Works matching IS 1553734X AND DT 2015 AND VI 11 AND IP 4

Results: 70

Hybrid Spreading Mechanisms and T Cell Activation Shape the Dynamics of HIV-1 Infection.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004179

By:

Zhang, Changwang;
Zhou, Shi;
Groppelli, Elisabetta;
Pellegrino, Pierre;
Williams, Ian;
Borrow, Persephone;
Chain, Benjamin M.;
Jolly, Clare

Publication type:

Article

Embodied Choice: How Action Influences Perceptual Decision Making.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004110

By:

Lepora, Nathan F.;
Pezzulo, Giovanni

Publication type:

Article

Transcriptional Dynamics Reveal Critical Roles for Non-coding RNAs in the Immediate-Early Response.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004217

By:

Aitken, Stuart;
Magi, Shigeyuki;
Alhendi, Ahmad M. N.;
Itoh, Masayoshi;
Kawaji, Hideya;
Lassmann, Timo;
Daub, Carsten O.;
Arner, Erik;
Carninci, Piero;
Forrest, Alistair R. R.;
Hayashizaki, Yoshihide;
null, null;
Khachigian, Levon M.;
Okada-Hatakeyama, Mariko;
Semple, Colin A.

Publication type:

Article

Deep Sequencing of Protease Inhibitor Resistant HIV Patient Isolates Reveals Patterns of Correlated Mutations in Gag and Protease.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004249

By:

Flynn, William F.;
Chang, Max W.;
Tan, Zhiqiang;
Oliveira, Glenn;
Yuan, Jinyun;
Okulicz, Jason F.;
Torbett, Bruce E.;
Levy, Ronald M.

Publication type:

Article

ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004229

By:

Margarido, Gabriel R. A.;
Heckerman, David

Publication type:

Article

Neural Modularity Helps Organisms Evolve to Learn New Skills without Forgetting Old Skills.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004128

By:

Ellefsen, Kai Olav;
Mouret, Jean-Baptiste;
Clune, Jeff

Publication type:

Article

Non-linear Membrane Properties in Entorhinal Cortical Stellate Cells Reduce Modulation of Input-Output Responses by Voltage Fluctuations.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004188

By:

Fernandez, Fernando R.;
Malerba, Paola;
White, John A.

Publication type:

Article

Mixed Signal Learning by Spike Correlation Propagation in Feedback Inhibitory Circuits.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004227

By:

Hiratani, Naoki;
Fukai, Tomoki

Publication type:

Article

A Power-Law Dependence of Bacterial Invasion on Mammalian Host Receptors.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004203

By:

Lee, Tae J.;
Wong, Jeffrey;
Bae, Sena;
Lee, Anna Jisu;
Lopatkin, Allison;
Yuan, Fan;
You, Lingchong

Publication type:

Article

Multiplex Eukaryotic Transcription (In)activation: Timing, Bursting and Cycling of a Ratchet Clock Mechanism.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004236

By:

Rybakova, Katja N.;
Bruggeman, Frank J.;
Tomaszewska, Aleksandra;
Moné, Martijn J.;
Carlberg, Carsten;
Westerhoff, Hans V.

Publication type:

Article

Ten Simple Rules for a Community Computational Challenge.

Published in:

2015

By:

Friedberg, Iddo;
Wass, Mark N.;
Mooney, Sean D.;
Radivojac, Predrag

Publication type:

Editorial

Machine Learning Assisted Design of Highly Active Peptides for Drug Discovery.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004074

By:

Giguère, Sébastien;
Laviolette, François;
Marchand, Mario;
Tremblay, Denise;
Moineau, Sylvain;
Liang, Xinxia;
Biron, Éric;
Corbeil, Jacques

Publication type:

Article

The Serotype Distribution among Healthy Carriers before Vaccination Is Essential for Predicting the Impact of Pneumococcal Conjugate Vaccine on Invasive Disease.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004173

By:

Flasche, Stefan;
Le Polain de Waroux, Olivier;
O’Brien, Katherine L.;
Edmunds, W. John

Publication type:

Article

Neuroblastoma Tyrosine Kinase Signaling Networks Involve FYN and LYN in Endosomes and Lipid Rafts.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004130

By:

Palacios-Moreno, Juan;
Foltz, Lauren;
Guo, Ailan;
Stokes, Matthew P.;
Kuehn, Emily D.;
George, Lynn;
Comb, Michael;
Grimes, Mark L.

Publication type:

Article

Dual Dimensionality Reduction Reveals Independent Encoding of Motor Features in a Muscle Synergy for Insect Flight Control.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004168

By:

Sponberg, Simon;
Daniel, Thomas L.;
Fairhall, Adrienne L.

Publication type:

Article

Cell-Specific Cardiac Electrophysiology Models.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004242

By:

Groenendaal, Willemijn;
Ortega, Francis A.;
Kherlopian, Armen R.;
Zygmunt, Andrew C.;
Krogh-Madsen, Trine;
Christini, David J.

