Works matching IS 1553734X AND DT 2012 AND VI 8 AND IP 11

Results: 50

The PLOS Computational Biology Software Section.

Published in:

2012

By:

Prlić, Andreas;
Lapp, Hilmar

Publication type:

Editorial

Accurate Prediction of the Dynamical Changes within the Second PDZ Domain of PTP1e.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002794

By:

Cilia, Elisa;
Vuister, Geerten W.;
Lenaerts, Tom

Publication type:

Article

Experimental Studies and Dynamics Modeling Analysis of the Swimming and Diving of Whirligig Beetles (Coleoptera: Gyrinidae).

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002792

By:

Zhonghua Xu;
Lenaghan, Scott C.;
Reese, Benjamin E.;
Xinghua Jia;
Mingjun Zhang

Publication type:

Article

Simulations of Long-Term Community Dynamics in Coral Reefs - How Perturbations Shape Trajectories.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002791

By:

Kubicek, Andreas;
Muhando, Christopher;
Reuter, Hauke

Publication type:

Article

Reconstructing Mammalian Sleep Dynamics with Data Assimilation.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002788

By:

Sedigh-Sarvestani, Madineh;
Schiff, Steven J.;
Gluckman, Bruce J.

Publication type:

Article

Weakly Circadian Cells Improve Resynchrony.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002787

By:

Webb, Alexis B.;
Taylor, Stephanie R.;
Thoroughman, Kurt A.;
Doyle, Francis J.;
Herzog, Erik D.

Publication type:

Article

How Random Is Social Behaviour? Disentangling Social Complexity through the Study of a Wild House Mouse Population.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002786

By:

Perony, Nicolas;
Tessone, Claudio J.;
König, Barbara;
Schweitzer, Frank

Publication type:

Article

Universal Pacemaker of Genome Evolution.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002785

By:

Snir, Sagi;
Wolf, Yuri I.;
Koonin, Eugene V.

Publication type:

Article

The Ortholog Conjecture Is Untestable by the Current Gene Ontology but Is Supported by RNA Sequencing Data.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002784

By:

Xiaoshu Chen;
Jianzhi Zhang

Publication type:

Article

The Origin of Minus-end Directionality and Mechanochemistry of Ncd Motors.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002783

By:

Jana, Biman;
Hyeon, Changbong;
Onuchic, Jose' N.

Publication type:

Article

Kinetics of Amyloid Aggregation: A Study of the GNNQQNY Prion Sequence.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002782

By:

Nasica-Labouze, Jessica;
Mousseau, Normand

Publication type:

Article

Temporal Expression-based Analysis of Metabolism.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002781

By:

Collins, Sara B.;
Reznik, Ed;
Segrè, Daniel

Publication type:

Article

Bioinformatics for the Human Microbiome Project.

Published in:

2012

By:

Gevers, Dirk;
Pop, Mihai;
Schloss, Patrick D.;
Huttenhower, Curtis

Publication type:

Opinion

Phase Resetting Reveals Network Dynamics Underlying a Bacterial Cell Cycle.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002778

By:

Yihan Lin;
Ying Li;
Crosson, Sean;
Dinner, Aaron R.;
Scherer, Norbert F.

Publication type:

Article

Molecular Basis of Calcium-Sensitizing and Desensitizing Mutations of the Human Cardiac Troponin C Regulatory Domain: A Multi-Scale Simulation Study.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002777

By:

Kekenes-Husney, Peter Michael;
Lindert, Steffen;
McCammon, James Andrew

Publication type:

Article

The Dominant Folding Route Minimizes Backbone Distortion in SH3.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002776

By:

Lammert, Heiko;
Noel, Jeffrey K.;
Onuchic, José N.

Publication type:

Article

Functional Connectivity and Tuning Curves in Populations of Simultaneously Recorded Neurons.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002775

By:

Stevenson, Ian H.;
London, Brian M.;
Oby, Emily R.;
Sachs, Nicholas A.;
Reimer, Jacob;
Englitz, Bernhard;
David, Stephen V.;
Shamma, Shihab A.;
Blanche, Timothy J.;
Mizuseki, Kenji;
Zandvakili, Amin;
Hatsopoulos, Nicholas G.;
Miller, Lee E.;
Kording, Konrad P.

