Works matching IS 1553734X AND DT 2014 AND VI 10 AND IP 4

Results: 55

Feedback Signals in Myelodysplastic Syndromes: Increased Self-Renewal of the Malignant Clone Suppresses Normal Hematopoiesis.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003599

By:

Walenda, Thomas;
Stiehl, Thomas;
Braun, Hanna;
Fröbel, Julia;
Ho, Anthony D.;
Schroeder, Thomas;
Goecke, Tamme W.;
Rath, Björn;
Germing, Ulrich;
Marciniak-Czochra, Anna;
Wagner, Wolfgang

Publication type:

Article

Correction: Task-Based Core-Periphery Organization of Human Brain Dynamics.

Published in:: 2014
Publication type:: Correction Notice

Correction: Learning Gene Networks under SNP Perturbations Using eQTL Datasets.

Published in:: 2014
Publication type:: Correction Notice

Agent-Based Modeling of Oxygen-Responsive Transcription Factors in Escherichia coli.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003595

By:

Bai, Hao;
Rolfe, Matthew D.;
Jia, Wenjing;
Coakley, Simon;
Poole, Robert K.;
Green, Jeffrey;
Holcombe, Mike

Publication type:

Article

Ecological Consistency of SSU rRNA-Based Operational Taxonomic Units at a Global Scale.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003594

By:

Schmidt, Thomas S. B.;
Matias Rodrigues, João F.;
von Mering, Christian

Publication type:

Article

Glutamate-Bound NMDARs Arising from In Vivo-like Network Activity Extend Spatio-temporal Integration in a L5 Cortical Pyramidal Cell Model.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003590

By:

Farinella, Matteo;
Ruedt, Daniel T.;
Gleeson, Padraig;
Lanore, Frederic;
Silver, R. Angus

Publication type:

Article

Knowledge-based Fragment Binding Prediction.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003589

By:

Tang, Grace W.;
Altman, Russ B.

Publication type:

Article

Bayesian Analysis for Inference of an Emerging Epidemic: Citrus Canker in Urban Landscapes.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003587

By:

Neri, Franco M.;
Cook, Alex R.;
Gibson, Gavin J.;
Gottwald, Tim R.;
Gilligan, Christopher A.

Publication type:

Article

Computational Prediction of Alanine Scanning and Ligand Binding Energetics in G-Protein Coupled Receptors.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003585

By:

Boukharta, Lars;
Gutiérrez-de-Terán, Hugo;
Åqvist, Johan

Publication type:

Article

How the Brain Decides When to Work and When to Rest: Dissociation of Implicit-Reactive from Explicit-Predictive Computational Processes.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003584

By:

Meyniel, Florent;
Safra, Lou;
Pessiglione, Mathias

Publication type:

Article

Comparison of Filtering Methods for the Modeling and Retrospective Forecasting of Influenza Epidemics.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003583

By:

Yang, Wan;
Karspeck, Alicia;
Shaman, Jeffrey

Publication type:

Article

Wikipedia Usage Estimates Prevalence of Influenza-Like Illness in the United States in Near Real-Time.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003581

By:

McIver, David J.;
Brownstein, John S.

Publication type:

Article

Systematic Evaluation of Methods for Integration of Transcriptomic Data into Constraint-Based Models of Metabolism.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003580

By:

Machado, Daniel;
Herrgård, Markus

Publication type:

Article

Constraint-Based Modeling of Carbon Fixation and the Energetics of Electron Transfer in Geobacter metallireducens.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003575

By:

Feist, Adam M.;
Nagarajan, Harish;
Rotaru, Amelia-Elena;
Tremblay, Pier-Luc;
Zhang, Tian;
Nevin, Kelly P.;
Lovley, Derek R.;
Zengler, Karsten

Publication type:

Article

Contribution of Network Connectivity in Determining the Relationship between Gene Expression and Metabolite Concentration Changes.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003572

By:

Zelezniak, Aleksej;
Sheridan, Steven;
Patil, Kiran Raosaheb

Publication type:

Article

rDock: A Fast, Versatile and Open Source Program for Docking Ligands to Proteins and Nucleic Acids.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003571

By:

Ruiz-Carmona, Sergio;
Alvarez-Garcia, Daniel;
Foloppe, Nicolas;
Garmendia-Doval, A. Beatriz;
Juhos, Szilveszter;
Schmidtke, Peter;
Barril, Xavier;
Hubbard, Roderick E.;
Morley, S. David

Publication type:

Article

Phylodynamic Inference for Structured Epidemiological Models.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003570

By:

Rasmussen, David A.;
Volz, Erik M.;
Koelle, Katia

Publication type:

Article

A Coarse-Grained Elastic Network Atom Contact Model and Its Use in the Simulation of Protein Dynamics and the Prediction of the Effect of Mutations.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003569

By:

Frappier, Vincent;
Najmanovich, Rafael J.

