Works matching IS 1553734X AND DT 2013 AND VI 9 AND IP 8

Results: 40

Causes and Consequences of Hyperexcitation in Central Clock Neurons.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003196

By:

Diekman, Casey O.;
Belle, Mino D. C.;
Irwin, Robert P.;
Allen, Charles N.;
Piggins, Hugh D.;
Forger, Daniel B.

Publication type:

Article

How MicroRNA and Transcription Factor Co-regulatory Networks Affect Osteosarcoma Cell Proliferation.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003210

By:

Poos, Kathrin;
Smida, Jan;
Nathrath, Michaela;
Maugg, Doris;
Baumhoer, Daniel;
Korsching, Eberhard

Publication type:

Article

Effective Harmonic Potentials: Insights into the Internal Cooperativity and Sequence-Specificity of Protein Dynamics.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003209

By:

Dehouck, Yves;
Mikhailov, Alexander S.

Publication type:

Article

International Society for Computational Biology Welcomes Its Newest Class of Fellows.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003199

By:

Fogg, Christiana N.;
Kovats, Diane E.

Publication type:

Article

Transcriptional Regulation of Lineage Commitment - A Stochastic Model of Cell Fate Decisions.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003197

By:

Teles, Jose;
Pina, Cristina;
Edén, Patrik;
Ohlsson, Mattias;
Enver, Tariq;
Peterson, Carsten

Publication type:

Article

Structural Similarities and Differences between Amyloidogenic and Non-Amyloidogenic Islet Amyloid Polypeptide (IAPP) Sequences and Implications for the Dual Physiological and Pathological Activities of These Peptides.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003211

By:

Wu, Chun;
Shea, Joan-Emma

Publication type:

Article

Network and Atomistic Simulations Unveil the Structural Determinants of Mutations Linked to Retinal Diseases.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003207

By:

Mariani, Simona;
Dell'Orco, Daniele;
Felline, Angelo;
Raimondi, Francesco;
Fanelli, Francesca

Publication type:

Article

Gause's Principle and the Effect of Resource Partitioning on the Dynamical Coexistence of Replicating Templates.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003193

By:

Szilágyi, András;
Zachar, István;
Szathmáry, Eörs

Publication type:

Article

Flux Imbalance Analysis and the Sensitivity of Cellular Growth to Changes in Metabolite Pools.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003195

By:

Reznik, Ed;
Mehta, Pankaj;
Segrè, Daniel

Publication type:

Article

The Individualized Genetic Barrier Predicts Treatment Response in a Large Cohort of HIV-1 Infected Patients.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003203

By:

Beerenwinkel, Niko;
Montazeri, Hesam;
Schuhmacher, Heike;
Knupfer, Patrick;
von Wyl, Viktor;
Furrer, Hansjakob;
Battegay, Manuel;
Hirschel, Bernard;
Cavassini, Matthias;
Vernazza, Pietro;
Bernasconi, Enos;
Yerly, Sabine;
Böni, Jürg;
Klimkait, Thomas;
Cellerai, Cristina;
Günthard, Huldrych F.

Publication type:

Article

Determinants of Beat-to-Beat Variability of Repolarization Duration in the Canine Ventricular Myocyte: A Computational Analysis.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003202

By:

Heijman, Jordi;
Zaza, Antonio;
Johnson, Daniel M.;
Rudy, Yoram;
Peeters, Ralf L. M.;
Volders, Paul G. A.;
Westra, Ronald L.

Publication type:

Article

Model-Based Analysis of HER Activation in Cells Co-Expressing EGFR, HER2 and HER3.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003201

By:

Shankaran, Harish;
Zhang, Yi;
Tan, Yunbing;
Resat, Haluk

Publication type:

Article

Predicting Disease Risk Using Bootstrap Ranking and Classification Algorithms.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003200

By:

Manor, Ohad;
Segal, Eran

Publication type:

Article

A Self-Directed Method for Cell-Type Identification and Separation of Gene Expression Microarrays.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003189

By:

Zuckerman, Neta S.;
Noam, Yair;
Goldsmith, Andrea J.;
Lee, Peter P.

Publication type:

Article

Visual Nonclassical Receptive Field Effects Emerge from Sparse Coding in a Dynamical System.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003191

By:

Zhu, Mengchen;
Rozell, Christopher J.

Publication type:

Article

A General Model for Toxin-Antitoxin Module Dynamics Can Explain Persister Cell Formation in E. coli.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003190

By:

Gelens, Lendert;
Hill, Lydia;
Vandervelde, Alexandra;
Danckaert, Jan;
Loris, Remy

Publication type:

Article

Stochasticity, Bistability and the Wisdom of Crowds: A Model for Associative Learning in Genetic Regulatory Networks.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003179

By:

Sorek, Matan;
Balaban, Nathalie Q.;
Loewenstein, Yonatan

Publication type:

Article

Top-Down Beta Rhythms Support Selective Attention via Interlaminar Interaction: A Model.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003164

By:

Lee, Jung H.;
Whittington, Miles A.;
Kopell, Nancy J.