Publication type:

Article

Sensorimotor Learning Biases Choice Behavior: A Learning Neural Field Model for Decision Making.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002774

By:

Klaes, Christian;
Schneegans, Sebastian;
Schöner, Gregor;
Gail, Alexander

Publication type:

Article

Distinct Neurogenomic States in Basal Ganglia Subregions Relate Differently to Singing Behavior in Songbirds.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002773

By:

Hilliard, Austin T.;
Miller, Julie E.;
Horvath, Steve;
White, Stephanie A.

Publication type:

Article

Stochastic Modeling of Expression Kinetics Identifies Messenger Half-Lives and Reveals Sequential Waves of Co-ordinated Transcription and Decay.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002772

By:

Cacace, Filippo;
Paci, Paola;
Cusimano, Valerio;
Germani, Alfredo;
Farina, Lorenzo

Publication type:

Article

Internal Representations of Temporal Statistics and Feedback Calibrate Motor-Sensory Interval Timing.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002771

By:

Acerbi, Luigi;
Wolpert, Daniel M.;
Sethu, Vijayakumar

Publication type:

Article

Elastic Energy Storage and Radial Forces in the Myofilament Lattice Depend on Sarcomere Length.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002770

By:

Williams, C. David;
Regnier, Michael;
Daniel, Thomas L.

Publication type:

Article

Functional Analysis of Metabolic Channeling and Regulation in Lignin Biosynthesis: A Computational Approach.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002769

By:

Yun Lee;
Escamilla-Treviño, Luis;
Dixon, Richard A.;
Voit, Eberhard O.

Publication type:

Article

A Bayesian Inference Framework to Reconstruct Transmission Trees Using Epidemiological and Genetic Data.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002768

By:

Morelli, Marco J.;
Thébaud, Gaël;
Chadoeuf, Joël;
King, Donald P.;
Haydon, Daniel T.;
Soubeyrand, Samuel

Publication type:

Article

The Role of Exposure History on HIV Acquisition: Insights from Repeated Low-dose Challenge Studies.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002767

By:

Regoes, Roland R.

Publication type:

Article

Ten Simple Rules to Protect Your Intellectual Property.

Published in:

2012

By:

Jolly, Mark;
Fletcher, Anthony C.;
Bourne, Philip E.

Publication type:

Editorial

Structural Insights into the Inhibition of Actin-Capping Protein by Interactions with Phosphatidic Acid and Phosphatidylinositol (4,5)-Bisphosphate.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002765

By:

Pleskot, Roman;
Pejchar, Premysl;
arsky, Viktor Z.;
Staiger, Christopher J.;
Potocky, Martin

Publication type:

Article

Mesoscopic Model of Actin-Based Propulsion.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002764

By:

Jie Zhu;
Mogilner, Alex

Publication type:

Article

Chemotactic Migration of T Cells towards Dendritic Cells Promotes the Detection of Rare Antigens.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002763

By:

Vroomans, Renske M. A.;
Marée, Athanasius F. M.;
de Boer, Rob J.;
Beltman, Joost B.

Publication type:

Article

Phenomenological Model for Predicting the Catabolic Potential of an Arbitrary Nutrient.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002762

By:

Seaver, Samuel M. D.;
Sales-Pardo, Marta;
Guimera`, Roger;
Amaral, Luıs A. Nunes

Publication type:

Article

pH-Dependent Conformational Changes in Proteins and Their Effect on Experimental pK<sub>a</sub>s: The Case of Nitrophorin 4.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002761

By:

Di Russo, Natali V.;
Estrin, Dario A.;
Marti, Marcelo A.;
Roitberg, Adrian E.

Publication type:

Article

Efficient ''Communication through Coherence'' Requires Oscillations Structured to Minimize Interference between Signals.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002760

By:

Akam, Thomas E.;
Kullmann, Dimitri M.

