Works matching IS 1553734X AND DT 2014 AND VI 10 AND IP 3

Results: 46

Correction: A Combination of Transcriptional and MicroRNA Regulation Improves the Stability of the Relative Concentrations of Target Genes.

Published in:: 2014
Publication type:: Correction Notice

Within-Host Bacterial Diversity Hinders Accurate Reconstruction of Transmission Networks from Genomic Distance Data.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003549

By:

Worby, Colin J.;
Lipsitch, Marc;
Hanage, William P.

Publication type:

Article

Comprehensive Analyses of Ventricular Myocyte Models Identify Targets Exhibiting Favorable Rate Dependence.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003543

By:

Cummins, Megan A.;
Dalal, Pavan J.;
Bugana, Marco;
Severi, Stefano;
Sobie, Eric A.

Publication type:

Article

Correction of Distortion in Flattened Representations of the Cortical Surface Allows Prediction of V1-V3 Functional Organization from Anatomy.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003538

By:

Benson, Noah C.;
Butt, Omar H.;
Brainard, David H.;
Aguirre, Geoffrey K.

Publication type:

Article

Loads Bias Genetic and Signaling Switches in Synthetic and Natural Systems.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003533

By:

Lyons, Samanthe M.;
Xu, Wenlong;
Medford, June;
Prasad, Ashok

Publication type:

Article

Relating Structure and Function in the Human Brain: Relative Contributions of Anatomy, Stationary Dynamics, and Non-stationarities.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003530

By:

Messé, Arnaud;
Rudrauf, David;
Benali, Habib;
Marrelec, Guillaume

Publication type:

Article

Identification of New IκBα Complexes by an Iterative Experimental and Mathematical Modeling Approach.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003528

By:

Konrath, Fabian;
Witt, Johannes;
Sauter, Thomas;
Kulms, Dagmar

Publication type:

Article

Comparative Analysis of the Macroscale Structural Connectivity in the Macaque and Human Brain.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003529

By:

Goulas, Alexandros;
Bastiani, Matteo;
Bezgin, Gleb;
Uylings, Harry B. M.;
Roebroeck, Alard;
Stiers, Peter

Publication type:

Article

A Discrete Model of Drosophila Eggshell Patterning Reveals Cell-Autonomous and Juxtacrine Effects.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003527

By:

Fauré, Adrien;
Vreede, Barbara M. I.;
Sucena, Élio;
Chaouiya, Claudine

Publication type:

Article

Neuronal Spike Timing Adaptation Described with a Fractional Leaky Integrate-and-Fire Model.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003526

By:

Teka, Wondimu;
Marinov, Toma M.;
Santamaria, Fidel

Publication type:

Article

Global Quantitative Modeling of Chromatin Factor Interactions.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003525

By:

Zhou, Jian;
Troyanskaya, Olga G.

Publication type:

Article

Computational Analyses of Synergism in Small Molecular Network Motifs.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003524

By:

Zhang, Yili;
Smolen, Paul;
Baxter, Douglas A.;
Byrne, John H.

Publication type:

Article

Crossing Borders for Science.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003519

By:

Schultheiss, Sebastian J.;
Yang, Joshua SungWoo;
Iwasaki, Wataru;
Lin, Shu-Hsi;
Jean, Angela;
Michaut, Magali

Publication type:

Article

Environmental and State-Level Regulatory Factors Affect the Incidence of Autism and Intellectual Disability.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003518

By:

Rzhetsky, Andrey;
Bagley, Steven C.;
Wang, Kanix;
Lyttle, Christopher S.;
Cook Jr, Edwin H.;
Altman, Russ B.;
Gibbons, Robert D.

