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Airway basal cells show regionally distinct potential to undergo metaplastic differentiation.
- Published in:
- eLife, 2022, p. 1, doi. 10.7554/eLife.80083
- By:
- Publication type:
- Article
Correction: Inferring Protein Modulation from Gene Expression Data Using Conditional Mutual Information.
- Published in:
- 2016
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- Publication type:
- Correction Notice
Direct ChIP-Seq significance analysis improves target prediction.
- Published in:
- BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/1471-2164-16-S5-S4
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- Publication type:
- Article
Entinostat in patients with relapsed or refractory abdominal neuroendocrine tumors.
- Published in:
- Oncologist, 2024, v. 29, n. 9, p. 817, doi. 10.1093/oncolo/oyae118
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- Publication type:
- Article
The transcriptomic response of cells to a drug combination is more than the sum of the responses to the monotherapies.
- Published in:
- eLife, 2020, p. 1, doi. 10.7554/eLife.52707
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- Publication type:
- Article
Convection-enhanced delivery of etoposide is effective against murine proneural glioblastoma.
- Published in:
- Neuro-Oncology, 2014, v. 16, n. 9, p. 1210, doi. 10.1093/neuonc/nou026
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- Publication type:
- Article
The number of titrated microRNA species dictates ceRNA regulation.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. 9, p. 4354, doi. 10.1093/nar/gky286
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- Publication type:
- Article
A case study of an integrative genomic and experimental therapeutic approach for rare tumors: identification of vulnerabilities in a pediatric poorly differentiated carcinoma.
- Published in:
- Genome Medicine, 2016, v. 8, p. 1, doi. 10.1186/s13073-016-0366-0
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- Publication type:
- Article
Erratum to: HDAC6 activity is a non-oncogene addiction hub for inflammatory breast cancers.
- Published in:
- 2017
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- Publication type:
- journal article
Accelerated parallel algorithm for gene network reverse engineering.
- Published in:
- BMC Systems Biology, 2017, v. 11, p. 85, doi. 10.1186/s12918-017-0458-5
- By:
- Publication type:
- Article
Drawing networks of rejection - a systems biological approach to the identification of candidate genes in heart transplantation.
- Published in:
- Journal of Cellular & Molecular Medicine, 2011, v. 15, n. 4, p. 949, doi. 10.1111/j.1582-4934.2010.01092.x
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- Publication type:
- Article
NaRnEA: An Information Theoretic Framework for Gene Set Analysis.
- Published in:
- Entropy, 2023, v. 25, n. 3, p. 542, doi. 10.3390/e25030542
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- Publication type:
- Article
Pharmacogenetics: Ethical Issues and Policy Options.
- Published in:
- Kennedy Institute of Ethics Journal, 2002, v. 12, n. 1, p. 1, doi. 10.1353/ken.2002.0001
- By:
- Publication type:
- Article
329 Longitudinal immune profiling reveals unique myeloid and T cell phenotypes associated with spontaneous immunoediting in a novel prostate tumor model.
- Published in:
- 2022
- By:
- Publication type:
- Abstract
Using systems and structure biology tools to dissect cellular phenotypes.
- Published in:
- Journal of the American Medical Informatics Association, 2012, v. 19, n. 2, p. 171, doi. 10.1136/amiajnl-2011-000490
- By:
- Publication type:
- Article
Identification of neurodegenerative factors using translatome-regulatory network analysis.
- Published in:
- Nature Neuroscience, 2015, v. 18, n. 9, p. 1325, doi. 10.1038/nn.4070
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- Publication type:
- Article
Identifying candidate drivers of alcohol dependence-induced excessive drinking by assembly and interrogation of brain-specific regulatory networks.
- Published in:
- Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0593-5
- By:
- Publication type:
- Article
Toward better benchmarking: challenge-based methods assessment in cancer genomics.
- Published in:
- Genome Biology, 2014, v. 15, n. 9, p. 462, doi. 10.1186/s13059-014-0462-7
- By:
- Publication type:
- Article
Report: workshop on mediastinal grey zone lymphoma.
- Published in:
- European Journal of Haematology, 2005, v. 75, p. 45, doi. 10.1111/j.1600-0609.2005.00454.x
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- Publication type:
- Article
Improving Breast Cancer Survival Analysis through Competition-Based Multidimensional Modeling
- Published in:
- PLoS Computational Biology, 2013, v. 9, n. 5, p. 1, doi. 10.1371/journal.pcbi.1003047
- By:
- Publication type:
- Article
SJARACNe: a scalable software tool for gene network reverse engineering from big data.
- Published in:
- Bioinformatics, 2019, v. 35, n. 12, p. 2165, doi. 10.1093/bioinformatics/bty907
- By:
- Publication type:
- Article
ZCCHC17 is a master regulator of synaptic gene expression in Alzheimer's disease.
- Published in:
- Bioinformatics, 2018, v. 34, n. 3, p. 367, doi. 10.1093/bioinformatics/btx608
- By:
- Publication type:
- Article
ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual information.
- Published in:
- Bioinformatics, 2016, v. 32, n. 14, p. 2233, doi. 10.1093/bioinformatics/btw216
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- Publication type:
- Article
Detection and removal of spatial bias in multiwell assays.
- Published in:
- Bioinformatics, 2016, v. 32, n. 13, p. 1959, doi. 10.1093/bioinformatics/btw092
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- Publication type:
- Article
ScreenBEAM: a novel meta-analysis algorithm for functional genomics screens via Bayesian hierarchical modeling.
