Works matching IS 1553734X AND DT 2015 AND VI 11 AND IP 5

Results: 48

Power Law Scaling in Human and Empty Room MEG Recordings.

Published in:

2015

By:

Kitzbichler, Manfred G.;
Bullmore, Edward T.

Publication type:

Letter to the Editor

Experimental and Computational Analysis of a Large Protein Network That Controls Fat Storage Reveals the Design Principles of a Signaling Network.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004264

By:

Al-Anzi, Bader;
Arpp, Patrick;
Gerges, Sherif;
Ormerod, Christopher;
Olsman, Noah;
Zinn, Kai

Publication type:

Article

Model-Free RNA Sequence and Structure Alignment Informed by SHAPE Probing Reveals a Conserved Alternate Secondary Structure for 16S rRNA.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004126

By:

Lavender, Christopher A.;
Lorenz, Ronny;
Zhang, Ge;
Tamayo, Rita;
Hofacker, Ivo L.;
Weeks, Kevin M.

Publication type:

Article

Computational Modeling of Seizure Dynamics Using Coupled Neuronal Networks: Factors Shaping Epileptiform Activity.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004209

By:

Naze, Sebastien;
Bernard, Christophe;
Jirsa, Viktor

Publication type:

Article

Metabolic Needs and Capabilities of Toxoplasma gondii through Combined Computational and Experimental Analysis.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004261

By:

Tymoshenko, Stepan;
Oppenheim, Rebecca D.;
Agren, Rasmus;
Nielsen, Jens;
Soldati-Favre, Dominique;
Hatzimanikatis, Vassily

Publication type:

Article

Estimating the In Vivo Killing Efficacy of Cytotoxic T Lymphocytes across Different Peptide-MHC Complex Densities.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004178

By:

Garcia, Victor;
Richter, Kirsten;
Graw, Frederik;
Oxenius, Annette;
Regoes, Roland R.

Publication type:

Article

Comment on “Broadband Criticality of Human Brain Network Synchronization” by Kitzbichler MG, Smith ML, Christensen SR, Bullmore E (2009) PLoS Comput Biol 5: e1000314.

Published in:

2015

By:

Farmer, Simon

Publication type:

Letter to the Editor

Quantification of Interactions between Dynamic Cellular Network Functionalities by Cascaded Layering.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004235

By:

Prescott, Thomas P.;
Lang, Moritz;
Papachristodoulou, Antonis

Publication type:

Article

Geometrical and Mechanical Properties Control Actin Filament Organization.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004245

By:

Letort, Gaëlle;
Politi, Antonio Z.;
Ennomani, Hajer;
Théry, Manuel;
Nedelec, Francois;
Blanchoin, Laurent

Publication type:

Article

Metapopulation Persistence in Random Fragmented Landscapes.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004251

By:

Grilli, Jacopo;
Barabás, György;
Allesina, Stefano

Publication type:

Article

Optimal Census by Quorum Sensing.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004238

By:

Taillefumier, Thibaud;
Wingreen, Ned S.

Publication type:

Article

SeqGL Identifies Context-Dependent Binding Signals in Genome-Wide Regulatory Element Maps.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004271

By:

Setty, Manu;
Leslie, Christina S.

Publication type:

Article

Inferring Horizontal Gene Transfer.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004095

By:

Ravenhall, Matt;
Škunca, Nives;
Lassalle, Florent;
Dessimoz, Christophe

Publication type:

Article

Predicting Peptide-Mediated Interactions on a Genome-Wide Scale.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004248

By:

Chen, T. Scott;
Petrey, Donald;
Garzon, Jose Ignacio;
Honig, Barry

Publication type:

Article

A Multiscale Model Evaluates Screening for Neoplasia in Barrett’s Esophagus.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004272

By:

Curtius, Kit;
Hazelton, William D.;
Jeon, Jihyoun;
Luebeck, E. Georg

Publication type:

Article

Causal Modeling of Cancer-Stromal Communication Identifies PAPPA as a Novel Stroma-Secreted Factor Activating NFκB Signaling in Hepatocellular Carcinoma.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004293

By:

Engelmann, Julia C.;
Amann, Thomas;
Ott-Rötzer, Birgitta;
Nützel, Margit;
Reinders, Yvonne;
Reinders, Jörg;
Thasler, Wolfgang E.;
Kristl, Theresa;
Teufel, Andreas;
Huber, Christian G.;
Oefner, Peter J.;
Spang, Rainer;
Hellerbrand, Claus

Publication type:

Article

Mechanisms of Left-Right Coordination in Mammalian Locomotor Pattern Generation Circuits: A Mathematical Modeling View.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004270

By:

Molkov, Yaroslav I.;
Bacak, Bartholomew J.;
Talpalar, Adolfo E.;
Rybak, Ilya A.

