Works matching IS 1553734X AND DT 2015 AND VI 11 AND IP 3

Results: 53

Correction: The Pharmacodynamics of the p53-Mdm2 Targeting Drug Nutlin: The Role of Gene-Switching Noise.

Published in:

2015

By:

null, null

Publication type:

Correction Notice

Proportionality: A Valid Alternative to Correlation for Relative Data.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004075

By:

Lovell, David;
Pawlowsky-Glahn, Vera;
Egozcue, Juan José;
Marguerat, Samuel;
Bähler, Jürg

Publication type:

Article

Highly Loaded Behavior of Kinesins Increases the Robustness of Transport Under High Resisting Loads.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003981

By:

Nam, Woochul;
Epureanu, Bogdan I.

Publication type:

Article

Microbial Forensics: Predicting Phenotypic Characteristics and Environmental Conditions from Large-Scale Gene Expression Profiles.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004127

By:

Kim, Minseung;
Zorraquino, Violeta;
Tagkopoulos, Ilias

Publication type:

Article

HPV Clearance and the Neglected Role of Stochasticity.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004113

By:

Ryser, Marc D.;
Myers, Evan R.;
Durrett, Rick

Publication type:

Article

Speeding Up Ecological and Evolutionary Computations in R; Essentials of High Performance Computing for Biologists.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004140

By:

Visser, Marco D.;
McMahon, Sean M.;
Merow, Cory;
Dixon, Philip M.;
Record, Sydne;
Jongejans, Eelke

Publication type:

Article

Angiogenic Activity of Breast Cancer Patients’ Monocytes Reverted by Combined Use of Systems Modeling and Experimental Approaches.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004050

By:

Guex, Nicolas;
Crespo, Isaac;
Bron, Sylvian;
Ifticene-Treboux, Assia;
Faes-van’t Hull, Eveline;
Kharoubi, Solange;
Liechti, Robin;
Werffeli, Patricia;
Ibberson, Mark;
Majo, Francois;
Nicolas, Michäel;
Laurent, Julien;
Garg, Abhishek;
Zaman, Khalil;
Lehr, Hans-Anton;
Stevenson, Brian J.;
Rüegg, Curzio;
Coukos, George;
Delaloye, Jean-François;
Xenarios, Ioannis

Publication type:

Article

Transcriptome Sequencing Reveals Potential Mechanism of Cryptic 3’ Splice Site Selection in SF3B1-mutated Cancers.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004105

By:

DeBoever, Christopher;
Ghia, Emanuela M.;
Shepard, Peter J.;
Rassenti, Laura;
Barrett, Christian L.;
Jepsen, Kristen;
Jamieson, Catriona H. M.;
Carson, Dennis;
Kipps, Thomas J.;
Frazer, Kelly A.

Publication type:

Article

Energy Landscape Reveals That the Budding Yeast Cell Cycle Is a Robust and Adaptive Multi-stage Process.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004156

By:

Lv, Cheng;
Li, Xiaoguang;
Li, Fangting;
Li, Tiejun

Publication type:

Article

Asymmetric Genome Organization in an RNA Virus Revealed via Graph-Theoretical Analysis of Tomographic Data.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004146

By:

Geraets, James A.;
Dykeman, Eric C.;
Stockley, Peter G.;
Ranson, Neil A.;
Twarock, Reidun

Publication type:

Article

Improved Statistical Methods Enable Greater Sensitivity in Rhythm Detection for Genome-Wide Data.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004094

By:

Hutchison, Alan L.;
Maienschein-Cline, Mark;
Chiang, Andrew H.;
Tabei, S. M. Ali;
Gudjonson, Herman;
Bahroos, Neil;
Allada, Ravi;
Dinner, Aaron R.

Publication type:

Article

The Neuroglial Potassium Cycle during Neurotransmission: Role of Kir4.1 Channels.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004137

By:

Sibille, Jérémie;
Dao Duc, Khanh;
Holcman, David;
Rouach, Nathalie

Publication type:

Article

Ligand-Target Prediction by Structural Network Biology Using nAnnoLyze.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004157

By:

Martínez-Jiménez, Francisco;
Marti-Renom, Marc A.

Publication type:

Article

Anticipation and Choice Heuristics in the Dynamic Consumption of Pain Relief.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004030

By:

Story, Giles W.;
Vlaev, Ivo;
Dayan, Peter;
Seymour, Ben;
Darzi, Ara;
Dolan, Raymond J.

Publication type:

Article

Physiology of Layer 5 Pyramidal Neurons in Mouse Primary Visual Cortex: Coincidence Detection through Bursting.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004090

By:

Shai, Adam S.;
Anastassiou, Costas A.;
Larkum, Matthew E.;
Koch, Christof

Publication type:

Article

Protein Topology Determines Cysteine Oxidation Fate: The Case of Sulfenyl Amide Formation among Protein Families.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004051

By:

Defelipe, Lucas A.;
Lanzarotti, Esteban;
Gauto, Diego;
Marti, Marcelo A.;
Turjanski, Adrián G.