Publication type:

Article

Music in Our Ears: The Biological Bases of Musical Timbre Perception.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002759

By:

Patil, Kailash;
Pressnitzer, Daniel;
Shamma, Shihab;
Elhilali, Mounya

Publication type:

Article

Impact of Stoichiometry Representation on Simulation of Genotype-Phenotype Relationships in Metabolic Networks.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002758

By:

Brochado, Ana Rita;
Andrejev, Sergej;
Maranas, Costas D.;
Patil, Kiran R.

Publication type:

Article

A Mathematical Model of CR3/TLR2 Crosstalk in the Context of Francisella tularensis Infection.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002757

By:

Leander, Rachel;
Dai, Shipan;
Schlesinger, Larry S.;
Friedman, Avner

Publication type:

Article

Coordinated Optimization of Visual Cortical Maps (II) Numerical Studies.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002756

By:

Reichl, Lars;
Heide, Dominik;
Löwel, Siegrid;
Crowley, Justin C.;
Kaschube, Matthias;
Wolf, Fred

Publication type:

Article

Determinants of Translation Elongation Speed and Ribosomal Profiling Biases in Mouse Embryonic Stem Cells.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002755

By:

Dana, Alexandra;
Tuller, Tamir

Publication type:

Article

Dynamic Control of Selectivity in the Ubiquitination Pathway Revealed by an ASP to GLU Substitution in an Intra-Molecular Salt-Bridge Network.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002754

By:

van Wijk, Sjoerd J. L.;
Melquiond, Adrien S. J.;
de Vries, Sjoerd J.;
Timmers, H. Th. Marc;
Bonvin, Alexandre M. J. J.

Publication type:

Article

Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002753

By:

Poon, Art F. Y.;
Swenson, Luke C.;
Bunnik, Evelien M.;
Edo-Matas, Diana;
Schuitemaker, Hanneke;
van't Wout, Angélique B.;
Harrigan, P. Richard

Publication type:

Article

Comparative Analysis of RNA Families Reveals Distinct Repertoires for Each Domain of Life.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002752

By:

Hoeppner, Marc P.;
Gardner, Paul P.;
Poole, Anthony M.

Publication type:

Article

Functional Inference of Complex Anatomical Tendinous Networks at a Macroscopic Scale via Sparse Experimentation.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002751

By:

Saxena, Anupam;
Lipson, Hod;
Valero-Cuevas, Francisco J.

Publication type:

Article

The Role of Flexibility and Conformational Selection in the Binding Promiscuity of PDZ Domains.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002749

By:

Münz, Márton;
Hein, Jotun;
Biggin, Philip C.

Publication type:

Article

A Characterization of Scale Invariant Responses in Enzymatic Networks.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002748

By:

Skataric, Maja;
Sontag, Eduardo D.

Publication type:

Article

Theory on the Coupled Stochastic Dynamics of Transcription and Splice-Site Recognition.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002747

By:

Murugan, Rajamanickam;
Kreiman, Gabriel

Publication type:

Article

Evolution of Associative Learning in Chemical Networks.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002739

By:

McGregor, Simon;
Vasas, Vera;
Husbands, Phil;
Fernando, Chrisantha

Publication type:

Article

A Graphical Modelling Approach to the Dissection of Highly Correlated Transcription Factor Binding Site Profiles.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002725

By:

Stojnic, Robert;
Fu, Audrey Qiuyan;
Adryan, Boris

Publication type:

Article

Disease Prevention versus Data Privacy: Using Landcover Maps to Inform Spatial Epidemic Models.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002723

By:

Tildesley, Michael J.;
Ryan, Sadie J.

Publication type:

Article

This Déjà Vu Feeling--Analysis of Multidomain Protein Evolution in Eukaryotic Genomes.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002701

By:

Zmasek, Christian M.;
Godzik, Adam

Publication type:

Article

Strategy Diversity Stabilizes Mutualism through Investment Cycles, Phase Polymorphism, and Spatial Bubbles.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002660

By:

Boza, Gergely;
Kun, Ádám;
Scheuring, István;
Dieckmann, Ulf

Publication type:

Article

Coordinated Optimization of Visual Cortical Maps (I) Symmetry-based Analysis.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002466

By:

Reichl, Lars;
Heide, Dominik;
Lö wel, Siegrid;
Crowley, Justin C.;
Kaschube, Matthias;
Wolf, Fred

Publication type:

Article