Publication type:

Article

Long Non-Coding RNA and Alternative Splicing Modulations in Parkinson's Leukocytes Identified by RNA Sequencing.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003517

By:

Soreq, Lilach;
Guffanti, Alessandro;
Salomonis, Nathan;
Simchovitz, Alon;
Israel, Zvi;
Bergman, Hagai;
Soreq, Hermona

Publication type:

Article

Viral Quasispecies Assembly via Maximal Clique Enumeration.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003515

By:

Töpfer, Armin;
Marschall, Tobias;
Bull, Rowena A.;
Luciani, Fabio;
Schönhuth, Alexander;
Beerenwinkel, Niko

Publication type:

Article

Probabilistic Approach to Predicting Substrate Specificity of Methyltransferases.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003514

By:

Szczepińska, Teresa;
Kutner, Jan;
Kopczyński, Michał;
Pawłowski, Krzysztof;
Dziembowski, Andrzej;
Kudlicki, Andrzej;
Ginalski, Krzysztof;
Rowicka, Maga

Publication type:

Article

Spatiotemporal Computations of an Excitable and Plastic Brain: Neuronal Plasticity Leads to Noise-Robust and Noise-Constructive Computations.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003512

By:

Toutounji, Hazem;
Pipa, Gordon

Publication type:

Article

STDP Installs in Winner-Take-All Circuits an Online Approximation to Hidden Markov Model Learning.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003511

By:

Kappel, David;
Nessler, Bernhard;
Maass, Wolfgang

Publication type:

Article

An In-Silico Model of Lipoprotein Metabolism and Kinetics for the Evaluation of Targets and Biomarkers in the Reverse Cholesterol Transport Pathway.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003509

By:

Lu, James;
Hübner, Katrin;
Nanjee, M. Nazeem;
Brinton, Eliot A.;
Mazer, Norman A.

Publication type:

Article

Dynamic Alignment Models for Neural Coding.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003508

By:

Kollmorgen, Sepp;
Hahnloser, Richard H. R.

Publication type:

Article

Investigation of Inflammation and Tissue Patterning in the Gut Using a Spatially Explicit General-Purpose Model of Enteric Tissue (SEGMEnT).

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003507

By:

Cockrell, Chase;
Christley, Scott;
An, Gary

Publication type:

Article

Ten Simple Rules for Effective Computational Research.

Published in:

2014

By:

Osborne, James M.;
Bernabeu, Miguel O.;
Bruna, Maria;
Calderhead, Ben;
Cooper, Jonathan;
Dalchau, Neil;
Dunn, Sara-Jane;
Fletcher, Alexander G.;
Freeman, Robin;
Groen, Derek;
Knapp, Bernhard;
McInerny, Greg J.;
Mirams, Gary R.;
Pitt-Francis, Joe;
Sengupta, Biswa;
Wright, David W.;
Yates, Christian A.;
Gavaghan, David J.;
Emmott, Stephen;
Deane, Charlotte

Publication type:

Editorial

Quantitative Protein Localization Signatures Reveal an Association between Spatial and Functional Divergences of Proteins.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003504

By:

Loo, Lit-Hsin;
Laksameethanasan, Danai;
Tung, Yi-Ling

Publication type:

Article

Modeling Mutual Exclusivity of Cancer Mutations.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003503

By:

Szczurek, Ewa;
Beerenwinkel, Niko

Publication type:

Article

HapTree: A Novel Bayesian Framework for Single Individual Polyplotyping Using NGS Data.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003502

By:

Berger, Emily;
Yorukoglu, Deniz;
Peng, Jian;
Berger, Bonnie

Publication type:

Article

An Integrated Model of Multiple-Condition ChIP-Seq Data Reveals Predeterminants of Cdx2 Binding.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003501

By:

Mahony, Shaun;
Edwards, Matthew D.;
Mazzoni, Esteban O.;
Sherwood, Richard I.;
Kakumanu, Akshay;
Morrison, Carolyn A.;
Wichterle, Hynek;
Gifford, David K.

Publication type:

Article

MRFalign: Protein Homology Detection through Alignment of Markov Random Fields.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003500

By:

Ma, Jianzhu;
Wang, Sheng;
Wang, Zhiyong;
Xu, Jinbo

Publication type:

Article

Spatio-Temporal Simulation of First Pass Drug Perfusion in the Liver.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003499

By:

Schwen, Lars Ole;
Krauss, Markus;
Niederalt, Christoph;
Gremse, Felix;
Kiessling, Fabian;
Schenk, Andrea;
Preusser, Tobias;
Kuepfer, Lars

Publication type:

Article

Model-Based Analysis for Qualitative Data: An Application in Drosophila Germline Stem Cell Regulation.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003498

By:

Pargett, Michael;
Rundell, Ann E.;
Buzzard, Gregery T.;
Umulis, David M.