Publication type:

Article

Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004221

By:

Babaei, Sepideh;
Mahfouz, Ahmed;
Hulsman, Marc;
Lelieveldt, Boudewijn P. F.;
de Ridder, Jeroen;
Reinders, Marcel

Publication type:

Article

Predicted Role of NAD Utilization in the Control of Circadian Rhythms during DNA Damage Response.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004144

By:

Luna, Augustin;
McFadden, Geoffrey B.;
Aladjem, Mirit I.;
Kohn, Kurt W.

Publication type:

Article

A Dynamical Phyllotaxis Model to Determine Floral Organ Number.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004145

By:

Kitazawa, Miho S.;
Fujimoto, Koichi

Publication type:

Article

Correction: GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training.

Published in:

2015

By:

Attwood, Teresa K.;
Bongcam-Rudloff, Erik;
Brazas, Michelle E.;
Corpas, Manuel;
Gaudet, Pascale;
Lewitter, Fran;
Mulder, Nicola;
Palagi, Patricia M.;
Schneider, Maria Victoria;
van Gelder, Celia W. G.;
null, null

Publication type:

Correction Notice

Maintaining Homeostasis by Decision-Making.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004301

By:

Korn, Christoph W.;
Bach, Dominik R.

Publication type:

Article

Understanding Voltage Gating of Providencia stuartii Porins at Atomic Level.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004255

By:

Song, Wanling;
Bajaj, Harsha;
Nasrallah, Chady;
Jiang, Hualiang;
Winterhalter, Mathias;
Colletier, Jacques-Philippe;
Xu, Yechun

Publication type:

Article

Modelling the Effects of Electrical Coupling between Unmyelinated Axons of Brainstem Neurons Controlling Rhythmic Activity.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004240

By:

Hull, Michael J.;
Soffe, Stephen R.;
Willshaw, David J.;
Roberts, Alan

Publication type:

Article

Memory Storage Fidelity in the Hippocampal Circuit: The Role of Subregions and Input Statistics.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004250

By:

Neher, Torsten;
Cheng, Sen;
Wiskott, Laurenz

Publication type:

Article

The Opponent Channel Population Code of Sound Location Is an Efficient Representation of Natural Binaural Sounds.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004294

By:

Młynarski, Wiktor

Publication type:

Article

Structural Conversion of Aβ<sub>17–42</sub> Peptides from Disordered Oligomers to U-Shape Protofilaments via Multiple Kinetic Pathways.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004258

By:

Cheon, Mookyung;
Hall, Carol K.;
Chang, Iksoo

Publication type:

Article

Context-Dependent Role of Mitochondrial Fusion-Fission in Clonal Expansion of mtDNA Mutations.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004183

By:

Tam, Zhi Yang;
Gruber, Jan;
Halliwell, Barry;
Gunawan, Rudiyanto

Publication type:

Article

The Effect of Incentives and Meta-incentives on the Evolution of Cooperation.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004232

By:

Okada, Isamu;
Yamamoto, Hitoshi;
Toriumi, Fujio;
Sasaki, Tatsuya

Publication type:

Article

Integrated Stochastic Model of DNA Damage Repair by Non-homologous End Joining and p53/p21- Mediated Early Senescence Signalling.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004246

By:

Dolan, David W. P.;
Zupanic, Anze;
Nelson, Glyn;
Hall, Philip;
Miwa, Satomi;
Kirkwood, Thomas B. L.;
Shanley, Daryl P.

Publication type:

Article

Improving 3D Genome Reconstructions Using Orthologous and Functional Constraints.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004298

By:

Diament, Alon;
Tuller, Tamir

Publication type:

Article

Native Contact Density and Nonnative Hydrophobic Effects in the Folding of Bacterial Immunity Proteins.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004260

By:

Chen, Tao;
Chan, Hue Sun

Publication type:

Article

Sharing and Specificity of Co-expression Networks across 35 Human Tissues.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004220

By:

Pierson, Emma;
null, null;
Koller, Daphne;
Battle, Alexis;
Mostafavi, Sara

Publication type:

Article

Sparse and Compositionally Robust Inference of Microbial Ecological Networks.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004226

By:

Kurtz, Zachary D.;
Müller, Christian L.;
Miraldi, Emily R.;
Littman, Dan R.;
Blaser, Martin J.;
Bonneau, Richard A.

