Works matching IS 1553734X AND DT 2012 AND VI 8 AND IP 5

Results: 42

Termination of Ca2+ Release for Clustered IP3R Channels.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002485

By:

Rüdiger, Sten;
Jung, Peter;
Jian-Wei Shuai

Publication type:

Article

Structure and Age Jointly Influence Rates of Protein Evolution.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002542

By:

Toll-Riera, Macarena;
Bostick, David;
Albà, M. Mar;
Plotkin, Joshua B.

Publication type:

Article

The CanOE Strategy: Integrating Genomic and Metabolic Contexts across Multiple Prokaryote Genomes to Find Candidate Genes for Orphan Enzymes.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002540

By:

Thil Smith, Adam Alexander;
Belda, Eugeni;
Viari, Alain;
Medigue, Claudine;
Vallenet, David

Publication type:

Article

International Society for Computational Biology Honours Gunnar von Heijne and Ziv Bar-Joseph with Top Bioinformatics/Computational Biology Awards for 2012.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002535

By:

Mullins, Justin;
McKay, B. J. Morrison

Publication type:

Article

Thermodynamic Basis for the Emergence of Genomes during Prebiotic Evolution.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002534

By:

Hyung-June Woo;
Satya, Ravi Vijaya;
Reifman, Jaques

Publication type:

Article

Quality of Computationally Inferred Gene Ontology Annotations.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002533

By:

Škunca, Nives;
Altenhoff, Adrian;
Dessimoz, Christophe

Publication type:

Article

General Anesthetics Predicted to Block the GLIC Pore with Micromolar Affinity.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002532

By:

LeBard, David N.;
Hénin, Jérôme;
Eckenhoff, Roderic G.;
Klein, Michael L.;
Brannigan, Grace

Publication type:

Article

A Computational Investigation on the Connection between Dynamics Properties of Ribosomal Proteins and Ribosome Assembly.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002530

By:

Burton, Brittany;
Zimmermann, Michael T.;
Jernigan, Robert L.;
Yongmei Wang

Publication type:

Article

Exploring Massive, Genome Scale Datasets with the GenometriCorr Package.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002529

By:

Favorov, Alexander;
Mularoni, Loris;
Cope, Leslie M.;
Medvedeva, Yulia;
Mironov, Andrey A.;
Makeev, Vsevolod J.;
Wheelan, Sarah J.

Publication type:

Article

Network Topologies and Dynamics Leading to Endotoxin Tolerance and Priming in Innate Immune Cells.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002526

By:

Yan Fu;
Glaros, Trevor;
Meng Zhu;
Ping Wang;
Zhanghan Wu;
Tyson, John J.;
Liwu Li;
Jianhua Xing

Publication type:

Article

Estimating the Fitness Cost of Escape from HLA Presentation in HIV-1 Protease and Reverse Transcriptase.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002525

By:

Mostowy, Rafal;
Kouyos, Roger D.;
Hoof, Ilka;
Hinkley, Trevor;
Haddad, Mojgan;
Whitcomb, Jeannette M.;
Petropoulos, Christos J.;
Keşmir, Can;
Bonhoeffer, Sebastian

Publication type:

Article

Identification of Molecular Pathologies Sufficient to Cause Neuropathic Excitability in Primary Somatosensory Afferents Using Dynamical Systems Theory.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002524

By:

Young-Ah Rho;
Prescott, Steven A.

Publication type:

Article

Conformational Spread in the Flagellar Motor Switch: A Model Study.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002523

By:

Qi Ma;
Nicolau Jr., Dan V.;
Maini, Philip K.;
Berry, Richard M.;
Fan Bai, `

Publication type:

Article

Emergence of a Small-World Functional Network in Cultured Neurons.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002522

By:

Downes, Julia H.;
Hammond, Mark W.;
Xydas, Dimitris;
Spencer, Matthew C.;
Becerra, Victor M.;
Warwick, Kevin;
Whalley, Ben J.;
Nasuto, Slawomir J.

Publication type:

Article

The Layer-Oriented Approach to Declarative Languages for Biological Modeling.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002521

By:

Raikov, Ivan;
De Schutter, Erik

Publication type:

Article

Optimality of Human Contour Integration.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002520

By:

Ernst, Udo A.;
Mandon, Sunita;
Schinkel-Bielefeld, Nadja;
Neitzel, Simon D.;
Kreiter, Andreas K.;
Pawelzik, Klaus R.

Publication type:

Article

Reconstruction of Genome-Scale Active Metabolic Networks for 69 Human Cell Types and 16 Cancer Types Using INIT.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002518

By:

Agren, Rasmus;
Bordel, Sergio;
Mardinoglu, Adil;
Pornputtapong, Natapol;
Nookaew, Intawat;
Nielsen, Jens

Publication type:

Article

Proteome Sampling by the HLA Class I Antigen Processing Pathway.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002517

By:

Hoof, Ilka;
van Baarle, Debbie;
Hildebrand, William H.;
Keşmir, Can

Publication type:

Article

Entrainment of the Mammalian Cell Cycle by the Circadian Clock: Modeling Two Coupled Cellular Rhythms.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002516

By:

Gérard, Claude;
Goldbeter, Albert

Publication type:

Article

A Two-Dimensional Model of the Colonic Crypt Accounting for the Role of the Basement Membrane and Pericryptal Fibroblast Sheath.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002515

By:

Dunn, Sara-Jane;
Appleton, Paul L.;
Nelson, Scott A.;
Näthke, Inke S.;
Gavaghan, David J.;
Osborne, James M.