Publication type:

Article

Optimal Treatment Strategies in the Context of ‘Treatment for Prevention’ against HIV-1 in Resource-Poor Settings.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004200

By:

Duwal, Sulav;
Winkelmann, Stefanie;
Schütte, Christof;
von Kleist, Max

Publication type:

Article

A Bayesian Model of Category-Specific Emotional Brain Responses.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004066

By:

Wager, Tor D.;
Kang, Jian;
Johnson, Timothy D.;
Nichols, Thomas E.;
Satpute, Ajay B.;
Barrett, Lisa Feldman

Publication type:

Article

The Equivalence of Information-Theoretic and Likelihood-Based Methods for Neural Dimensionality Reduction.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004141

By:

Williamson, Ross S.;
Sahani, Maneesh;
Pillow, Jonathan W.

Publication type:

Article

Discovering Anti-platelet Drug Combinations with an Integrated Model of Activator-Inhibitor Relationships, Activator-Activator Synergies and Inhibitor-Inhibitor Synergies.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004119

By:

Lombardi, Federica;
Golla, Kalyan;
Fitzpatrick, Darren J.;
Casey, Fergal P.;
Moran, Niamh;
Shields, Denis C.

Publication type:

Article

Global Mapping of DNA Conformational Flexibility on Saccharomyces cerevisiae.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004136

By:

Menconi, Giulia;
Bedini, Andrea;
Barale, Roberto;
Sbrana, Isabella

Publication type:

Article

A DIseAse MOdule Detection (DIAMOnD) Algorithm Derived from a Systematic Analysis of Connectivity Patterns of Disease Proteins in the Human Interactome.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004120

By:

Ghiassian, Susan Dina;
Menche, Jörg;
Barabási, Albert-László

Publication type:

Article

Interaction of the Antimicrobial Peptide Polymyxin B1 with Both Membranes of E. coli: A Molecular Dynamics Study.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004180

By:

Berglund, Nils A.;
Piggot, Thomas J.;
Jefferies, Damien;
Sessions, Richard B.;
Bond, Peter J.;
Khalid, Syma

Publication type:

Article

Optimising and Communicating Options for the Control of Invasive Plant Disease When There Is Epidemiological Uncertainty.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004211

By:

Cunniffe, Nik J.;
Stutt, Richard O. J. H.;
DeSimone, R. Erik;
Gottwald, Tim R.;
Gilligan, Christopher A.

Publication type:

Article

MAGMA: Generalized Gene-Set Analysis of GWAS Data.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004219

By:

de Leeuw, Christiaan A.;
Mooij, Joris M.;
Heskes, Tom;
Posthuma, Danielle

Publication type:

Article

The Presence of Nuclear Cactus in the Early Drosophila Embryo May Extend the Dynamic Range of the Dorsal Gradient.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004159

By:

O’Connell, Michael D.;
Reeves, Gregory T.

Publication type:

Article

The Quantitative Methods Boot Camp: Teaching Quantitative Thinking and Computing Skills to Graduate Students in the Life Sciences.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004208

By:

Stefan, Melanie I.;
Gutlerner, Johanna L.;
Born, Richard T.;
Springer, Michael

Publication type:

Article

Correction: Data-Driven Prediction and Design of bZIP Coiled-Coil Interactions.

Published in:

2015

By:

null, null

Publication type:

Correction Notice

Ten Simple Rules for Reducing Overoptimistic Reporting in Methodological Computational Research.

Published in:

2015

By:

Boulesteix, Anne-Laure

Publication type:

Editorial

Automated Processing of Imaging Data through Multi-tiered Classification of Biological Structures Illustrated Using Caenorhabditis elegans.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004194

By:

Zhan, Mei;
Crane, Matthew M.;
Entchev, Eugeni V.;
Caballero, Antonio;
Fernandes de Abreu, Diana Andrea;
Ch’ng, QueeLim;
Lu, Hang

Publication type:

Article

Power Laws for Heavy-Tailed Distributions: Modeling Allele and Haplotype Diversity for the National Marrow Donor Program.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004204

By:

Slater, Noa;
Louzoun, Yoram;
Gragert, Loren;
Maiers, Martin;
Chatterjee, Ansu;
Albrecht, Mark

Publication type:

Article

Ten Simple Rules for Effective Online Outreach.

Published in:

2015

By:

Bik, Holly M.;
Dove, Alistair D. M.;
Goldstein, Miriam C.;
Helm, Rebecca R.;
MacPherson, Rick;
Martini, Kim;
Warneke, Alexandria;
McClain, Craig

Publication type:

Editorial

Twisting Right to Left: A…A Mismatch in a CAG Trinucleotide Repeat Overexpansion Provokes Left-Handed Z-DNA Conformation.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004162

By:

Khan, Noorain;
Kolimi, Narendar;
Rathinavelan, Thenmalarchelvi

Publication type:

Article

A Change in Vaccine Efficacy and Duration of Protection Explains Recent Rises in Pertussis Incidence in the United States.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004138

By:

Gambhir, Manoj;
Clark, Thomas A.;
Cauchemez, Simon;
Tartof, Sara Y.;
Swerdlow, David L.;
Ferguson, Neil M.

