Works matching DE "VIRUS phylogeny"

Results: 380

Direct sequencing and analysis of the genomes of newly emerging GII.17 norovirus strains in South China.

Published in:

Journal of Applied Microbiology, 2016, v. 120, n. 4, p. 1130, doi. 10.1111/jam.13052

By:

Xue, L.;
Cai, W.;
Wu, Q.;
Zhang, J.;
Guo, W.

Publication type:

Article

Molecular Evolution of MERS Coronavirus: Dromedaries as a Recent Intermediate Host or Long-Time Animal Reservoir?

Published in:

International Journal of Molecular Sciences, 2017, v. 18, n. 10, p. 2138, doi. 10.3390/ijms18102138

By:

Lau, Terrence C. K.;
Wong, Antonio C. P.;
Lau, Susanna K. P.;
Woo, Patrick C. Y.

Publication type:

Article

Reassortant swine influenza viruses isolated in Japan contain genes from pandemic A(H1N1) 2009.

Published in:

Microbiology & Immunology, 2014, v. 58, n. 6, p. 327, doi. 10.1111/1348-0421.12152

By:

Kanehira, Katsushi;
Takemae, Nobuhiro;
Uchida, Yuko;
Hikono, Hirokazu;
Saito, Takehiko

Publication type:

Article

Incidence and molecular characterization of hepatitis A viruses in Korean surface water between 2007 and 2010.

Published in:

Microbiology & Immunology, 2014, v. 58, n. 6, p. 342, doi. 10.1111/1348-0421.12151

By:

Lee, Gyu‐Cheol;
Kim, Min‐Jeong;
Nam, Sehee;
Lee, Chan Hee

Publication type:

Article

Endogenous retroviruses of non-avian/mammalian vertebrates illuminate diversity and deep history of retroviruses.

Published in:

PLoS Pathogens, 2018, v. 14, n. 6, p. 1, doi. 10.1371/journal.ppat.1007072

By:

Xu, Xiaoyu;
Zhao, Huayao;
Gong, Zhen;
Han, Guan-Zhu

Publication type:

Article

Evolution of echovirus 11 in a chronically infected immunodeficient patient.

Published in:

PLoS Pathogens, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.ppat.1006943

By:

Laassri, Majid;
Zagorodnyaya, Tatiana;
Hassin-Baer, Sharon;
Handsher, Rachel;
Sofer, Danit;
Weil, Merav;
Karagiannis, Konstantinos;
Simonyan, Vahan;
Chumakov, Konstantin;
Shulman, Lester

Publication type:

Article

Measuring Asymmetry in Time-Stamped Phylogenies.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 7, p. 1, doi. 10.1371/journal.pcbi.1004312

By:

Dearlove, Bethany L.;
Frost, Simon D. W.

Publication type:

Article

Viral Phylodynamics.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002947

By:

Volz, Erik M.;
Koelle, Katia;
Bedford, Trevor

Publication type:

Article

Simple Epidemiological Dynamics Explain Phylogenetic Clustering of HIV from Patients with Recent Infection.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002552

By:

Volz, Erik M.;
Koopman, James S.;
Ward, Melissa J.;
Brown, Andrew Leigh;
Frost, Simon D. W.

Publication type:

Article

Low HIV-1 transmitted drug resistance in Bulgaria against a background of high clade diversity.

Published in:

Journal of Antimicrobial Chemotherapy (JAC), 2015, v. 70, n. 6, p. 1874, doi. 10.1093/jac/dkv011

By:

Alexiev, Ivailo;
Shankar, Anupama;
Wensing, A. M. J.;
Beshkov, Danail;
Elenkov, Ivaylo;
Stoycheva, Mariyana;
Nikolova, Daniela;
Nikolova, Maria;
Switzer, William M.