Publication type:

Article

Impact of Different Oseltamivir Regimens on Treating Influenza A Virus Infection and Resistance Emergence: Insights from a Modelling Study.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003568

By:

Canini, Laetitia;
Conway, Jessica M.;
Perelson, Alan S.;
Carrat, Fabrice

Publication type:

Article

Evolutionary Game Dynamics in Populations with Heterogenous Structures.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003567

By:

Maciejewski, Wes;
Fu, Feng;
Hauert, Christoph

Publication type:

Article

ISMB 2014—The Premier Conference for the World's Computational Biologists.

Published in:

2014

By:

Fogg, Christiana N.;
Kovats, Diane E.

Publication type:

Proceeding

Chemical, Target, and Bioactive Properties of Allosteric Modulation.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003559

By:

van Westen, Gerard J. P.;
Gaulton, Anna;
Overington, John P.

Publication type:

Article

Timing of Neuropeptide Coupling Determines Synchrony and Entrainment in the Mammalian Circadian Clock.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003565

By:

Ananthasubramaniam, Bharath;
Herzog, Erik D.;
Herzel, Hanspeter

Publication type:

Article

Atomistic Picture for the Folding Pathway of a Hybrid-1 Type Human Telomeric DNA G-quadruplex.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003562

By:

Bian, Yunqiang;
Tan, Cheng;
Wang, Jun;
Sheng, Yuebiao;
Zhang, Jian;
Wang, Wei

Publication type:

Article

The Spatial Resolution of Epidemic Peaks.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003561

By:

Mills, Harriet L.;
Riley, Steven

Publication type:

Article

Spike-Threshold Adaptation Predicted by Membrane Potential Dynamics In Vivo.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003560

By:

Fontaine, Bertrand;
Peña, José Luis;
Brette, Romain

Publication type:

Article

Active Learning to Understand Infectious Disease Models and Improve Policy Making.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003563

By:

Willem, Lander;
Stijven, Sean;
Vladislavleva, Ekaterina;
Broeckhove, Jan;
Beutels, Philippe;
Hens, Niel

Publication type:

Article

Continuous Attractor Network Model for Conjunctive Position-by-Velocity Tuning of Grid Cells.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003558

By:

Si, Bailu;
Romani, Sandro;
Tsodyks, Misha

Publication type:

Article

Influence of Wiring Cost on the Large-Scale Architecture of Human Cortical Connectivity.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003557

By:

Samu, David;
Seth, Anil K.;
Nowotny, Thomas

Publication type:

Article

Sensing Membrane Stresses by Protein Insertions.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003556

By:

Campelo, Felix;
Kozlov, Michael M.

Publication type:

Article

Enhanced Methods for Local Ancestry Assignment in Sequenced Admixed Individuals.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003555

By:

Brown, Robert;
Pasaniuc, Bogdan

Publication type:

Article

A Toolbox for Representational Similarity Analysis.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003553

By:

Nili, Hamed;
Wingfield, Cai;
Walther, Alexander;
Su, Li;
Marslen-Wilson, William;
Kriegeskorte, Nikolaus

Publication type:

Article

Coupling of Lever Arm Swing and Biased Brownian Motion in Actomyosin.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003552

By:

Nie, Qing-Miao;
Togashi, Akio;
Sasaki, Takeshi N.;
Takano, Mitsunori;
Sasai, Masaki;
Terada, Tomoki P.

Publication type:

Article

The Evolution of Multivariate Maternal Effects.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003550

By:

Kuijper, Bram;
Johnstone, Rufus A.;
Townley, Stuart

Publication type:

Article

Mechanisms of Zero-Lag Synchronization in Cortical Motifs.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003548

By:

Gollo, Leonardo L.;
Mirasso, Claudio;
Sporns, Olaf;
Breakspear, Michael

Publication type:

Article

A Synergism between Adaptive Effects and Evolvability Drives Whole Genome Duplication to Fixation.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003547

By:

Cuypers, Thomas D.;
Hogeweg, Paulien

Publication type:

Article

Multiple Model-Informed Open-Loop Control of Uncertain Intracellular Signaling Dynamics.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003546

By:

Perley, Jeffrey P.;
Mikolajczak, Judith;
Harrison, Marietta L.;
Buzzard, Gregery T.;
Rundell, Ann E.