Publication type:

Article

A Biologically Plausible Computational Theory for Value Integration and Action Selection in Decisions with Competing Alternatives.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004104

By:

Christopoulos, Vassilios;
Bonaiuto, James;
Andersen, Richard A.

Publication type:

Article

On the Firing Rate Dependency of the Phase Response Curve of Rat Purkinje Neurons In Vitro.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004112

By:

Couto, João;
Linaro, Daniele;
De Schutter, E;
Giugliano, Michele

Publication type:

Article

Mapping Shape to Visuomotor Mapping: Learning and Generalisation of Sensorimotor Behaviour Based on Contextual Information.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004172

By:

van Dam, Loes C. J.;
Ernst, Marc O.

Publication type:

Article

Theory of Choice in Bandit, Information Sampling and Foraging Tasks.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004164

By:

Averbeck, Bruno B.

Publication type:

Article

Identifying and Tracking Simulated Synaptic Inputs from Neuronal Firing: Insights from In Vitro Experiments.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004167

By:

Volgushev, Maxim;
Ilin, Vladimir;
Stevenson, Ian H.

Publication type:

Article

Correction: Systems Level Analysis of Systemic Sclerosis Shows a Network of Immune and Profibrotic Pathways Connected with Genetic Polymorphisms.

Published in:

2015

By:

null, null

Publication type:

Correction Notice

Spatio-temporal Model of Endogenous ROS and Raft-Dependent WNT/Beta-Catenin Signaling Driving Cell Fate Commitment in Human Neural Progenitor Cells.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004106

By:

Haack, Fiete;
Lemcke, Heiko;
Ewald, Roland;
Rharass, Tareck;
Uhrmacher, Adelinde M.

Publication type:

Article

Mining Host-Pathogen Protein Interactions to Characterize Burkholderia mallei Infectivity Mechanisms.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004088

By:

Memišević, Vesna;
Zavaljevski, Nela;
Rajagopala, Seesandra V.;
Kwon, Keehwan;
Pieper, Rembert;
DeShazer, David;
Reifman, Jaques;
Wallqvist, Anders

Publication type:

Article

Preferred Supramolecular Organization and Dimer Interfaces of Opioid Receptors from Simulated Self-Association.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004148

By:

Provasi, Davide;
Boz, Mustafa Burak;
Johnston, Jennifer M.;
Filizola, Marta

Publication type:

Article

Molecular Dynamics Simulations of the Bacterial UraA H<sup>+</sup>-Uracil Symporter in Lipid Bilayers Reveal a Closed State and a Selective Interaction with Cardiolipin.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004123

By:

Kalli, Antreas C.;
Sansom, Mark S. P.;
Reithmeier, Reinhart A. F.

Publication type:

Article

Kinetically-Defined Component Actions in Gene Repression.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004122

By:

Chow, Carson C.;
Finn, Kelsey K.;
Storchan, Geoffery B.;
Lu, Xinping;
Sheng, Xiaoyan;
Jr.Simons, S. Stoney

Publication type:

Article

PRIMAL: Fast and Accurate Pedigree-based Imputation from Sequence Data in a Founder Population.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004139

By:

Livne, Oren E.;
Han, Lide;
Alkorta-Aranburu, Gorka;
Wentworth-Sheilds, William;
Abney, Mark;
Ober, Carole;
Nicolae, Dan L.

Publication type:

Article

How Attention Can Create Synaptic Tags for the Learning of Working Memories in Sequential Tasks.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004060

By:

Rombouts, Jaldert O.;
Bohte, Sander M.;
Roelfsema, Pieter R.

Publication type:

Article

Hedging Your Bets: Intermediate Movements as Optimal Behavior in the Context of an Incomplete Decision.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004171

By:

Haith, Adrian M.;
Huberdeau, David M.;
Krakauer, John W.

Publication type:

Article

Protein Domain-Level Landscape of Cancer-Type-Specific Somatic Mutations.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004147

By:

Yang, Fan;
Petsalaki, Evangelia;
Rolland, Thomas;
Hill, David E.;
Vidal, Marc;
Roth, Frederick P.

Publication type:

Article

Spatial Heterogeneity in Drug Concentrations Can Facilitate the Emergence of Resistance to Cancer Therapy.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004142

By:

Fu, Feng;
Nowak, Martin A.;
Bonhoeffer, Sebastian

Publication type:

Article

When Can Species Abundance Data Reveal Non-neutrality?

