Works matching IS 1553734X AND DT 2014 AND VI 10 AND IP 9

Results: 46

Multidimensional Epistasis and the Transitory Advantage of Sex.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003836

By:

Nowak, Stefan;
Neidhart, Johannes;
Szendro, Ivan G.;
Krug, Joachim

Publication type:

Article

Baseline CD4+ T Cell Counts Correlates with HIV-1 Synonymous Rate in HLA-B*5701 Subjects with Different Risk of Disease Progression.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003830

By:

Norström, Melissa M.;
Veras, Nazle M.;
Huang, Wei;
Proper, Mattia C. F.;
Cook, Jennifer;
Hartogensis, Wendy;
Hecht, Frederick M.;
Karlsoon, Annika C.;
Salemi, Marco

Publication type:

Article

Pupil-Linked Arousal Determines Variability in Perceptual Decision Making.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003854

By:

Murphy, Peter R.;
Vandekerckhove, Joachim;
Nieuwenhuis, Sander

Publication type:

Article

Evolution of the F0F1 ATP Synthase Complex in Light of the Patchy Distribution of Different Bioenergetic Pathways across Prokaryotes.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003821

By:

Koumandou, Vassiliki Lila;
Kossida, Sophia

Publication type:

Article

Multi-state Modeling of Biomolecules.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003844

By:

Stefan, Melanie I.;
Bartol, Thomas M.;
Sejnowski, Terrence J.;
Kennedy, Mary B.

Publication type:

Article

The Time Scale of Evolutionary Innovation.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003818

By:

Chatterjee, Krishnendu;
Pavlogiannis, Andreas;
Adlam, Ben;
Nowak, Martin A.

Publication type:

Article

Seasonally Dependent Relationships between Indicators of Malaria Transmission and Disease Provided by Mathematical Model Simulations.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003812

By:

Stuckey, Erin M.;
Smith, Thomas;
Chitnis, Nakul

Publication type:

Article

Examining Variable Domain Orientations in Antigen Receptors Gives Insight into TCR-Like Antibody Design.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003852

By:

Dunbar, James;
Knapp, Bernhard;
Fuchs, Angelika;
Shi, Jiye;
Deane, Charlotte M.

Publication type:

Article

Spatial Heterogeneity and Peptide Availability Determine CTL Killing Efficiency In Vivo.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003805

By:

Hogan, Thea;
Kadolsky, Ulrich;
Tung, Sim;
Seddon, Benedict;
Yates, Andrew

Publication type:

Article

IDEPI: Rapid Prediction of HIV-1 Antibody Epitopes and Other Phenotypic Features from Sequence Data Using a Flexible Machine Learning Platform.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003842

By:

Hepler, N. Lance;
Scheffler, Konrad;
Weaver, Steven;
Murrell, Ben;
Richman, Douglas D.;
Burton, Dennis R.;
Poignard, Pascal;
Smith, Davey M.;
Kosakovsky Pond, Sergei L.

Publication type:

Article

Geometry Shapes Evolution of Early Multicellularity.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003803

By:

Libby, Eric;
Ratcliff, William;
Travisano, Michael;
Kerr, Ben

Publication type:

Article

Dynamic Conformational Change Regulates the Protein-DNA Recognition: An Investigation on Binding of a Y-Family Polymerase to Its Target DNA.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003804

By:

Chu, Xiakun;
Liu, Fei;
Maxwell, Brian A.;
Wang, Yong;
Suo, Zucai;
Wang, Haijun;
Han, Wei;
Wang, Jin

Publication type:

Article

PTEN Hopping on the Cell Membrane Is Regulated via a Positively-Charged C2 Domain.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003817

By:

Yasui, Masato;
Matsuoka, Satomi;
Ueda, Masahiro

Publication type:

Article

Synchronization of Isolated Downstates (K-Complexes) May Be Caused by Cortically-Induced Disruption of Thalamic Spindling.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003855

By:

Mak-McCully, Rachel A.;
Deiss, Stephen R.;
Rosen, Burke Q.;
Jung, Ki-Young;
Sejnowski, Terrence J.;
Bastuji, Hélène;
Rey, Marc;
Cash, Sydney S.;
Bazhenov, Maxim;
Halgren, Eric

Publication type:

Article

Characterizing Protein Interactions Employing a Genome-Wide siRNA Cellular Phenotyping Screen.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003814

By:

Suratanee, Apichat;
Schaefer, Martin H.;
Betts, Matthew J.;
Soons, Zita;
Mannsperger, Heiko;
Harder, Nathalie;
Oswald, Marcus;
Gipp, Markus;
Ramminger, Ellen;
Marcus, Guillermo;
Männer, Reinhard;
Rohr, Karl;
Wanker, Erich;
Russell, Robert B.;
Andrade-Navarro, Miguel A.;
Eils, Roland;
König, Rainer