Publication type:

Article

Molecular characterization of Chlorella cultures of the National Institute for Environmental Studies culture collection with description of Micractinium inermum sp. nov., Didymogenes sphaerica sp. nov., and Didymogenes soliella sp. nov. ( Chlorellaceae, Trebouxiophyceae)

Published in:

Phycological Research, 2013, v. 61, n. 2, p. 124, doi. 10.1111/pre.12010

By:

Hoshina, Ryo;
Fujiwara, Yuko

Publication type:

Article

Genetic and phylogenetic analysis of the outer capsid protein genes of Indian isolates of bluetongue virus serotype-16.

Published in:

Veterinary World, 2018, v. 11, n. 8, p. 1025, doi. 10.14202/vetworld.2018.1025-1029

By:

Saxena, Arpit;
Biswas, Sanchay K.;
Chand, Karam;
Naskar, Jishnu;
Chauhan, Ankita;
Mohd, Gulam;
Tewari, Neha;
Kurat-ul-Ain;
Ramakrishnan, Muthannan A.;
Pandey, Awadh Bihari

Publication type:

Article

Identification and characterization of endogenous viral elements for the three key schistosomes of humans.

Published in:

Pakistan Journal of Pharmaceutical Sciences, 2015, v. 28, p. 375

By:

Na Li;
Quhuan Li

Publication type:

Article

Whole-genome sequencing analysis of human bocavirus detected in South Korea.

Published in:

2018

By:

Kang, L. H.;
Won, Y. J.;
Lee, A. R.;
Lee, S. G.;
Cho, H. G.;
Park, Y. J.;
Han, J. I.;
Paik, S. Y.

Publication type:

journal article

Molecular detection of influenza A(H1N1)pdm09 viruses with M genes from human pandemic strains among Nigerian pigs, 2013-2015: implications and associated risk factors.

Published in:

2017

By:

ADEOLA, O. A.;
OLUGASA, B. O.;
EMIKPE, B. O.

Publication type:

journal article

Cowpox in a human, Russia, 2015.

Published in:

2017

By:

POPOVA, A. Y.;
MAKSYUTOV, R. A.;
TARANOV, O. S.;
TREGUBCHAK, T. V.;
ZAIKOVSKAYA, A. V.;
SERGEEV, A. A.;
VLASHCHENKO, I. V.;
BODNEV, S. A.;
TERNOVOI, V. A.;
ALEXANDROVA, N. S.;
TARASOV, A. L.;
KONOVALOVA, N. V.;
KOROLEVA, A. A.;
BULYCHEV, L. E.;
PYANKOV, O. V.;
DEMINA, Y. V.;
AGAFONOV, A. P.;
SHCHELKUNOV, S. N.;
MIHEEV, V. N.

Publication type:

journal article

First detection and molecular characterization of Nebovirus in Brazil.

Published in:

2016

By:

CANDIDO, M.;
ALENCAR, A. L. F.;
ALMEIDA-QUEIROZ, S. R.;
BUZINARO, M. G.;
MUNIN, F. S.;
GODOY, S. H. S.;
LIVONESI, M. C.;
FERNANDES, A. M.;
SOUSA, R. L. M.

Publication type:

journal article

Epidemiology and molecular diversity of rabies viruses in Bulgaria.

Published in:

Epidemiology & Infection, 2014, v. 142, n. 4, p. 871, doi. 10.1017/S0950268813001556

By:

ROBARDET, E.;
ILIEVA, D.;
ILIEV, E.;
GAGNEV, E.;
PICARD-MEYER, E.;
CLIQUET, F.

Publication type:

Article

Full-length genome and molecular characterization of dengue virus serotype 2 isolated from an imported patient from Myanmar.

Published in:

Virology Journal, 2018, v. 15, n. 1, p. N.PAG, doi. 10.1186/s12985-018-1043-2

By:

Zeng, Zhaoping;
Shi, Jiandong;
Mo, Ling;
Hu, Ningzhu;
Sun, Jing;
Wu, Meini;
Hu, Yunzhang;
Guo, Xiaofang;
Zhou, Hongning

Publication type:

Article

Differences in genome characters and cell tropisms between two chikungunya isolates of Asian lineage and Indian Ocean lineage.