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004134

By:

Al Hammal, Omar;
Alonso, David;
Etienne, Rampal S.;
Cornell, Stephen J.

Publication type:

Article

Delayed Response and Biosonar Perception Explain Movement Coordination in Trawling Bats.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004089

By:

Giuggioli, Luca;
McKetterick, Thomas J.;
Holderied, Marc

Publication type:

Article

Predicting Epidemic Risk from Past Temporal Contact Data.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004152

By:

Valdano, Eugenio;
Poletto, Chiara;
Giovannini, Armando;
Palma, Diana;
Savini, Lara;
Colizza, Vittoria

Publication type:

Article

Intra-Tumour Signalling Entropy Determines Clinical Outcome in Breast and Lung Cancer.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004115

By:

Banerji, Christopher R. S.;
Severini, Simone;
Caldas, Carlos;
Teschendorff, Andrew E.

Publication type:

Article

On the Number of Neurons and Time Scale of Integration Underlying the Formation of Percepts in the Brain.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004082

By:

Wohrer, Adrien;
Machens, Christian K.

Publication type:

Article

An Integrative Approach for Modeling and Simulation of Heterocyst Pattern Formation in Cyanobacteria Filaments.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004129

By:

Torres-Sánchez, Alejandro;
Gómez-Gardeñes, Jesús;
Falo, Fernando

Publication type:

Article

Detailed Contact Data and the Dissemination of Staphylococcus aureus in Hospitals.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004170

By:

Obadia, Thomas;
Silhol, Romain;
Opatowski, Lulla;
Temime, Laura;
Legrand, Judith;
Thiébaut, Anne C. M.;
Herrmann, Jean-Louis;
Fleury, Éric;
Guillemot, Didier;
Boëlle, Pierre-Yves;
null, null

Publication type:

Article

Large-Scale Chemical Similarity Networks for Target Profiling of Compounds Identified in Cell-Based Chemical Screens.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004153

By:

Lo, Yu-Chen;
Senese, Silvia;
Li, Chien-Ming;
Hu, Qiyang;
Huang, Yong;
Damoiseaux, Robert;
Torres, Jorge Z.

Publication type:

Article

Model-based Traction Force Microscopy Reveals Differential Tension in Cellular Actin Bundles.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004076

By:

Soiné, Jérôme R. D.;
Brand, Christoph A.;
Stricker, Jonathan;
Oakes, Patrick W.;
Gardel, Margaret L.;
Schwarz, Ulrich S.

Publication type:

Article

Evolution of Bow-Tie Architectures in Biology.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004055

By:

Friedlander, Tamar;
Mayo, Avraham E.;
Tlusty, Tsvi;
Alon, Uri

Publication type:

Article

Prioritizing Therapeutics for Lung Cancer: An Integrative Meta-analysis of Cancer Gene Signatures and Chemogenomic Data.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004068

By:

Fortney, Kristen;
Griesman, Joshua;
Kotlyar, Max;
Pastrello, Chiara;
Angeli, Marc;
Sound-Tsao, Ming;
Jurisica, Igor

Publication type:

Article

Improved Estimation and Interpretation of Correlations in Neural Circuits.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004083

By:

Yatsenko, Dimitri;
Josić, Krešimir;
Ecker, Alexander S.;
Froudarakis, Emmanouil;
Cotton, R. James;
Tolias, Andreas S.

Publication type:

Article

Evolution and Phenotypic Selection of Cancer Stem Cells.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004025

By:

Poleszczuk, Jan;
Hahnfeldt, Philip;
Enderling, Heiko

Publication type:

Article

Integrating Interactive Computational Modeling in Biology Curricula.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004131

By:

Helikar, Tomáš;
Cutucache, Christine E.;
Dahlquist, Lauren M.;
Herek, Tyler A.;
Larson, Joshua J.;
Rogers, Jim A.

Publication type:

Article

Evolving Nutritional Strategies in the Presence of Competition: A Geometric Agent-Based Model.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004111

By:

Senior, Alistair M.;
Charleston, Michael A.;
Lihoreau, Mathieu;
Buhl, Jerome;
Raubenheimer, David;
Simpson, Stephen J.

Publication type:

Article

3-way Networks: Application of Hypergraphs for Modelling Increased Complexity in Comparative Genomics.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004079

By:

Weighill, Deborah A;
Jacobson, Daniel A

Publication type:

Article

A Neural Mechanism for Background Information-Gated Learning Based on Axonal-Dendritic Overlaps.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004155

By:

Mainetti, Matteo;
Ascoli, Giorgio A.

Publication type:

Article

Explaining Diversity in Metagenomic Datasets by Phylogenetic-Based Feature Weighting.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004186

By:

Albanese, Davide;
De Filippo, Carlotta;
Cavalieri, Duccio;
Donati, Claudio

Publication type:

Article