Publication type:

Article

Synaptic Homeostasis and Restructuring across the Sleep-Wake Cycle.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004241

By:

Blanco, Wilfredo;
Pereira, Catia M.;
Cota, Vinicius R.;
Souza, Annie C.;
Rennó-Costa, César;
Santos, Sharlene;
Dias, Gabriella;
Guerreiro, Ana M. G.;
Tort, Adriano B. L.;
Neto, Adrião D.;
Ribeiro, Sidarta

Publication type:

Article

Convex Clustering: An Attractive Alternative to Hierarchical Clustering.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004228

By:

Chen, Gary K.;
Chi, Eric C.;
Ranola, John Michael O.;
Lange, Kenneth

Publication type:

Article

The Hydrophobic Temperature Dependence of Amino Acids Directly Calculated from Protein Structures.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004277

By:

van Dijk, Erik;
Hoogeveen, Arlo;
Abeln, Sanne

Publication type:

Article

Dissecting the Calcium-Induced Differentiation of Human Primary Keratinocytes Stem Cells by Integrative and Structural Network Analyses.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004256

By:

Toufighi, Kiana;
Yang, Jae-Seong;
Luis, Nuno Miguel;
Aznar Benitah, Salvador;
Lehner, Ben;
Serrano, Luis;
Kiel, Christina

Publication type:

Article

Forecasting the 2013–2014 Influenza Season Using Wikipedia.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004239

By:

Hickmann, Kyle S.;
Fairchild, Geoffrey;
Priedhorsky, Reid;
Generous, Nicholas;
Hyman, James M.;
Deshpande, Alina;
Del Valle, Sara Y.

Publication type:

Article

Predicting Cortical Dark/Bright Asymmetries from Natural Image Statistics and Early Visual Transforms.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004268

By:

Cooper, Emily A.;
Norcia, Anthony M.

Publication type:

Article

Regulators Associated with Clinical Outcomes Revealed by DNA Methylation Data in Breast Cancer.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004269

By:

Ung, Matthew H.;
Varn, Frederick S.;
Lou, Shaoke;
Cheng, Chao

Publication type:

Article

Distal Spike Initiation Zone Location Estimation by Morphological Simulation of Ionic Current Filtering Demonstrated in a Novel Model of an Identified Drosophila Motoneuron.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004189

By:

Günay, Cengiz;
Sieling, Fred H.;
Dharmar, Logesh;
Lin, Wei-Hsiang;
Wolfram, Verena;
Marley, Richard;
Baines, Richard A.;
Prinz, Astrid A.

Publication type:

Article

Structure-Based Alignment and Consensus Secondary Structures for Three HIV-Related RNA Genomes.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004230

By:

Lavender, Christopher A.;
Gorelick, Robert J.;
Weeks, Kevin M.

Publication type:

Article

Modelling Circulating Tumour Cells for Personalised Survival Prediction in Metastatic Breast Cancer.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004199

By:

Ascolani, Gianluca;
Occhipinti, Annalisa;
Liò, Pietro

Publication type:

Article

Accurate Computation of Survival Statistics in Genome-Wide Studies.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004071

By:

Vandin, Fabio;
Papoutsaki, Alexandra;
Raphael, Benjamin J.;
Upfal, Eli

Publication type:

Article

Extensive Decoupling of Metabolic Genes in Cancer.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004176

By:

Reznik, Ed;
Sander, Chris

Publication type:

Article

An Exclusion Zone for Ca<sup>2+</sup> Channels around Docked Vesicles Explains Release Control by Multiple Channels at a CNS Synapse.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004253

By:

Keller, Daniel;
Babai, Norbert;
Kochubey, Olexiy;
Han, Yunyun;
Markram, Henry;
Schürmann, Felix;
Schneggenburger, Ralf

Publication type:

Article

Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004096

By:

Karr, Jonathan R.;
Williams, Alex H.;
Zucker, Jeremy D.;
Raue, Andreas;
Steiert, Bernhard;
Timmer, Jens;
Kreutz, Clemens;
null, null;
Wilkinson, Simon;
Allgood, Brandon A.;
Bot, Brian M.;
Hoff, Bruce R.;
Kellen, Michael R.;
Covert, Markus W.;
Stolovitzky, Gustavo A.;
Meyer, Pablo

Publication type:

Article