Published in:

Virology Journal, 2018, v. 15, n. 1, p. N.PAG, doi. 10.1186/s12985-018-1024-5

By:

Huang, Yalan;
Wang, Miao;
Yang, Fan;
Wu, Chunli;
Huang, Dana;
Xiong, Linghong;
Cheng, Jinquan;
Zhang, Renli;
Zhang, Xiaomin;
Wan, Chengsong

Publication type:

Article

Searching for virus phylotypes.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 561, doi. 10.1093/bioinformatics/btt010

By:

Chevenet, François;
Jung, Matthieu;
Peeters, Martine;
de Oliveira, Tulio;
Gascuel, Olivier

Publication type:

Article

Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families.

Published in:

PLoS Pathogens, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.ppat.1006215

By:

Geoghegan, Jemma L.;
Duchêne, Sebastián;
Holmes, Edward C.

Publication type:

Article

Extensive virologic and immunologic characterization in an HIV-infected individual following allogeneic stem cell transplant and analytic cessation of antiretroviral therapy: A case study.

Published in:

2017

By:

Cummins, Nathan W.;
Rizza, Stacey;
Litzow, Mark R.;
Hua, Stephane;
Lee, Guinevere Q.;
Einkauf, Kevin;
Chun, Tae-Wook;
Rhame, Frank;
Baker, Jason V.;
Busch, Michael P.;
Chomont, Nicolas;
Dean, Patrick G.;
Fromentin, Rémi;
Haase, Ashley T.;
Hampton, Dylan;
Keating, Sheila M.;
Lada, Steven M.;
Lee, Tzong-Hae;
Natesampillai, Sekar;
Richman, Douglas D.

Publication type:

journal article

Genome-wide analysis of synonymous codon usage in Huaiyangshan virus and other bunyaviruses.

Published in:

Journal of Basic Microbiology, 2015, v. 55, n. 12, p. 1374, doi. 10.1002/jobm.201500233

By:

Luo, Xuelian;
Liu, Qingzhen;
Xiong, Yanwen;
Ye, Changyun;
Jin, Dong;
Xu, Jianguo

Publication type:

Article

Complete genome sequences of porcine reproductive and respiratory syndrome viruses: perspectives on their temporal and spatial dynamics.

Published in:

Molecular Biology Reports, 2013, v. 40, n. 12, p. 6843, doi. 10.1007/s11033-013-2802-1

By:

Yoon, Sook Hee;
Kim, Hyekwon;
Kim, Jaemin;
Lee, Hak-Kyo;
Park, Bongkyun;
Kim, Heebal

Publication type:

Article

Phylogeny of Egyptian isolates of Cucumber mosaic virus (CMV) and Tomato mosaic virus (ToMV) infecting Solanum lycopersicum.

Published in:

European Journal of Plant Pathology, 2017, v. 149, n. 1, p. 219, doi. 10.1007/s10658-017-1164-2

By:

Rabie, Mona;
Ratti, Claudio;
Calassanzio, Matteo;
Aleem, Engy;
Fattouh, Faiza

Publication type:

Article

Occurrence and phylogenetic analysis of allexiviruses identified on garlic from China, Spain and Poland commercially available on the polish retail market.

Published in:

European Journal of Plant Pathology, 2017, v. 149, n. 1, p. 227, doi. 10.1007/s10658-017-1171-3

By:

Bereda, Maria;
Paduch-Cichal, Elżbieta;
Dąbrowska, Elżbieta

Publication type:

Article

Molecular characterization of two divergent variants of sugarcane bacilliform viruses infecting sugarcane in China.