Publication type:

Article

Prediction and Prioritization of Rare Oncogenic Mutations in the Cancer Kinome Using Novel Features and Multiple Classifiers.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003545

By:

U, ManChon;
Talevich, Eric;
Katiyar, Samiksha;
Rasheed, Khaled;
Kannan, Natarajan

Publication type:

Article

Exact Hybrid Particle/Population Simulation of Rule-Based Models of Biochemical Systems.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003544

By:

Hogg, Justin S.;
Harris, Leonard A.;
Stover, Lori J.;
Nair, Niketh S.;
Faeder, James R.

Publication type:

Article

Ten Simple Rules for the Care and Feeding of Scientific Data.

Published in:

2014

By:

Goodman, Alyssa;
Pepe, Alberto;
Blocker, Alexander W.;
Borgman, Christine L.;
Cranmer, Kyle;
Crosas, Merce;
Di Stefano, Rosanne;
Gil, Yolanda;
Groth, Paul;
Hedstrom, Margaret;
Hogg, David W.;
Kashyap, Vinay;
Mahabal, Ashish;
Siemiginowska, Aneta;
Slavkovic, Aleksandra

Publication type:

Editorial

Leadership in Moving Human Groups.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003541

By:

Boos, Margarete;
Pritz, Johannes;
Lange, Simon;
Belz, Michael

Publication type:

Article

Fast Protein Loop Sampling and Structure Prediction Using Distance-Guided Sequential Chain-Growth Monte Carlo Method.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003539

By:

Tang, Ke;
Zhang, Jinfeng;
Liang, Jie

Publication type:

Article

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003537

By:

Bouckaert, Remco;
Heled, Joseph;
Kühnert, Denise;
Vaughan, Tim;
Wu, Chieh-Hsi;
Xie, Dong;
Suchard, Marc A.;
Rambaut, Andrew;
Drummond, Alexei J.

Publication type:

Article

Phylogenetic Quantification of Intra-tumour Heterogeneity.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003535

By:

Schwarz, Roland F.;
Trinh, Anne;
Sipos, Botond;
Brenton, James D.;
Goldman, Nick;
Markowetz, Florian

Publication type:

Article

Rates of CTL Killing in Persistent Viral Infection In Vivo.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003534

By:

Elemans, Marjet;
Florins, Arnaud;
Willems, Luc;
Asquith, Becca

Publication type:

Article

Biophysical Properties of Intrinsically Disordered p130Cas Substrate Domain — Implication in Mechanosensing.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003532

By:

Hotta, Kinya;
Ranganathan, Soumya;
Liu, Ruchuan;
Wu, Fei;
Machiyama, Hiroaki;
Gao, Rong;
Hirata, Hiroaki;
Soni, Neelesh;
Ohe, Takashi;
Hogue, Christopher W. V.;
Madhusudhan, M. S.;
Sawada, Yasuhiro

Publication type:

Article

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003531

By:

McMurdie, Paul J.;
Holmes, Susan

Publication type:

Article

Optimal Schedules of Light Exposure for Rapidly Correcting Circadian Misalignment.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003523

By:

Serkh, Kirill;
Forger, Daniel B.

Publication type:

Article

Exploring the Conformational Transitions of Biomolecular Systems Using a Simple Two-State Anisotropic Network Model.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003521

By:

Das, Avisek;
Gur, Mert;
Cheng, Mary Hongying;
Jo, Sunhwan;
Bahar, Ivet;
Roux, Benoît

Publication type:

Article

Computational Biology and Bioinformatics in Nigeria.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003516

By:

Fatumo, Segun A.;
Adoga, Moses P.;
Ojo, Opeolu O.;
Oluwagbemi, Olugbenga;
Adeoye, Tolulope;
Ewejobi, Itunuoluwa;
Adebiyi, Marion;
Adebiyi, Ezekiel;
Bewaji, Clement;
Nashiru, Oyekanmi

Publication type:

Article