Publication type:

Article

Resolving the Ortholog Conjecture: Orthologs Tend to Be Weakly, but Significantly, More Similar in Function than Paralogs.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002514

By:

Altenhoff, Adrian M.;
Studer, Romain A.;
Robinson-Rechavi, Marc;
Dessimoz, Christophe

Publication type:

Article

Measuring Granger Causality between Cortical Regions from Voxelwise fMRI BOLD Signals with LASSO.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002513

By:

Wei Tang;
Bressler, Steven L.;
Sylvester, Chad M.;
Shulman, Gordon L.;
Corbetta, Maurizio

Publication type:

Article

Mechanical Stress Inference for Two Dimensional Cell Arrays.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002512

By:

Chiou, Kevin K.;
Hufnagel, Lars;
Shraiman, Boris I.

Publication type:

Article

Insights into the Fold Organization of TIM Barrel from Interaction Energy Based Structure Networks.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002505

By:

Vijayabaskar, M. S.;
Vishveshwara, Saraswathi

Publication type:

Article

Dynamic Prestress in a Globular Protein.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002509

By:

Edwards, Scott A.;
Wagner, Johannes;
Gr&aauml;ter, Frauke

Publication type:

Article

Optimal Control of Saccades by Spatial-Temporal Activity Patterns in the Monkey Superior Colliculus.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002508

By:

Goossens, H. H. L. M.;
van Opstal, A. J.

Publication type:

Article

Modeling HIV-1 Drug Resistance as Episodic Directional Selection.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1

By:

Murrell, Ben;
de Oliveira, Tulio;
Seebregts, Chris;
Pond, Sergei L. Kosakovsky;
Scheffler, Konrad

Publication type:

Article

Filament Compliance Influences Cooperative Activation of Thin Filaments and the Dynamics of Force Production in Skeletal Muscle.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002506

By:

Tanner, Bertrand C. W.;
Daniel, Thomas L.;
Regnier, Michael

Publication type:

Article

Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002511

By:

Winter, Christof;
Kristiansen, Glen;
Kersting, Stephan;
Roy, Janine;
Aust, Daniela;
Knösel, Thomas;
Rümmele, Petra;
Jahnke, Beatrix;
Hentrich, Vera;
Rückert, Felix;
Niedergethmann, Marco;
Weichert, Wilko;
Bahra, Marcus;
Schlitt, Hans J.;
Settmacher, Utz;
Friess, Helmut;
Büchler, Markus;
Saeger, Hans-Detlev;
Schroeder, Michael;
Pilarsky, Christian

Publication type:

Article

Prediction of Drug-Target Interactions and Drug Repositioning via Network-Based Inference.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002503

By:

Cheng, Feixiong;
Liu, Chuang;
Jiang, Jing;
Lu, Weiqiang;
Li, Weihua;
Liu, Guixia;
Zhou, Weixing;
Huang, Jin;
Tang, Yun

Publication type:

Article

Virus Capsid Dissolution Studied by Microsecond Molecular Dynamics Simulations.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002502

By:

Larsson, Daniel S. D.;
Liljas, Lars;
van der Spoel, David

Publication type:

Article

A Spatial Model of Mosquito Host-Seeking Behavior.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002500

By:

Cummins, Bree;
Cortez, Ricardo;
Foppa, Ivo M.;
Walbeck, Justin;
Hyman, James M.

Publication type:

Article

Accessible High-Throughput Virtual Screening Molecular Docking Software for Students and Educators.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002499

By:

Jacob, Reed B.;
Andersen, Tim;
McDougal, Owen M.

Publication type:

Article

Intermittent Motion in Desert Locusts: Behavioural Complexity in Simple Environments.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002498

By:

Bazazi, Sepideh;
Bartumeus, Frederic;
Hale, Joseph J.;
Couzin, Iain D.

Publication type:

Article

Modeling Meiotic Chromosomes Indicates a Size Dependent Contribution of Telomere Clustering and Chromosome Rigidity to Homologue Juxtaposition.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002496

By:

Penfold, Christopher A.;
Brown, Paul E.;
Lawrence, Neil D.;
Goldman, Alastair S. H.

Publication type:

Article

Simulation of Molecular Data under Diverse Evolutionary Scenarios.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002495

By:

Arenas, Miguel

Publication type:

Article

Homeostatic Scaling of Excitability in Recurrent Neural Networks.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002494

By:

Remme, Michiel W. H.;
Wadman, Wytse J.

Publication type:

Article

NIBBS-Search for Fast and Accurate Prediction of Phenotype-Biased Metabolic Systems.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002490

By:

Schmidt, Matthew C.;
Rocha, Andrea M.;
Padmanabhan, Kanchana;
Shpanskaya, Yekaterina;
Banfield, Jill;
Scott, Kathleen;
Mihelcic, James R.;
Samatova1, Nagiza F.

Publication type:

Article

Termination of Ca2+ Release for Clustered IP3R Channels.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1

By:

R&uauml;diger, Sten;
Jung, Peter;
Shuai, Jian-Wei

Publication type:

Article

Education: Crossing Over…Markov Meets Mendel.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002462

By:

Mneimneh, Saad

Publication type:

Article

Adhesion Failures Determine the Pattern of Choroidal Neovascularization in the Eye: A Computer Simulation Study.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002440

By:

Shirinifard, Abbas;
Glazier, James Alexander;
Swat, Maciej;
Gens, J. Scott;
Family, Fereydoon;
Jiang, Yi;
Grossniklaus, Hans E.

Publication type:

Article

Challenges and New Approaches to Proving the Existence of Muscle Synergies of Neural Origin.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002434

By:

Kutch, Jason J.;
Valero-Cuevas, Francisco J.

Publication type:

Article