Published in:

European Journal of Plant Pathology, 2016, v. 145, n. 2, p. 375, doi. 10.1007/s10658-015-0851-0

By:

Sun, Sheng-Ren;
Damaj, Mona;
Alabi, Olufemi;
Wu, Xiao-Bin;
Erik Mirkov, T.;
Fu, Hua-Ying;
Chen, Ru-Kai;
Gao, San-Ji

Publication type:

Article

Analysis of the coat protein gene of Indian Potato virus X isolates for identification of strain groups and determination of the complete genome sequence of two isolates.

Published in:

European Journal of Plant Pathology, 2016, v. 145, n. 2, p. 447, doi. 10.1007/s10658-016-0858-1

By:

Jeevalatha, Arjunan;
Kaundal, Priyanka;
Kumar, Ravinder;
Raigond, Baswaraj;
Gupta, Mohit;
Kumar, Ashwani;
Sharma, Sanjeev;
Sagar, Vinay;
Nagesh, Mandadi;
Singh, Bir

Publication type:

Article

Identification and distribution of Botryosphaeriaceae species associated with blueberry stem blight in China.

Published in:

European Journal of Plant Pathology, 2015, v. 143, n. 4, p. 737, doi. 10.1007/s10658-015-0724-6

By:

Xu, Chengnan;
Zhang, Hongjun;
Zhou, Zongshan;
Hu, Tongle;
Wang, Shutong;
Wang, Yanan;
Cao, Keqiang

Publication type:

Article

Molecular characterization of the coat protein gene of prunus necrotic ringspot virus infecting peach in Montenegro.

Published in:

European Journal of Plant Pathology, 2015, v. 143, n. 4, p. 881, doi. 10.1007/s10658-015-0747-z

By:

Zindović, J.;
Autonell, C.;
Ratti, C.

Publication type:

Article

Genetic diversity of viruses associated with sugarcane mosaic disease of sugarcane inter-specific hybrids in China.

Published in:

European Journal of Plant Pathology, 2015, v. 143, n. 2, p. 351, doi. 10.1007/s10658-015-0687-7

By:

Zhang, Yuliang;
Huang, Qixing;
Yin, Guohua;
Jia, Ruizong;
Lee, Samantha;
Xiong, Guoru;
Yu, Naitong;
Pennerman, Kayla;
Liu, Zhixin;
Zhang, Shuzhen

Publication type:

Article

Phylogenetic analysis of two genotype 3 Hepatitis E viruses from wild boar, Italy.

Published in:

Virus Genes, 2018, v. 54, n. 6, p. 812, doi. 10.1007/s11262-018-1597-5

By:

De Sabato, Luca;
Vaccari, Gabriele;
Lemey, Philippe;
Amoroso, Maria Grazia;
Fusco, Giovanna;
Ianiro, Giovanni;
Di Bartolo, Ilaria

Publication type:

Article

Complete genome sequence of a novel sea otterpox virus.

Published in:

Virus Genes, 2018, v. 54, n. 6, p. 756, doi. 10.1007/s11262-018-1594-8

By:

Jacob, Jessica M.;
Subramaniam, Kuttichantran;
Tu, Shin-Lin;
Nielsen, Ole;
Tuomi, Pamela A.;
Upton, Chris;
Waltzek, Thomas B.

Publication type:

Article

Phylogenetic comparison of the VP7, VP4, VP6, and NSP4 genes of rotaviruses isolated from children in Nizhny Novgorod, Russia, 2015-2016, with cogent genes of the Rotarix and RotaTeq vaccine strains.

Published in:

Virus Genes, 2018, v. 54, n. 2, p. 225, doi. 10.1007/s11262-017-1529-9

By:

Morozova, O. V.;
Sashina, T. A.;
Epifanova, N. V.;
Zverev, V. V.;
Kashnikov, A. U.;
Novikova, N. A.

Publication type:

Article

Phylogenetic and evolutionary analyses of dengue viruses isolated in Jakarta, Indonesia.