Publication type:

Article

Ten Simple Rules for a Successful Cross-Disciplinary Collaboration.

Published in:

2015

By:

Knapp, Bernhard;
Bardenet, Rémi;
Bernabeu, Miguel O.;
Bordas, Rafel;
Bruna, Maria;
Calderhead, Ben;
Cooper, Jonathan;
Fletcher, Alexander G.;
Groen, Derek;
Kuijper, Bram;
Lewis, Joanna;
McInerny, Greg;
Minssen, Timo;
Osborne, James;
Paulitschke, Verena;
Pitt-Francis, Joe;
Todoric, Jelena;
Yates, Christian A.;
Gavaghan, David;
Deane, Charlotte M.

Publication type:

Editorial

Quantifying Spike Train Oscillations: Biases, Distortions and Solutions.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004252

By:

Matzner, Ayala;
Bar-Gad, Izhar

Publication type:

Article

Ten Simple Rules to Win a Nobel Prize.

Published in:

2015

By:

Roberts, Richard J.

Publication type:

Editorial

Metrics for Assessing Cytoskeletal Orientational Correlations and Consistency.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004190

By:

Drew, Nancy K.;
Eagleson, Mackenzie A.;
Baldo Jr., Danny B.;
Parker, Kevin Kit;
Grosberg, Anna

Publication type:

Article

What Is the Most Realistic Single-Compartment Model of Spike Initiation?

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004114

By:

Brette, Romain

Publication type:

Article

Bud-Localization of CLB2 mRNA Can Constitute a Growth Rate Dependent Daughter Sizer.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004223

By:

Spiesser, Thomas W.;
Kühn, Clemens;
Krantz, Marcus;
Klipp, Edda

Publication type:

Article

Spatial and Functional Heterogeneities Shape Collective Behavior of Tumor-Immune Networks.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004181

By:

Wells, Daniel K.;
Chuang, Yishan;
Knapp, Louis M.;
Brockmann, Dirk;
Kath, William L.;
Leonard, Joshua N.

Publication type:

Article

Disentangling the Complexity of HGF Signaling by Combining Qualitative and Quantitative Modeling.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004192

By:

D’Alessandro, Lorenza A.;
Samaga, Regina;
Maiwald, Tim;
Rho, Seong-Hwan;
Bonefas, Sandra;
Raue, Andreas;
Iwamoto, Nao;
Kienast, Alexandra;
Waldow, Katharina;
Meyer, Rene;
Schilling, Marcel;
Timmer, Jens;
Klamt, Steffen;
Klingmüller, Ursula

Publication type:

Article

Loregic: A Method to Characterize the Cooperative Logic of Regulatory Factors.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004132

By:

Wang, Daifeng;
Yan, Koon-Kiu;
Sisu, Cristina;
Cheng, Chao;
Rozowsky, Joel;
Meyerson, William;
Gerstein, Mark B.

Publication type:

Article

Emergent Systems Energy Laws for Predicting Myosin Ensemble Processivity.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004177

By:

Egan, Paul;
Moore, Jeffrey;
Schunn, Christian;
Cagan, Jonathan;
LeDuc, Philip

Publication type:

Article

Modulation of the Disordered Conformational Ensembles of the p53 Transactivation Domain by Cancer-Associated Mutations.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004247

By:

Ganguly, Debabani;
Chen, Jianhan

Publication type:

Article

Existence and Control of Go/No-Go Decision Transition Threshold in the Striatum.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004233

By:

Bahuguna, Jyotika;
Aertsen, Ad;
Kumar, Arvind

Publication type:

Article

Segmentation and Tracking of Adherens Junctions in 3D for the Analysis of Epithelial Tissue Morphogenesis.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004124

By:

Cilla, Rodrigo;
Mechery, Vinodh;
Hernandez de Madrid, Beatriz;
Del Signore, Steven;
Dotu, Ivan;
Hatini, Victor

Publication type:

Article

Characterizing the Transmission Potential of Zoonotic Infections from Minor Outbreaks.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004154

By:

Kucharski, Adam J.;
Edmunds, W. John

Publication type:

Article

Perturbation-Expression Analysis Identifies RUNX1 as a Regulator of Human Mammary Stem Cell Differentiation.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004161

By:

Sokol, Ethan S.;
Sanduja, Sandhya;
Jin, Dexter X.;
Miller, Daniel H.;
Mathis, Robert A.;
Gupta, Piyush B.

Publication type:

Article

Machine Learning Methods Enable Predictive Modeling of Antibody Feature:Function Relationships in RV144 Vaccinees.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004185

By:

Choi, Ickwon;
Chung, Amy W.;
Suscovich, Todd J.;
Rerks-Ngarm, Supachai;
Pitisuttithum, Punnee;
Nitayaphan, Sorachai;
Kaewkungwal, Jaranit;
O'Connell, Robert J.;
Francis, Donald;
Robb, Merlin L.;
Michael, Nelson L.;
Kim, Jerome H.;
Alter, Galit;
Ackerman, Margaret E.;
Bailey-Kellogg, Chris

Publication type:

Article