- Published in:
- Bioinformatics, 2016, v. 32, n. 2, p. 260, doi. 10.1093/bioinformatics/btv556
- By:
- Publication type:
- Article
DIGGIT: a Bioconductor package to infer genetic variants driving cellular phenotypes.
- Published in:
- Bioinformatics, 2015, v. 31, n. 24, p. 4032, doi. 10.1093/bioinformatics/btv499
- By:
- Publication type:
- Article
The Cyni framework for network inference in Cytoscape.
- Published in:
- 2015
- By:
- Publication type:
- Product Review
Hypothalamic proteoglycan syndecan-3 is a novel cocaine addiction resilience factor.
- Published in:
- Nature Communications, 2013, v. 4, n. 6, p. 1955, doi. 10.1038/ncomms2955
- By:
- Publication type:
- Article
HDAC6 activity is a non-oncogene addiction hub for inflammatory breast cancers.
- Published in:
- 2015
- By:
- Publication type:
- journal article
CTD<sup>2</sup> Dashboard: a searchable web interface to connect validated results from the Cancer Target Discovery and Development Network.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax054
- By:
- Publication type:
- Article
A human B-cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers.
- Published in:
- Molecular Systems Biology, 2010, v. 6, n. 1, p. 1, doi. 10.1038/msb.2010.31
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- Publication type:
- Article
A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas.
- Published in:
- Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.2
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- Publication type:
- Article
Lessons from the DREAM2 Challenges.
- Published in:
- Annals of the New York Academy of Sciences, 2009, v. 1158, p. 159, doi. 10.1111/j.1749-6632.2009.04497.x
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- Publication type:
- Article
Preface.
- Published in:
- 2009
- By:
- Publication type:
- Other
Theory and Limitations of Genetic Network Inference from Microarray Data.
- Published in:
- Annals of the New York Academy of Sciences, 2007, v. 1115, p. 51, doi. 10.1196/annals.1407.019
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- Publication type:
- Article
Preface.
- Published in:
- Annals of the New York Academy of Sciences, 2007, v. 1115, p. xi, doi. 10.1196/annals.1407.022
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- Publication type:
- Article
Dialogue on Reverse-Engineering Assessment and Methods.
- Published in:
- Annals of the New York Academy of Sciences, 2007, v. 1115, p. 1, doi. 10.1196/annals.1407.021
- By:
- Publication type:
- Article
Gene Expression Dynamics during Germinal Center Transit in B Cells.
- Published in:
- Annals of the New York Academy of Sciences, 2003, v. 987, n. 1, p. 166, doi. 10.1111/j.1749-6632.2003.tb06045.x
- By:
- Publication type:
- Article
Tracking CD40 Signaling during Normal Germinal Center Development by Gene Expression Profiling.
- Published in:
- Annals of the New York Academy of Sciences, 2003, v. 987, n. 1, p. 288, doi. 10.1111/j.1749-6632.2003.tb06064.x
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- Publication type:
- Article
Corrigendum: Structure-based prediction of protein-protein interactions on a genome-wide scale.
- Published in:
- Nature, 2013, v. 495, n. 7439, p. 127, doi. 10.1038/nature11977
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- Publication type:
- Article
Structure-based prediction of protein-protein interactions on a genome-wide scale.
- Published in:
- Nature, 2012, v. 490, n. 7421, p. 556, doi. 10.1038/nature11503
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- Publication type:
- Article
The transcriptional network for mesenchymal transformation of brain tumours.
- Published in:
- Nature, 2010, v. 463, n. 7279, p. 318, doi. 10.1038/nature08712
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- Publication type:
- Article
geWorkbench: an open source platform for integrative genomics.
- Published in:
- Bioinformatics, 2010, v. 26, n. 14, p. 1779, doi. 10.1093/bioinformatics/btq282
- By:
- Publication type:
- Article
Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks.
- Published in:
- Bioinformatics, 2007, v. 23, n. 13, p. i282, doi. 10.1093/bioinformatics/btm201
- By:
- Publication type:
- Article
A Patient‐to‐Model‐to‐Patient (PMP) Cancer Drug Discovery Protocol for Identifying and Validating Therapeutic Agents Targeting Tumor Regulatory Architecture.
- Published in:
- Current Protocols, 2022, v. 2, n. 9, p. 1, doi. 10.1002/cpz1.544
- By:
- Publication type:
- Article
MEF2B mutations lead to deregulated expression of the oncogene BCL6 in diffuse large B cell lymphoma.
- Published in:
- Nature Immunology, 2013, v. 14, n. 10, p. 1084, doi. 10.1038/ni.2688
- By:
- Publication type:
- Article
Fimepinostat (CUDC‐907) in patients with relapsed/refractory diffuse large B cell and high‐grade B‐cell lymphoma: report of a phase 2 trial and exploratory biomarker analyses.
- Published in:
- British Journal of Haematology, 2021, v. 195, n. 2, p. 201, doi. 10.1111/bjh.17730
- By:
- Publication type:
- Article
Quantitative assessment of protein activity in orphan tissues and single cells using the metaVIPER algorithm.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03843-3
- By:
- Publication type:
- Article
PLATE-Seq for genome-wide regulatory network analysis of high-throughput screens.
- Published in:
- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00136-z
- By:
- Publication type:
- Article
A computational systems approach identifies synergistic specification genes that facilitate lineage conversion to prostate tissue.
- Published in:
- Nature Communications, 2017, v. 8, n. 4, p. 14662, doi. 10.1038/ncomms14662
- By:
- Publication type:
- Article