Published in:

Virus Genes, 2017, v. 53, n. 6, p. 778, doi. 10.1007/s11262-017-1474-7

By:

Lestari, C.;
Yohan, Benediktus;
Yunita, Anisa;
Meutiawati, Febrina;
Hayati, Rahma;
Trimarsanto, Hidayat;
Sasmono, R.

Publication type:

Article

Phylogenetic analysis of Puumala virus strains from Central Europe highlights the need for a full-genome perspective on hantavirus evolution.

Published in:

Virus Genes, 2017, v. 53, n. 6, p. 913, doi. 10.1007/s11262-017-1484-5

By:

Szabó, Róbert;
Radosa, Lukáš;
Ličková, Martina;
Sláviková, Monika;
Heroldová, Marta;
Stanko, Michal;
Pejčoch, Milan;
Osterberg, Anja;
Laenen, Lies;
Schex, Susanne;
Ulrich, Rainer;
Essbauer, Sandra;
Maes, Piet;
Klempa, Boris

Publication type:

Article

Detection of a new species of torque teno mini virus from the gingival epithelium of patients with periodontitis.

Published in:

Virus Genes, 2017, v. 53, n. 6, p. 823, doi. 10.1007/s11262-017-1505-4

By:

Zhang, Yu;
Li, Fei;
Chen, Xi;
Shan, Tong-Ling;
Deng, Xu-Tao;
Delwart, Eric;
Feng, Xi-Ping

Publication type:

Article

Phylogenetic analysis of peste des petits ruminants virus from outbreaks in Turkey during 2008-2012.

Published in:

Turkish Journal of Biology, 2014, v. 38, n. 5, p. 671, doi. 10.3906/biy-1401-28

By:

GÜLER, Leyla;
ŞEVİK, Murat;
HASÖKSÜZ, Mustafa

Publication type:

Article

Going to Bat(s) for Studies of Disease Tolerance.

Published in:

Frontiers in Immunology, 2018, p. N.PAG, doi. 10.3389/fimmu.2018.02112

By:

Mandl, Judith N.;
Schneider, Caitlin;
Schneider, David S.;
Baker, Michelle L.

Publication type:

Article

Genetic diversity of hepatitis C virus in Ethiopia.

Published in:

PLoS ONE, 2017, v. 12, n. 6, p. 1, doi. 10.1371/journal.pone.0179064

By:

Hundie, Gadissa Bedada;
Raj, V. Stalin;
GebreMichael, Daniel;
Pas, Suzan D.;
Haagmans, Bart L.

Publication type:

Article

Molecular characterization, tissue tropism, and genetic variability of the novel Mupapillomavirus type HPV204 and phylogenetically related types HPV1 and HPV63.

Published in:

PLoS ONE, 2017, v. 12, n. 4, p. 1, doi. 10.1371/journal.pone.0175892

By:

Šterbenc, Anja;
Hošnjak, Lea;
Chouhy, Diego;
Bolatti, Elisa M.;
Oštrbenk, Anja;
Seme, Katja;
Kocjan, Boštjan J.;
Luzar, Boštjan;
Giri, Adriana A.;
Poljak, Mario

Publication type:

Article

Phylogenetic relationships of the HA and NA genes between vaccine and seasonal influenza A(H3N2) strains in Korea.

Published in:

PLoS ONE, 2017, v. 12, n. 3, p. 1, doi. 10.1371/journal.pone.0172059

By:

Kim, Jin Il;
Lee, Ilseob;
Park, Sehee;
Bae, Joon-Yong;
Yoo, Kirim;
Cheong, Hee Jin;
Noh, Ji Yun;
Hong, Kyung Wook;
Lemey, Philippe;
Vrancken, Bram;
Kim, Juwon;
Nam, Misun;
Yun, Soo-Hyeon;
Cho, Woo In;
Song, Joon Young;
Kim, Woo Joo;
Park, Mee Sook;
Song, Jin-Won;
Kee, Sun-Ho;
Song, Ki-Joon

Publication type:

Article

Identification of a large, fast-expanding HIV-1 subtype B transmission cluster among MSM in Valencia, Spain.

