leandro;
Boechi, Leonardo;
Estrin, Darío A.;
ten Have, Arjen;
Martí, Marcelo A.

Publication type:

Article

Asymmetrical Damage Partitioning in Bacteria: A Model for the Evolution of Stochasticity, Determinism, and Genetic Assimilation.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004700

By:

Chao, Lin;
Rang, Camilla Ulla;
Proenca, Audrey Menegaz;
Chao, Jasper Ubirajara

Publication type:

Article

A Network Model to Describe the Terminal Differentiation of B Cells.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004696

By:

Méndez, Akram;
Mendoza, Luis

Publication type:

Article

Consistency of VDJ Rearrangement and Substitution Parameters Enables Accurate B Cell Receptor Sequence Annotation.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004409

By:

Ralph, Duncan K.;
IVMatsen, Frederick A.

Publication type:

Article

The Molecular Basis of Polyunsaturated Fatty Acid Interactions with the Shaker Voltage-Gated Potassium Channel.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004704

By:

Yazdi, Samira;
Stein, Matthias;
Elinder, Fredrik;
Andersson, Magnus;
Lindahl, Erik

Publication type:

Article

Evidence for Functional Groupings of Vibrissae across the Rodent Mystacial Pad.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004109

By:

Hobbs, Jennifer A.;
Towal, R. Blythe;
Hartmann, Mitra J. Z.

Publication type:

Article

Josephin Domain Structural Conformations Explored by Metadynamics in Essential Coordinates.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004699

By:

Deriu, Marco A.;
Grasso, Gianvito;
Tuszynski, Jack A.;
Gallo, Diego;
Morbiducci, Umberto;
Danani, Andrea

Publication type:

Article

Faster Adaptation in Smaller Populations: Counterintuitive Evolution of HIV during Childhood Infection.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004694

By:

Raghwani, Jayna;
Bhatt, Samir;
Pybus, Oliver G.

Publication type:

Article

Model-Based Analysis of Cell Cycle Responses to Dynamically Changing Environments.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004604

By:

Seaton, Daniel D;
Krishnan, J

Publication type:

Article

Correction: Improving Collective Estimations Using Resistance to Social Influence.

Published in:

2016

By:

null, null

Publication type:

Correction Notice

Residual Viremia in Treated HIV+ Individuals.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004677

By:

Conway, Jessica M.;
Perelson, Alan S.

Publication type:

Article

Coarse-Grained Simulations of Topology-Dependent Mechanisms of Protein Unfolding and Translocation Mediated by ClpY ATPase Nanomachines.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004675

By:

Kravats, Andrea N.;
Tonddast-Navaei, Sam;
Stan, George

Publication type:

Article

Neurally Encoding Time for Olfactory Navigation.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004682

By:

Park, In Jun;
Hein, Andrew M.;
Bobkov, Yuriy V.;
Reidenbach, Matthew A.;
Ache, Barry W.;
Principe, Jose C.

Publication type:

Article

Transient Accumulation of NO2- and N2O during Denitrification Explained by Assuming Cell Diversification by Stochastic Transcription of Denitrification Genes.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004621

By:

Hassan, Junaid;
Qu, Zhi;
Bergaust, Linda L.;
Bakken, Lars R.

Publication type:

Article

Long-Lasting Sparks: Multi-Metastability and Release Competition in the Calcium Release Unit Network.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004671

By:

Song, Zhen;
Karma, Alain;
Weiss, James N.;
Qu, Zhilin

Publication type:

Article

Hydrodynamic Radii of Intrinsically Disordered Proteins Determined from Experimental Polyproline II Propensities.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004686

By:

Tomasso, Maria E.;
Tarver, Micheal J.;
Devarajan, Deepa;
Whitten, Steven T.

Publication type:

Article

Pore Structure and Synergy in Antimicrobial Peptides of the Magainin Family.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004570

By:

Pino-Angeles, Almudena;
IIILeveritt, John M.;
Lazaridis, Themis

Publication type:

Article

Coordinating Role of RXRα in Downregulating Hepatic Detoxification during Inflammation Revealed by Fuzzy-Logic Modeling.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004431

By:

Keller, Roland;
Klein, Marcus;
Thomas, Maria;
Dräger, Andreas;
Metzger, Ute;
Templin, Markus F.;
Joos, Thomas O.;
Thasler, Wolfgang E.;
Zell, Andreas;
Zanger, Ulrich M.

Publication type:

Article

K+ Block Is the Mechanism of Functional Asymmetry in Bacterial Nav Channels.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004482

By:

Ngo, Van;
Wang, Yibo;
Haas, Stephan;
Noskov, Sergei Y.;
Farley, Robert A.

Publication type:

Article