Publication type:

Article

Bioinformatics Curriculum Guidelines: Toward a Definition of Core Competencies.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003496

By:

Welch, Lonnie;
Lewitter, Fran;
Schwartz, Russell;
Brooksbank, Cath;
Radivojac, Predrag;
Gaeta, Bruno;
Schneider, Maria Victoria

Publication type:

Article

Bidirectional Control of Absence Seizures by the Basal Ganglia: A Computational Evidence.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003495

By:

Chen, Mingming;
Guo, Daqing;
Wang, Tiebin;
Jing, Wei;
Xia, Yang;
Xu, Peng;
Luo, Cheng;
Valdes-Sosa, Pedro A.;
Yao, Dezhong

Publication type:

Article

Universal Count Correction for High-Throughput Sequencing.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003494

By:

Hashimoto, Tatsunori B.;
Edwards, Matthew D.;
Gifford, David K.

Publication type:

Article

Resolving Structural Variability in Network Models and the Brain.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003491

By:

Klimm, Florian;
Bassett, Danielle S.;
Carlson, Jean M.;
Mucha, Peter J.

Publication type:

Article

Assembly of Nsp1 Nucleoporins Provides Insight into Nuclear Pore Complex Gating.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003488

By:

Gamini, Ramya;
Han, Wei;
Stone, John E.;
Schulten, Klaus

Publication type:

Article

Modular Composition of Gene Transcription Networks.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003486

By:

Gyorgy, Andras;
Del Vecchio, Domitilla

Publication type:

Article

Structural Insights into E. coli Porphobilinogen Deaminase during Synthesis and Exit of 1-Hydroxymethylbilane.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003484

By:

Bung, Navneet;
Pradhan, Meenakshi;
Srinivasan, Harini;
Bulusu, Gopalakrishnan

Publication type:

Article

Effect of Dedifferentiation on Time to Mutation Acquisition in Stem Cell-Driven Cancers.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003481

By:

Jilkine, Alexandra;
Gutenkunst, Ryan N.

Publication type:

Article

Behavioral Lateralization and Optimal Route Choice in Flying Budgerigars.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003473

By:

Bhagavatula, Partha S.;
Claudianos, Charles;
Ibbotson, Michael R.;
Srinivasan, Mandyam V.

Publication type:

Article

Integrative Computational and Experimental Approaches to Establish a Post-Myocardial Infarction Knowledge Map.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003472

By:

Nguyen, Nguyen T.;
Zhang, Xiaolin;
Wu, Cathy;
Lange, Richard A.;
Chilton, Robert J.;
Lindsey, Merry L.;
Jin, Yu-Fang

Publication type:

Article

Slowness and Sparseness Have Diverging Effects on Complex Cell Learning.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003468

By:

Lies, Jörn-Philipp;
Häfner, Ralf M.;
Bethge, Matthias

Publication type:

Article

Quantitative Modeling of a Gene's Expression from Its Intergenic Sequence.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003467

By:

Samee, Md. Abul Hassan;
Sinha, Saurabh

Publication type:

Article

If You Can't Measure It, You Can't Manage It.

Published in:

2014

By:

Peccoud, Jean

Publication type:

Opinion

The Rise and Fall of HIV in High-Prevalence Countries: A Challenge for Mathematical Modeling.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003459

By:

Nagelkerke, Nico J. D.;
Arora, Paul;
Jha, Prabhat;
Williams, Brian;
McKinnon, Lyle;
de Vlas, Sake J.

Publication type:

Article

Epigenetics Decouples Mutational from Environmental Robustness. Did It Also Facilitate Multicellularity?

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003450

By:

Gombar, Saurabh;
MacCarthy, Thomas;
Bergman, Aviv

Publication type:

Article

Direct Solution of the Chemical Master Equation Using Quantized Tensor Trains.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003359

By:

Kazeev, Vladimir;
Khammash, Mustafa;
Nip, Michael;
Schwab, Christoph

Publication type:

Article