Publication type:

Article

Communication Routes in ARID Domains between Distal Residues in Helix 5 and the DNA-Binding Loops.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003744

By:

Invernizzi, Gaetano;
Tiberti, Matteo;
Lambrughi, Matteo;
Lindorff-Larsen, Kresten;
Papaleo, Elena

Publication type:

Article

Phase Transitions in the Multi-cellular Regulatory Behavior of Pancreatic Islet Excitability.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003819

By:

Hraha, Thomas H.;
Westacott, Matthew J.;
Pozzoli, Marina;
Notary, Aleena M.;
McClatchey, P. Mason;
Benninger, Richard K. P.

Publication type:

Article

Genome-Scale Metabolic Network Validation of Shewanella oneidensis Using Transposon Insertion Frequency Analysis.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003848

By:

Yang, Hong;
Krumholz, Elias W.;
Brutinel, Evan D.;
Palani, Nagendra P.;
Sadowsky, Michael J.;
Odlyzko, Andrew M.;
Gralnick, Jeffrey A.;
Libourel, Igor G. L.

Publication type:

Article

NESmapper: Accurate Prediction of Leucine-Rich Nuclear Export Signals Using Activity-Based Profiles.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003841

By:

Kosugi, Shunichi;
Yanagawa, Hiroshi;
Terauchi, Ryohei;
Tabata, Satoshi

Publication type:

Article

Ten Simple Rules for Better Figures.

Published in:

2014

By:

Rougier, Nicolas P.;
Droettboom, Michael;
Bourne, Philip E.

Publication type:

Editorial

Strategies for Controlling Non-Transmissible Infection Outbreaks Using a Large Human Movement Data Set.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003809

By:

Hancock, Penelope A.;
Rehman, Yasmin;
Hall, Ian M.;
Edeghere, Obaghe;
Danon, Leon;
House, Thomas A.;
Keeling, Matthew J.

Publication type:

Article

Clique of Functional Hubs Orchestrates Population Bursts in Developmentally Regulated Neural Networks.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003823

By:

Luccioli, Stefano;
Ben-Jacob, Eshel;
Barzilai, Ari;
Bonifazi, Paolo;
Torcini, Alessandro

Publication type:

Article

A Peptide-Based Method for 13C Metabolic Flux Analysis in Microbial Communities.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003827

By:

Ghosh, Amit;
Nilmeier, Jerome;
Weaver, Daniel;
Adams, Paul D.;
Keasling, Jay D.;
Mukhopadhyay, Aindrila;
Petzold, Christopher J.;
Martín, Héctor García

Publication type:

Article

eMatchSite: Sequence Order-Independent Structure Alignments of Ligand Binding Pockets in Protein Models.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003829

By:

Brylinski, Michal

Publication type:

Article

The Structural Basis of ATP as an Allosteric Modulator.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003831

By:

Lu, Shaoyong;
Huang, Wenkang;
Wang, Qi;
Shen, Qiancheng;
Li, Shuai;
Nussinov, Ruth;
Zhang, Jian

Publication type:

Article

Pep2Path: Automated Mass Spectrometry-Guided Genome Mining of Peptidic Natural Products.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003822

By:

Medema, Marnix H.;
Paalvast, Yared;
Nguyen, Don D.;
Melnik, Alexey;
Dorrestein, Pieter C.;
Takano, Eriko;
Breitling, Rainer

Publication type:

Article

Principal Component Analysis Characterizes Shared Pathogenetics from Genome-Wide Association Studies.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003820

By:

Chang, Diana;
Keinan, Alon

Publication type:

Article

A Bayesian Framework to Identify Methylcytosines from High-Throughput Bisulfite Sequencing Data.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003853

By:

Xie, Qing;
Liu, Qi;
Mao, Fengbiao;
Cai, Wanshi;
Wu, Honghu;
You, Mingcong;
Wang, Zhen;
Chen, Bingyu;
Sun, Zhong Sheng;
Wu, Jinyu

Publication type:

Article

Mathematical Modeling of Bacterial Kinetics to Predict the Impact of Antibiotic Colonic Exposure and Treatment Duration on the Amount of Resistant Enterobacteria Excreted.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003840

By:

Nguyen, Thu Thuy;
Guedj, Jeremie;
Chachaty, Elisabeth;
de Gunzburg, Jean;
Andremont, Antoine;
Mentré, France

Publication type:

Article

Determining Individual Variation in Growth and Its Implication for Life-History and Population Processes Using the Empirical Bayes Method.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003828

By:

Vincenzi, Simone;
Mangel, Marc;
Crivelli, Alain J.;
Munch, Stephan;
Skaug, Hans J.