Published in:

PLoS ONE, 2017, v. 12, n. 2, p. 1, doi. 10.1371/journal.pone.0171062

By:

Patiño-Galindo, Juan Ángel;
Torres-Puente, Manoli;
Bracho, María Alma;
Alastrué, Ignacio;
Juan, Amparo;
Navarro, David;
Galindo, María José;
Gimeno, Concepción;
Ortega, Enrique;
González-Candelas, Fernando

Publication type:

Article

Identification of Novel Betaherpesviruses in Iberian Bats Reveals Parallel Evolution.

Published in:

PLoS ONE, 2016, v. 11, n. 12, p. 1, doi. 10.1371/journal.pone.0169153

By:

Pozo, Francisco;
Juste, Javier;
Vázquez-Morón, Sonia;
Aznar-López, Carolina;
Ibáñez, Carlos;
Garin, Inazio;
Aihartza, Joxerra;
Casas, Inmaculada;
Tenorio, Antonio;
Echevarría, Juan Emilio

Publication type:

Article

Spatial and Temporal Phylogeny of Border Disease Virus in Pyrenean Chamois (Rupicapra p. pyrenaica).

Published in:

PLoS ONE, 2016, v. 11, n. 12, p. 1, doi. 10.1371/journal.pone.0168232

By:

Luzzago, Camilla;
Ebranati, Erika;
Cabezón, Oscar;
Fernández-Sirera, Laura;
Lavín, Santiago;
Rosell, Rosa;
Veo, Carla;
Rossi, Luca;
Cavallero, Serena;
Lanfranchi, Paolo;
Marco, Ignasi;
Zehender, Gianguglielmo

Publication type:

Article

Mixed Infections of Four Viruses, the Incidence and Phylogenetic Relationships of Sweet Potato Chlorotic Fleck Virus (Betaflexiviridae) Isolates in Wild Species and Sweetpotatoes in Uganda and Evidence of Distinct Isolates in East Africa.

Published in:

PLoS ONE, 2016, v. 11, n. 12, p. 1, doi. 10.1371/journal.pone.0167769

By:

Tugume, Arthur K.;
Mukasa, Settumba B.;
Valkonen, Jari P. T.

Publication type:

Article

First Molecular Characterization of Bovine Leukemia Virus Infections in the Caribbean.

Published in:

PLoS ONE, 2016, v. 11, n. 12, p. 1, doi. 10.1371/journal.pone.0168379

By:

Yang, Yi;
Kelly, Patrick John;
Bai, Jianfa;
Zhang, Rong;
Wang, Chengming

Publication type:

Article

Fast Dissemination of New HIV-1 CRF02/A1 Recombinants in Pakistan.

Published in:

PLoS ONE, 2016, v. 11, n. 12, p. 1, doi. 10.1371/journal.pone.0167839

By:

Chen, Yue;
Hora, Bhavna;
DeMarco, Todd;
Shah, Sharaf Ali;
Ahmed, Manzoor;
Sanchez, Ana M.;
Su, Chang;
Carter, Meredith;
Stone, Mars;
Hasan, Rumina;
Hasan, Zahra;
Busch, Michael P.;
Denny, Thomas N.;
Gao, Feng

Publication type:

Article

Deciphering Multiplicity of HIV-1C Infection: Transmission of Closely Related Multiple Viral Lineages.

Published in:

PLoS ONE, 2016, v. 11, n. 11, p. 1, doi. 10.1371/journal.pone.0166746

By:

Novitsky, Vlad;
Moyo, Sikhulile;
Wang, Rui;
Gaseitsiwe, Simani;
Essex, M.

Publication type:

Article