Publication type:

Article

On the Importance of Polar Interactions for Complexes Containing Intrinsically Disordered Proteins.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003192

By:

Wong, Eric T. C.;
Na, Dokyun;
Gsponer, Jörg

Publication type:

Article

Endogenous Cholinergic Inputs and Local Circuit Mechanisms Govern the Phasic Mesolimbic Dopamine Response to Nicotine.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003183

By:

Graupner, Michael;
Maex, Reinoud;
Gutkin, Boris

Publication type:

Article

Sparse Coding Models Can Exhibit Decreasing Sparseness while Learning Sparse Codes for Natural Images.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003182

By:

Zylberberg, Joel;
DeWeese, Michael Robert

Publication type:

Article

Nucleosome Free Regions in Yeast Promoters Result from Competitive Binding of Transcription Factors That Interact with Chromatin Modifiers.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003181

By:

Ozonov, Evgeniy A.;
van Nimwegen, Erik

Publication type:

Article

Spike Triggered Hormone Secretion in Vasopressin Cells; a Model Investigation of Mechanism and Heterogeneous Population Function.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003187

By:

MacGregor, Duncan J.;
Leng, Gareth

Publication type:

Article

Biochemical Competition Makes Fatty-Acid β-Oxidation Vulnerable to Substrate Overload.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003186

By:

van Eunen, Karen;
Simons, Sereh M. J.;
Gerding, Albert;
Bleeker, Aycha;
den Besten, Gijs;
Touw, Catharina M. L.;
Houten, Sander M.;
Groen, Bert K.;
Krab, Klaas;
Reijngoud, Dirk-Jan;
Bakker, Barbara M.

Publication type:

Article

Sensory Information and Encounter Rates of Interacting Species.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003178

By:

Hein, Andrew M.;
McKinley, Scott A.

Publication type:

Article

From Principal Component to Direct Coupling Analysis of Coevolution in Proteins: Low-Eigenvalue Modes are Needed for Structure Prediction.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003176

By:

Cocco, Simona;
Monasson, Remi;
Weigt, Martin

Publication type:

Article

Host Mobility Drives Pathogen Competition in Spatially Structured Populations.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003169

By:

Poletto, Chiara;
Meloni, Sandro;
Colizza, Vittoria;
Moreno, Yamir;
Vespignani, Alessandro

Publication type:

Article

Shape Similarity, Better than Semantic Membership, Accounts for the Structure of Visual Object Representations in a Population of Monkey Inferotemporal Neurons.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003167

By:

Baldassi, Carlo;
Alemi-Neissi, Alireza;
Pagan, Marino;
DiCarlo, James J.;
Zecchina, Riccardo;
Zoccolan, Davide

Publication type:

Article

Quantifying Cell Fate Decisions for Differentiation and Reprogramming of a Human Stem Cell Network: Landscape and Biological Paths.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003165

By:

Li, Chunhe;
Wang, Jin

Publication type:

Article

Priors Engaged in Long-Latency Responses to Mechanical Perturbations Suggest a Rapid Update in State Estimation.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003177

By:

Crevecoeur, Frédéric;
Scott, Stephen H.

Publication type:

Article

Ultrasensitivity in Phosphorylation-Dephosphorylation Cycles with Little Substrate.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003175

By:

Martins, Bruno M. C.;
Swain, Peter S.

Publication type:

Article

Parameter Trajectory Analysis to Identify Treatment Effects of Pharmacological Interventions.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003166

By:

Tiemann, Christian A.;
Vanlier, Joep;
Oosterveer, Maaike H.;
Groen, Albert K.;
Hilbers, Peter A. J.;
van Riel, Natal A. W.

Publication type:

Article

Conditional Cooperativity of Toxin - Antitoxin Regulation Can Mediate Bistability between Growth and Dormancy.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003174

By:

Cataudella, Ilaria;
Sneppen, Kim;
Gerdes, Kenn;
Mitarai, Namiko

Publication type:

Article

Simulating Cortical Development as a Self Constructing Process: A Novel Multi-Scale Approach Combining Molecular and Physical Aspects.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003173

By:

Zubler, Frederic;
Hauri, Andreas;
Pfister, Sabina;
Bauer, Roman;
Anderson, John C.;
Whatley, Adrian M.;
Douglas, Rodney J.

Publication type:

Article

Full Design Automation of Multi-State RNA Devices to Program Gene Expression Using Energy-Based Optimization.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003172

By:

Rodrigo, Guillermo;
Landrain, Thomas E.;
Majer, Eszter;
Daròs, José-Antonio;
Jaramillo, Alfonso

Publication type:

Article

Characteristic Effects of Stochastic Oscillatory Forcing on Neural Firing: Analytical Theory and Comparison to Paddlefish Electroreceptor Data.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003170

By:

Bauermeister, Christoph;
Schwalger, Tilo;
Russell, David F.;
Neiman, Alexander B.;
Lindner, Benjamin

Publication type:

Article

Evolutionary Tradeoffs between Economy and Effectiveness in Biological Homeostasis Systems.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003163

By:

Szekely, Pablo;
Sheftel, Hila;
Mayo, Avi;
Alon, Uri

Publication type:

Article

Viral Proteins Originated De Novo by Overprinting Can Be Identified by Codon Usage: Application to the “Gene Nursery” of Deltaretroviruses.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003162

By:

Pavesi, Angelo;
Magiorkinis, Gkikas;
Karlin, David G.

Publication type:

Article

Binding Polymorphism in the DNA Bound State of the Pdx1 Homeodomain.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003160

By:

Babin, Volodymyr;
Wang, Dongli;
Rose, Robert B.;
Sagui, Celeste

Publication type:

Article

Software for Computing and Annotating Genomic Ranges.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003118

By:

Lawrence, Michael;
Huber, Wolfgang;
Pagès, Hervé;
Aboyoun, Patrick;
Carlson, Marc;
Gentleman, Robert;
Morgan, Martin T.;
Carey, Vincent J.

Publication type:

Article