Publication type:

Article

A Probabilistic Model to Predict Clinical Phenotypic Traits from Genome Sequencing.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003825

By:

Chen, Yun-Ching;
Douville, Christopher;
Wang, Cheng;
Niknafs, Noushin;
Yeo, Grace;
Beleva-Guthrie, Violeta;
Carter, Hannah;
Stenson, Peter D.;
Cooper, David N.;
Li, Biao;
Mooney, Sean;
Karchin, Rachel

Publication type:

Article

A Novel Model to Combine Clinical and Pathway-Based Transcriptomic Information for the Prognosis Prediction of Breast Cancer.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003851

By:

Huang, Sijia;
Yee, Cameron;
Ching, Travers;
Yu, Herbert;
Garmire, Lana X.

Publication type:

Article

Molecular Simulation-Based Structural Prediction of Protein Complexes in Mass Spectrometry: The Human Insulin Dimer.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003838

By:

Li, Jinyu;
Rossetti, Giulia;
Dreyer, Jens;
Raugei, Simone;
Ippoliti, Emiliano;
Lüscher, Bernhard;
Carloni, Paolo

Publication type:

Article

A Systems Approach to Predict Oncometabolites via Context-Specific Genome-Scale Metabolic Networks.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003837

By:

Nam, Hojung;
Campodonico, Miguel;
Bordbar, Aarash;
Hyduke, Daniel R.;
Kim, Sangwoo;
Zielinski, Daniel C.;
Palsson, Bernhard O.

Publication type:

Article

Revealing Molecular Mechanisms by Integrating High-Dimensional Functional Screens with Protein Interaction Data.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003801

By:

Simeone, Angela;
Marsico, Giovanni;
Collinet, Claudio;
Galvez, Thierry;
Kalaidzidis, Yannis;
Zerial, Marino;
Beyer, Andreas

Publication type:

Article

Identifying Cell Types from Spatially Referenced Single-Cell Expression Datasets.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003824

By:

Pettit, Jean-Baptiste;
Tomer, Raju;
Achim, Kaia;
Richardson, Sylvia;
Azizi, Lamiae;
Marioni, John

Publication type:

Article

SANTA: Quantifying the Functional Content of Molecular Networks.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003808

By:

Cornish, Alex J.;
Markowetz, Florian

Publication type:

Article

Inferring on the Intentions of Others by Hierarchical Bayesian Learning.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003810

By:

Diaconescu, Andreea O.;
Mathys, Christoph;
Weber, Lilian A. E.;
Daunizeau, Jean;
Kasper, Lars;
Lomakina, Ekaterina I.;
Fehr, Ernst;
Stephan, Klaas E.

Publication type:

Article

Allele-Specific Network Reveals Combinatorial Interaction That Transcends Small Effects in Psoriasis GWAS.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003766

By:

Climer, Sharlee;
Templeton, Alan R.;
Zhang, Weixiong

Publication type:

Article

Stochastic Dynamics of Interacting Haematopoietic Stem Cell Niche Lineages.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003794

By:

Székely Jr, Tamás;
Burrage, Kevin;
Mangel, Marc;
Bonsall, Michael B.

Publication type:

Article

Environmental Statistics and Optimal Regulation.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003826

By:

Sivak, David A.;
Thomson, Matt

Publication type:

Article

Torsion-Mediated Interaction between Adjacent Genes.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003785

By:

Meyer, Sam;
Beslon, Guillaume

Publication type:

Article

Data-Derived Modeling Characterizes Plasticity of MAPK Signaling in Melanoma.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003795

By:

Bernardo-Faura, Marti;
Massen, Stefan;
Falk, Christine S.;
Brady, Nathan R.;
Eils, Roland

Publication type:

Article

Quantifying the Impact and Extent of Undocumented Biomedical Synonymy.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003799

By:

Blair, David R.;
Wang, Kanix;
Nestorov, Svetlozar;
Evans, James A.;
Rzhetsky, Andrey

Publication type:

Article

Correction: Structure-Based Druggability Assessment of the Mammalian Structural Proteome with Inclusion of Light Protein Flexibility.

Published in:: 2014
Publication type:: Correction Notice

Emergence of Assortative Mixing between Clusters of Cultured Neurons.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003796

By:

Teller, Sara;
Granell, Clara;
De Domenico, Manlio;
Soriano, Jordi;
Gómez, Sergio;
Arenas, Alex

Publication type:

Article